View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0028b20 (Length: 737)
Name: NF0028b20
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028b20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 10 - 698
Target Start/End: Complemental strand, 27203907 - 27203215
Alignment:
| Q |
10 |
gatcactggccatttgatcaatgccatcactctttattgaaaacaataaggtataaaacatgcatgagcatagaatcaccattaaaacaataccatcact |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27203907 |
gatcactggccatttgatcaatgccatcactctttattgaaaacaataaggtataaaacatgcatgagcatagaatcaccattaaaacaataccatcact |
27203808 |
T |
|
| Q |
110 |
tttttaatcatccatttgataaatttattgagaacaagtacaacatctgactcaacaccacac-ttgtaatttagattctgaaataattaaactagacag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27203807 |
tttttaatcatccatttgataaatttattgagaacaagtacaacatctgactcaacaccacaccttgcaatttagattctgaaataattaaactagacag |
27203708 |
T |
|
| Q |
209 |
atactaggaaacaccatattacattaaagactcaaactaaacaagcatgttttgctcatcatattttctatggtaatgtaaaatttaatattacatgaaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27203707 |
atactaggaaacaccatattacattaaagactcaaactaaacaagcatgttttgctcatcacattttctatgataatgtaaaatttaatattacatgaaa |
27203608 |
T |
|
| Q |
309 |
gtttgtgaccagacaagcattatttgttcgtcatagttttgacgatttagttaactttgcggcaattagtacgaatctggccgttattcccagttaaagg |
408 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27203607 |
gtttgtgactagacaagcattatttgttcatcatagtttcaacgatttagttaactttgcggcaattagtacgaatctggccgttattcccggttaaagg |
27203508 |
T |
|
| Q |
409 |
gctgagatttcccattttcaccatagcactagcaaaatctgtatagaaagttgaaggacttgtgctataggtagtgacttgagaatcagtagaaccacca |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
27203507 |
actgagatttcccattttcaccatagcactagcaaaatctgtatagaaagttgaaggacttgtgctatatgcagtgacttgagagtcagtagaaccacca |
27203408 |
T |
|
| Q |
509 |
ctgaagagttgttgatcagaatgtaaaagtccttttttgtttactagattcttgaaataagcattgtcnaataatacattggttgtgacatcaagtgagg |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27203407 |
ctgaagagttgttgatcagaatgtaaaagtccttttttgttaacaagattcttgaaataagcattgtcaaataatacattggttgtgacatcaagtgagg |
27203308 |
T |
|
| Q |
609 |
taaggttgctatcaccacctgtacttggacagtttga-ttcactgaggntgcgaaattng-anccatgattgnctcgttat-aatccggcctc |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | | | ||||||| |||||||| ||||||||||| |
|
|
| T |
27203307 |
taaggttgctatcaccacctgtacttggacagtttgatttcactgaggttgcgaaatttgaatcaatgattgtctcgttataaatccggcctc |
27203215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 549
Target Start/End: Original strand, 10074513 - 10074570
Alignment:
| Q |
492 |
aatcagtagaaccaccactgaagagttgttgatcagaatgtaaaagtccttttttgtt |
549 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
10074513 |
aatcagtggaaccaccattatagagttgttgatcagaatgcaaaagacctttcttgtt |
10074570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 611 times since January 2019
Visitors: 1099