View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0028b3 (Length: 740)

Name: NF0028b3
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0028b3
NF0028b3
[»] chr4 (16 HSPs)
chr4 (153-695)||(18410534-18411082)
chr4 (8-156)||(20208455-20208603)
chr4 (8-156)||(52469023-52469171)
chr4 (8-148)||(18884492-18884632)
chr4 (12-156)||(48806434-48806578)
chr4 (63-156)||(20209307-20209400)
chr4 (32-140)||(36480536-36480641)
chr4 (41-117)||(32365960-32366036)
chr4 (18-86)||(18411199-18411267)
chr4 (8-55)||(18411143-18411190)
chr4 (94-144)||(41795348-41795398)
chr4 (14-148)||(48807374-48807508)
chr4 (36-82)||(50446981-50447027)
chr4 (94-144)||(56138283-56138333)
chr4 (8-113)||(8111438-8111543)
chr4 (9-54)||(28084070-28084115)
[»] chr8 (19 HSPs)
chr8 (8-140)||(39277457-39277589)
chr8 (8-120)||(28694023-28694135)
chr8 (12-156)||(43520756-43520900)
chr8 (8-83)||(12207258-12207333)
chr8 (8-83)||(12451686-12451761)
chr8 (32-153)||(7121769-7121890)
chr8 (8-156)||(13782180-13782328)
chr8 (12-75)||(38134173-38134236)
chr8 (8-78)||(39513245-39513315)
chr8 (87-156)||(34892789-34892858)
chr8 (94-146)||(32383195-32383247)
chr8 (94-146)||(32437150-32437202)
chr8 (8-72)||(34891955-34892019)
chr8 (63-139)||(483815-483892)
chr8 (29-117)||(3695336-3695421)
chr8 (88-148)||(21406292-21406353)
chr8 (88-148)||(21800784-21800845)
chr8 (87-156)||(36595926-36595995)
chr8 (91-136)||(40039684-40039729)
[»] chr5 (13 HSPs)
chr5 (9-103)||(18512177-18512271)
chr5 (8-156)||(30192437-30192585)
chr5 (8-136)||(18512652-18512779)
chr5 (8-82)||(8539570-8539644)
chr5 (8-82)||(11348529-11348603)
chr5 (8-78)||(41622118-41622188)
chr5 (8-153)||(35671027-35671172)
chr5 (63-134)||(35926362-35926433)
chr5 (8-57)||(35651360-35651409)
chr5 (8-136)||(13838424-13838552)
chr5 (92-140)||(27532613-27532661)
chr5 (90-140)||(25890021-25890071)
chr5 (95-140)||(7762240-7762285)
[»] chr2 (13 HSPs)
chr2 (9-156)||(33222562-33222709)
chr2 (39-156)||(29407867-29407984)
chr2 (63-139)||(17426362-17426439)
chr2 (29-140)||(2983365-2983477)
chr2 (8-136)||(26543989-26544117)
chr2 (88-140)||(41183220-41183272)
chr2 (65-120)||(41566181-41566236)
chr2 (94-156)||(2271717-2271779)
chr2 (8-78)||(4286039-4286109)
chr2 (94-144)||(43982230-43982280)
chr2 (8-73)||(14002464-14002529)
chr2 (9-82)||(36652852-36652925)
chr2 (63-139)||(42499785-42499862)
[»] chr3 (22 HSPs)
chr3 (12-156)||(19842453-19842596)
chr3 (8-156)||(32592162-32592310)
chr3 (63-156)||(32593092-32593185)
chr3 (29-77)||(24700687-24700735)
chr3 (94-140)||(9429845-9429891)
chr3 (94-144)||(49140839-49140889)
chr3 (8-136)||(1294077-1294205)
chr3 (12-156)||(14043878-14044022)
chr3 (29-140)||(31977625-31977733)
chr3 (30-117)||(40798220-40798304)
chr3 (88-144)||(52570558-52570614)
chr3 (39-78)||(11248533-11248572)
chr3 (94-144)||(34049111-34049161)
chr3 (94-140)||(34691656-34691702)
chr3 (94-140)||(36817517-36817563)
chr3 (94-140)||(48246443-48246489)
chr3 (94-144)||(54389826-54389876)
chr3 (29-78)||(4274052-4274101)
chr3 (88-137)||(29918340-29918389)
chr3 (88-137)||(29967493-29967542)
chr3 (63-139)||(49138613-49138690)
chr3 (64-140)||(55176344-55176417)
[»] chr7 (15 HSPs)
chr7 (34-140)||(17840886-17840992)
chr7 (8-156)||(14102328-14102476)
chr7 (93-140)||(20353926-20353973)
chr7 (29-117)||(25195240-25195325)
chr7 (32-148)||(38265417-38265530)
chr7 (90-139)||(40587688-40587737)
chr7 (8-156)||(11885904-11886051)
chr7 (8-156)||(14412345-14412493)
chr7 (8-73)||(34139732-34139797)
chr7 (94-144)||(9367716-9367766)
chr7 (63-139)||(9365678-9365755)
chr7 (63-139)||(10098365-10098442)
chr7 (90-139)||(42499436-42499485)
chr7 (29-78)||(46332055-46332104)
chr7 (29-113)||(48000187-48000268)
[»] scaffold0092 (1 HSPs)
scaffold0092 (8-156)||(54510-54658)
[»] chr1 (7 HSPs)
chr1 (8-116)||(50036792-50036901)
chr1 (32-147)||(41909694-41909809)
chr1 (9-82)||(49429189-49429262)
chr1 (8-148)||(13761032-13761172)
chr1 (94-148)||(46216429-46216484)
chr1 (63-156)||(18609875-18609968)
chr1 (63-140)||(29424380-29424457)
[»] chr6 (9 HSPs)
chr6 (88-148)||(9049072-9049132)
chr6 (8-103)||(14124751-14124846)
chr6 (88-144)||(12783949-12784005)
chr6 (34-140)||(28249855-28249962)
chr6 (63-148)||(9048075-9048161)
chr6 (98-156)||(11157771-11157829)
chr6 (94-140)||(11840246-11840292)
chr6 (94-140)||(13388704-13388750)
chr6 (63-139)||(6207057-6207134)
[»] scaffold0176 (1 HSPs)
scaffold0176 (8-73)||(657-722)
[»] scaffold0065 (1 HSPs)
scaffold0065 (12-148)||(65266-65403)
[»] scaffold0794 (1 HSPs)
scaffold0794 (88-140)||(5296-5348)
[»] scaffold0038 (1 HSPs)
scaffold0038 (34-140)||(50017-50124)
[»] scaffold1379 (1 HSPs)
scaffold1379 (94-156)||(414-476)
[»] scaffold0014 (1 HSPs)
scaffold0014 (63-139)||(84579-84656)


Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 153 - 695
Target Start/End: Complemental strand, 18411082 - 18410534
Alignment:
Q  153 aatttgtatatatgttgagtgctctattagatagtgactgatcacacttacgtccggcaatttttgcatttcccaatctttatccaaaaaggaggtcgac 252  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18411082 aatttgtatatatgttgagtgctctattagatagtgactaatcacacttacgtacggcaatttttgcatttcccaatctttatccaaaaaggaggtcgac 18410983  T
Q  253 attaggaatgaatactctcacaaacctttttattaatgtcttttcttattggggtaaaaaacatatgcttcagaaccttgtaattgaattaaaaagaaca 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18410982 attaggaatgaatactctcacaaacctttttattaatgtcttttcttattggggtaaaaaacatatgcttcagaaccttgtaattgaattaaaaagaaca 18410883  T
Q  353 aaattagtggctatagcaaaatgttatccatatgtgctgcgtgtattatccatcgaataaggtacgaaaattcttatagttatatggtacgtacatttct 452  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18410882 aaattagtggctatagcaaaatgttatccatatgggctgcgtgtattatccatcgaataaggtacgaaaattcttatagttatatggtacgtacatttct 18410783  T
Q  453 aacgataaggattgaaccaaagtgtagctctattggttgaaccaagaatcagaagagctgggagttaggtaacttaactgagctaaaaattatagaggtt 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  18410782 aacgataaggattgaaccaaagtgtagctctattggttgaaccaagaatcaaaagagctgggagttaggtaacttaactgagctaaaaattatagaagtt 18410683  T
Q  553 gaaggaccaaggtttgtaaagaagaaaaatttaacatagataatgtagtaacatttgtctattcgaaaagaaaaagaa--aattaaggagat-aaggtta 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||    
T  18410682 gaaggaccaaggtttgtaaagaagaaaaatttaacatagataatgtagtaacatttgtctattcgaaaagaaaaaaaaataattaaggagataaaggtta 18410583  T
Q  650 atc-aagagag-aatactagcatgtagc-acataactggccntgggcta 695  Q
    ||| ||||||| |||||||||||||||| |||||||||||| |||||||    
T  18410582 atcaaagagagaaatactagcatgtagcaacataactggccttgggcta 18410534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 20208455 - 20208603
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||| ||||| | ||||||||| ||||||||| |||||||  | || ||||||||||| ||||||||||| |||||| |||||||||| |      
T  20208455 gttgacacatttggtttggctgagaaacacgagtaaattactcaaatgtccctcggcagttaactgccgaagtttactagaaccggctgcagttaactgc 20208554  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||||||  ||||||||||| || |||||||||||||||||||    
T  20208555 cgaggaaaacctcggtagttaactgcagatgaacttcaaacatgaaatt 20208603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 52469171 - 52469023
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    ||||||| ||||  |||| | ||||||||| ||||||||| |||||||| | ||  ||||||||| |||||||||||| |||||| |||||||||| | |    
T  52469171 gttgacatatttgatttggctgagaaacacgagtaaattactcaaatgcccctcaacagttaactatcgaagtttactcgaaccggctgcagttaactgt 52469072  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||| ||||||||| | |||| ||||||| |||||||||||||||||||    
T  52469071 cgagaaaaacctcagtcgttagctgccgaagaacttcaaacatgaaatt 52469023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 18884632 - 18884492
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||| ||||| | ||||||||| ||||||||| |||||||| | || ||||||||||| |||| |||     ||||| |||||||||| |      
T  18884632 gttgacacatttggtttggctgagaaacacgagtaaattactcaaatgcccctcggcagttaactgccgaaattttgaaaaaccggctgcagttaactgc 18884533  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaac 148  Q
    |||| ||||| ||   ||||||||||||||||| |||||||    
T  18884532 cgagaaaaacttcggcagttaactgccgaggaatttcaaac 18884492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 48806434 - 48806578
Alignment:
Q  12 acacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgag 111  Q
    |||||||| ||||| | ||||||||| ||||| |||| ||||| |   || |||||||||||||||| |||    |||||| |||||||||| |  ||||    
T  48806434 acacatttggtttggctgagaaacacgagtaatttatccaaatacctttcggcagttaactgtcgaaattttaaagaaccggctgcagttaactgccgag 48806533  T
Q  112 gaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||  |||  ||||||||||||||||| ||||||| |||||||    
T  48806534 gaaaatttcagcagttaactgccgaggaatttcaaacctgaaatt 48806578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 20209400 - 20209307
Alignment:
Q  63 gcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    ||||||||||| || |||||| |||||| | |||||||||| |   ||| ||||| ||  ||||||||||||||| ||||||||||||||||||    
T  20209400 gcagttaactgccggagtttattggaactggctgcagttaactgctgagtaaaacttcggtagttaactgccgagaaacttcaaacatgaaatt 20209307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 36480641 - 36480536
Alignment:
Q  32 aaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaact 131  Q
    |||||||||||| |||| |||||| || || ||||||||||| ||||  ||| |||||||| |||||||||| || |||||||||| ||  |||||||||    
T  36480641 aaacacaagtaatttatccaaatgttcctcggcagttaactgccgaa--tta-tggaaccggctgcagttaactaccgaggaaaacttcggtagttaact 36480545  T
Q  132 gccgaggaa 140  Q
     ||||||||    
T  36480544 accgaggaa 36480536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 32366036 - 32365960
Alignment:
Q  41 taaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaac 117  Q
    |||||||||||||||  | || |||| ||||||||||| |||| |||||| |||||||||||| || ||||||||||    
T  32366036 taaattattcaaatgtccctcggcagctaactgtcgaattttattggaactgactgcagttaactaccgaggaaaac 32365960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 18411267 - 18411199
Alignment:
Q  18 ttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactg 86  Q
    |||||||| | ||||||||| ||||||||| | |||||| | ||  |||||||||||||||||||||||    
T  18411267 ttagtttgactgagaaacacgagtaaattacttaaatgcccctcgacagttaactgtcgaagtttactg 18411199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 18411143 - 18411190
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatg 55  Q
    |||||||||||| ||||| | ||||||||| |||||||||||||||||    
T  18411143 gttgacacatttggtttggctgagaaacacgagtaaattattcaaatg 18411190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 41795398 - 41795348
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttc 144  Q
    |||||||||| |  ||||||||||||| |||||||||||||||||| ||||    
T  41795398 ctgcagttaactgccgaggaaaacctcgttagttaactgccgaggatcttc 41795348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 48807508 - 48807374
Alignment:
Q  14 acatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgagga 113  Q
    |||||| ||||| | ||||||||| ||||||||| |||||||  | || |||||||||||||||| |||    |||||| |||||||||| |   |||||    
T  48807508 acatttggtttggctgagaaacacgagtaaattactcaaatgtccctcggcagttaactgtcgaaattttaaagaaccggctgcagttaactgctgagga 48807409  T
Q  114 aaacctcattagttaactgccgaggaacttcaaac 148  Q
    |||| ||   |||||||||| || ||| |||||||    
T  48807408 aaacttcggcagttaactgctgatgaatttcaaac 48807374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 50446981 - 50447027
Alignment:
Q  36 acaagtaaattattcaaatgctcatctgcagttaactgtcgaagttt 82  Q
    |||||||||||| |||||||||| || ||||||||||| ||||||||    
T  50446981 acaagtaaattactcaaatgctcttcggcagttaactgccgaagttt 50447027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 56138283 - 56138333
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttc 144  Q
    |||||||||| |  |||||||||||||| ||||||||||||||||| ||||    
T  56138283 ctgcagttaactgccgaggaaaacctcagtagttaactgccgaggatcttc 56138333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 8111543 - 8111438
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||| ||||| | |||| |||| ||||| ||||  |||||  |||| |||||||| |||||||||||   | ||||| |||||||||| ||     
T  8111543 gttgacacatttggtttggctgagatacacgagtaatttatctaaatgtccatcggcagttaattgtcgaagtttgtggaaaccggctgcagttaactac 8111444  T
Q  108 cgagga 113  Q
    ||||||    
T  8111443 cgagga 8111438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 28084115 - 28084070
Alignment:
Q  9 ttgacacatttagtttgccagagaaacacaagtaaattattcaaat 54  Q
    |||||||||| |||||| | ||||||||||||||||||| ||||||    
T  28084115 ttgacacattgagtttggctgagaaacacaagtaaattactcaaat 28084070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 39277589 - 39277457
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||| ||||| | ||||||||| |||||||||||||||||| | || ||||||||||| ||||||||| | ||| || |||||||||| ||     
T  39277589 gttgacacatttggtttggctgagaaacacgagtaaattattcaaatgcccctcggcagttaactgccgaagtttagtagaatcggctgcagttaattac 39277490  T
Q  108 cgaggaaaacctcattagttaactgccgaggaa 140  Q
    ||||||||||||||  |||||||||||||||||    
T  39277489 cgaggaaaacctcagcagttaactgccgaggaa 39277457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 28694023 - 28694135
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    ||||||||||||||||||   ||||||||| ||||||||| |||||||  | || ||||||||||| ||||||||| |  ||||| |||||||||| |      
T  28694023 gttgacacatttagtttggttgagaaacacgagtaaattactcaaatgtccctcggcagttaactgccgaagtttagtaaaaccggctgcagttaactgc 28694122  T
Q  108 cgaggaaaacctc 120  Q
    |||||||||||||    
T  28694123 cgaggaaaacctc 28694135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 43520900 - 43520756
Alignment:
Q  12 acacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgag 111  Q
    |||||||| |||||   ||||||||| ||||||||||||||||| ||||| ||||||||||| |||| |||    ||| || |||||||||| |   |||    
T  43520900 acacatttggtttgagtgagaaacacgagtaaattattcaaatgttcatcggcagttaactgccgaaattttaaagaatcggctgcagttaactgctgag 43520801  T
Q  112 gaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||| ||   |||||||| |||||||| |||||||||||||||    
T  43520800 gaaaacttcggcagttaactaccgaggaatttcaaacatgaaatt 43520756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 12207333 - 12207258
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagttta 83  Q
    ||||||||||||| |||| | ||||||||| | ||||||| |||||||| |||| ||||||||||| |||||||||    
T  12207333 gttgacacatttaatttggctgagaaacacgaataaattactcaaatgcccatcggcagttaactgccgaagttta 12207258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 12451761 - 12451686
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagttta 83  Q
    ||||||||||||| |||| | ||||||||| | ||||||| |||||||| |||| ||||||||||| |||||||||    
T  12451761 gttgacacatttaatttggctgagaaacacgaataaattactcaaatgcccatcggcagttaactgccgaagttta 12451686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 7121890 - 7121769
Alignment:
Q  32 aaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaact 131  Q
    |||||||||||||||| ||||||||   || |||||||||||||||| |||    |||||| |||||||||| |   ||||||||| ||   ||||||||    
T  7121890 aaacacaagtaaattactcaaatgcctctcggcagttaactgtcgaaattttaaagaaccggctgcagttaactgctgaggaaaacttcggcagttaact 7121791  T
Q  132 gccgaggaacttcaaacatgaa 153  Q
    ||||||||| ||||||| ||||    
T  7121790 gccgaggaatttcaaacctgaa 7121769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 13782180 - 13782328
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    ||||||||||||  |||| | ||||||||| ||||||||| | |||||  | || ||||||||||| | || |||    |||||||||||| |||| |      
T  13782180 gttgacacatttgatttggctgagaaacacgagtaaattacttaaatgtccctcggcagttaactgccaaaattttaaagaaccgactgcaattaactgc 13782279  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||| ||   ||||||||||||||||| ||||||| |||||||    
T  13782280 cgaggaaaacttcggcagttaactgccgaggaatttcaaacctgaaatt 13782328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 38134236 - 38134173
Alignment:
Q  12 acacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtc 75  Q
    |||||||| ||||| | |||| |||||||||||||| |||||||| |||| |||||||||||||    
T  38134236 acacatttggtttggctgagagacacaagtaaattactcaaatgcccatcggcagttaactgtc 38134173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 39513315 - 39513245
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaa 78  Q
    |||||||||||| ||||| | ||||||||| ||||||||| |||||||| | || |||||||||| |||||    
T  39513315 gttgacacatttggtttgactgagaaacacgagtaaattactcaaatgcccctcggcagttaactatcgaa 39513245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 34892858 - 34892789
Alignment:
Q  87 gaaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    ||||||||||||||||| |  |||||||||| ||   ||||||||||||||||| ||||||| |||||||    
T  34892858 gaaccgactgcagttaactgccgaggaaaacttcggcagttaactgccgaggaatttcaaacctgaaatt 34892789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 32383247 - 32383195
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaa 146  Q
    |||||||||| || |||||||||||||  |||||||||||||| |||||||||    
T  32383247 ctgcagttaactaccgaggaaaacctcggtagttaactgccgaagaacttcaa 32383195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 32437202 - 32437150
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaa 146  Q
    |||||||||| || |||||||||||||  |||||||||||||| |||||||||    
T  32437202 ctgcagttaactaccgaggaaaacctcggtagttaactgccgaagaacttcaa 32437150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 34891955 - 34892019
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaact 72  Q
    |||||||||||| ||||  | ||||||||| | |||||||||||||||||| || ||||||||||    
T  34891955 gttgacacatttggtttagctgagaaacacgaataaattattcaaatgctcctcggcagttaact 34892019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 483815 - 483892
Alignment:
Q  63 gcagttaactgtcgaagtttactgga-accgactgcagttaagtatcgaggaaaacctcattagttaactgccgagga 139  Q
    ||||||||||| ||||||||   ||| |||| | ||||||||||  |||||||||||||  |||||||||||||||||    
T  483815 gcagttaactgccgaagtttttaggacaccggcggcagttaagtgccgaggaaaacctcggtagttaactgccgagga 483892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 3695336 - 3695421
Alignment:
Q  29 gagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaac 117  Q
    ||||||||| ||||| |||| ||||||| | || ||||||||||| ||||  ||| |||||||| |||||||||| || ||||||||||    
T  3695336 gagaaacacgagtaatttatccaaatgcccctcggcagttaactgccgaa--tta-tggaaccggctgcagttaactaccgaggaaaac 3695421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 21406292 - 21406353
Alignment:
Q  88 aaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgagg-aacttcaaac 148  Q
    ||||| |||||||||| || |||||||||| ||  |||||||||||||||| ||||||||||    
T  21406292 aaccggctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaac 21406353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 21800784 - 21800845
Alignment:
Q  88 aaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgagg-aacttcaaac 148  Q
    ||||| |||||||||| || |||||||||| ||  |||||||||||||||| ||||||||||    
T  21800784 aaccggctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaac 21800845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 36595995 - 36595926
Alignment:
Q  87 gaaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||| |||||||||| |  |||||||||| | |  ||||||||||||||||| ||||||| |||||||    
T  36595995 gaaccggctgcagttaactgccgaggaaaacttaagcagttaactgccgaggaatttcaaacctgaaatt 36595926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 40039729 - 40039684
Alignment:
Q  91 cgactgcagttaagtatcgaggaaaacctcattagttaactgccga 136  Q
    ||||||||||||| || |||||||||||||  ||||||||||||||    
T  40039729 cgactgcagttaactaccgaggaaaacctcgatagttaactgccga 40039684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 18512177 - 18512271
Alignment:
Q  9 ttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaa 103  Q
    ||||||||||||||||| |  |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |  ||||| ||||||||||    
T  18512177 ttgacacatttagtttggcttagaaacacgagtaaattattcaaatgctcatcggcagttaactgccgaagtttagtaaaaccggctgcagttaa 18512271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 30192437 - 30192585
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    ||||||||||||  |||| | ||||||||| ||||||||| |||||||| | || ||||||||||| |||| |||    |||||| |||||||||| | |    
T  30192437 gttgacacatttgatttgactgagaaacacgagtaaattactcaaatgcccttcggcagttaactgccgaaattttaaagaaccggctgcagttaactgt 30192536  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||| ||   ||||||||||||||||| ||||||| |||||||    
T  30192537 cgaggaaaacttcggcagttaactgccgaggaatttcaaacctgaaatt 30192585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 18512779 - 18512652
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||||||||| | ||||||||| ||||||||| | |||||||| || ||||||||||| ||||||||| |  ||||| |||||||||| |      
T  18512779 gttgacacatttagtttggctgagaaacacgagtaaattact-aaatgctcttcggcagttaactgccgaagtttagtaaaaccggctgcagttaactgc 18512681  T
Q  108 cgaggaaaacctcattagttaactgccga 136  Q
    ||||||||| ||||  || ||||||||||    
T  18512680 cgaggaaaatctcagcagctaactgccga 18512652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 8539644 - 8539570
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagttt 82  Q
    ||||||||||| |||||| | ||||||||||||||||||| |||||| | | || ||||||||||| ||||||||    
T  8539644 gttgacacattgagtttggctgagaaacacaagtaaattactcaaatacccctcggcagttaactgccgaagttt 8539570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 11348603 - 11348529
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagttt 82  Q
    ||||||||||| |||||| | ||||||||| ||||||||| ||||||| || || ||||||||||| ||||||||    
T  11348603 gttgacacattgagtttggctgagaaacacgagtaaattactcaaatgttcctcggcagttaactgccgaagttt 11348529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 41622118 - 41622188
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaa 78  Q
    |||||||||||||||||| | ||||||||| ||||||||| |||||||  |||| ||||||||||| ||||    
T  41622118 gttgacacatttagtttgactgagaaacacgagtaaattactcaaatgtccatcggcagttaactgccgaa 41622188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 35671027 - 35671172
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    ||||||||||||  ||||   ||||||||| ||||||||| | ||||| || || ||| |||||||||||| |||    |||||| |||||||||| |      
T  35671027 gttgacacatttgatttgattgagaaacacgagtaaattacttaaatgttcctcggcaattaactgtcgaaattttaaagaaccggctgcagttaactgc 35671126  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaacatgaa 153  Q
    |||||||||| |    ||||||||||||||||| ||||||||||||    
T  35671127 cgaggaaaactttggcagttaactgccgaggaatttcaaacatgaa 35671172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 35926362 - 35926433
Alignment:
Q  63 gcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaactgcc 134  Q
    ||||||||||||| || |||| |||||||| || ||||||| || |||||||||||||  ||||||||||||    
T  35926362 gcagttaactgtcaaaatttattggaaccggctacagttaactaccgaggaaaacctcggtagttaactgcc 35926433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 35651360 - 35651409
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgct 57  Q
    |||||||||||| ||||| | ||||||||| |||||||||||||||||||    
T  35651360 gttgacacatttggtttggctgagaaacacgagtaaattattcaaatgct 35651409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 13838552 - 13838424
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||| | ||||| | ||||||||| |||||||||  ||||| | | || ||||||||||| |||| | |   | ||||| |||||||||| ||     
T  13838552 gttgacacatgttgtttggctgagaaacacgagtaaattacccaaatacccctcggcagttaactgccgaattctgaagaaaccggctgcagttaactac 13838453  T
Q  108 cgaggaaaacctcattagttaactgccga 136  Q
    |||||||||||||   |||||||||||||    
T  13838452 cgaggaaaacctcggcagttaactgccga 13838424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 27532661 - 27532613
Alignment:
Q  92 gactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    |||||||||||| ||||||||||||||||   |||||||||||||||||    
T  27532661 gactgcagttaactatcgaggaaaacctcggcagttaactgccgaggaa 27532613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 25890021 - 25890071
Alignment:
Q  90 ccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    |||||||||||||| || |||||||||||||  |||| |||||||||||||    
T  25890021 ccgactgcagttaactaccgaggaaaacctcggtagtaaactgccgaggaa 25890071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 7762285 - 7762240
Alignment:
Q  95 tgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    ||||||||| | |||||||||||||||  |||||||||||||||||    
T  7762285 tgcagttaactgtcgaggaaaacctcaggagttaactgccgaggaa 7762240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 33222562 - 33222709
Alignment:
Q  9 ttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatc 108  Q
    |||| |||||| ||||| | ||||||||| ||||||||| |||||||||| || ||||||||||  |||| |||    |||||| |||||||||| |  |    
T  33222562 ttgatacatttggtttggctgagaaacacgagtaaattactcaaatgctcctcggcagttaactaccgaaattttaaagaaccggctgcagttaactgcc 33222661  T
Q  109 gaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    ||||||||| ||   ||||||||||||||||| ||||||| |||||||    
T  33222662 gaggaaaacttcggcagttaactgccgaggaatttcaaacctgaaatt 33222709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 29407984 - 29407867
Alignment:
Q  39 agtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgagg 138  Q
    ||||||||| |||||||  | || |||||||||||||||| |||    |||||| |||||||||| || |||||||||| ||   |||||||||||||||    
T  29407984 agtaaattactcaaatgtccctcggcagttaactgtcgaaattttaaagaaccggctgcagttaactaacgaggaaaacttcggcagttaactgccgagg 29407885  T
Q  139 aacttcaaacatgaaatt 156  Q
    || ||||||| |||||||    
T  29407884 aatttcaaacctgaaatt 29407867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 17426439 - 17426362
Alignment:
Q  63 gcagttaactgtcgaagtttactgga-accgactgcagttaagtatcgaggaaaacctcattagttaactgccgagga 139  Q
    ||||||||||| ||||||||   ||| |||| | ||||||||||  |||||||||||||| |||||||||||||||||    
T  17426439 gcagttaactgccgaagtttttaggacaccggcggcagttaagtgccgaggaaaacctcagtagttaactgccgagga 17426362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 2983365 - 2983477
Alignment:
Q  29 gagaaacacaagtaaattattcaaatgctca-tctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagtt 127  Q
    |||||||||| |||||||| ||||||||||  || ||||||| ||| |||| ||   ||||| || |||||||||| || |||||||||||||   ||||    
T  2983365 gagaaacacatgtaaattactcaaatgctccctcggcagttagctgccgaatttgtttggaatcggctgcagttaactaccgaggaaaacctcggcagtt 2983464  T
Q  128 aactgccgaggaa 140  Q
    |||||||| ||||    
T  2983465 aactgccgcggaa 2983477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 26544117 - 26543989
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||| | ||||| | ||||||||| |||||||||| ||||| |   || ||||||||||| |||| | |   | ||||| |||||||||| ||     
T  26544117 gttgacacatgttgtttggctgagaaacacgagtaaattatccaaatacctctcggcagttaactgccgaattctgaagaaaccggctgcagttaactac 26544018  T
Q  108 cgaggaaaacctcattagttaactgccga 136  Q
     ||||||||||||  ||||||||||||||    
T  26544017 tgaggaaaacctcggtagttaactgccga 26543989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 41183272 - 41183220
Alignment:
Q  88 aaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    ||||| |||||||||| || |||||||||||||  ||||||||||||||||||    
T  41183272 aaccggctgcagttaactaccgaggaaaacctcggtagttaactgccgaggaa 41183220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 41566236 - 41566181
Alignment:
Q  65 agttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctc 120  Q
    |||||||||||||| |||  |||||||||||||| |||| || |||||||||||||    
T  41566236 agttaactgtcgaatttttttggaaccgactgcaattaactaccgaggaaaacctc 41566181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 2271779 - 2271717
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||| | ||||||||||| ||   |||||||||||||| || |||||||||||||||    
T  2271779 ctgcagttaactgtcgaggaaaacttcggcagttaactgccgagaaatttcaaacatgaaatt 2271717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 4286039 - 4286109
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaa 78  Q
    |||||||||| | ||||| | ||||||||| ||||||||| |||||| | |||| ||||||||||| ||||    
T  4286039 gttgacacatgttgtttggctgagaaacacgagtaaattactcaaatacccatcggcagttaactgccgaa 4286109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 43982230 - 43982280
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttc 144  Q
    |||||||||| |  |||||||||||||  ||||||||||||||||||||||    
T  43982230 ctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttc 43982280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 14002464 - 14002529
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactg 73  Q
    |||||||||||| ||||| | ||||||||| ||||||||| |||||||  | || |||||||||||    
T  14002464 gttgacacatttggtttggctgagaaacacgagtaaattactcaaatgtccctcggcagttaactg 14002529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 36652852 - 36652925
Alignment:
Q  9 ttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagttt 82  Q
    ||||||||||| ||||| | |||| |||| ||||| ||| | |||||  |||| ||||||||||||||||||||    
T  36652852 ttgacacatttggtttggctgagacacacgagtaatttacttaaatgtccatcggcagttaactgtcgaagttt 36652925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 42499785 - 42499862
Alignment:
Q  63 gcagttaactgtcgaagtttactgga-accgactgcagttaagtatcgaggaaaacctcattagttaactgccgagga 139  Q
    ||||||||||| ||||||||   ||| |||| | ||||||||||  |||||||||||||  |||||||||||||||||    
T  42499785 gcagttaactgccgaagtttttaggacaccggcggcagttaagtgccgaggaaaacctcggtagttaactgccgagga 42499862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 19842453 - 19842596
Alignment:
Q  12 acacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgag 111  Q
    |||||||| ||||| | |||||||||||||||||||||||||||| | || ||||||||||| |||| |||    ||| || |||||||||| |   |||    
T  19842453 acacatttggtttgtctgagaaacacaagtaaattattcaaatgcccttcggcagttaactgccgaaattttaaagaatcggctgcagttaactgctgag 19842552  T
Q  112 gaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||| ||   |||||||||||| |||| |||||||||||||||    
T  19842553 gaaaacttcgacagttaactgccg-ggaatttcaaacatgaaatt 19842596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 32592162 - 32592310
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||| ||||| | ||||||||| ||||||||| |||||||  | || ||||||| |||||||| |||    |||| |||||||||||| |      
T  32592162 gttgacacatttggtttggctgagaaacacgagtaaattactcaaatgtccctcggcagttagctgtcgaaattttaaagaactgactgcagttaactgc 32592261  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||| ||   ||||| ||||||||||| ||||||| |||||||    
T  32592262 cgaggaaaacttcgacagttagctgccgaggaatttcaaacctgaaatt 32592310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 32593185 - 32593092
Alignment:
Q  63 gcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||||||||| |||    |||||| |||||||||| |  |||||||||| ||  |||||||||||||||||| ||||||| |||||||    
T  32593185 gcagttaactgtcgaaattttaaagaaccggctgcagttaacttccgaggaaaacttcgatagttaactgccgaggaatttcaaacctgaaatt 32593092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 24700687 - 24700735
Alignment:
Q  29 gagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcga 77  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  24700687 gagaaacacgagtaaattactcaaatgctcatcggcagttaactgtcga 24700735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 9429891 - 9429845
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||||    
T  9429891 ctgcagttaagtaccgaggaaaacctcggtagttaactgccgaggaa 9429845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 49140889 - 49140839
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttc 144  Q
    |||||||||| |  |||||||||||||| ||||||||||||||||||||||    
T  49140889 ctgcagttaactgccgaggaaaacctcagtagttaactgccgaggaacttc 49140839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 1294205 - 1294077
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||| | ||||| | ||||||||| |||||||||  ||||| | | || ||||||||||| |||| | |   | |||||||||||||||| |      
T  1294205 gttgacacatgttgtttgactgagaaacacgagtaaattacccaaatacccctcggcagttaactgccgaattctgaagaaaccgactgcagttaacttc 1294106  T
Q  108 cgaggaaaacctcattagttaactgccga 136  Q
    |||||||||||||   |||||||||||||    
T  1294105 cgaggaaaacctcggcagttaactgccga 1294077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 14044022 - 14043878
Alignment:
Q  12 acacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgag 111  Q
    |||||||||||||| | ||||||||| ||||| |||  ||||| | | || ||||||||||||||||||||     || || |||||||||| |  ||||    
T  14044022 acacatttagtttggctgagaaacacgagtaatttacccaaatacccttcggcagttaactgtcgaagttttagaaaatcggctgcagttaactgccgag 14043923  T
Q  112 gaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||| ||   |||||||||||||| || ||||| | |||||||    
T  14043922 gaaaacttcggcagttaactgccgagaaatttcaagcctgaaatt 14043878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 31977625 - 31977733
Alignment:
Q  29 gagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagtta 128  Q
    ||||||||| ||||| |||  |||||||||||| ||||||||||||||||  ||| ||||| ||  || |||||| ||||||||||||| ||  |||| |    
T  31977625 gagaaacacgagtaatttacccaaatgctcatcggcagttaactgtcgaa--tta-tggaagcggttgtagttaactatcgaggaaaacttcggtagtaa 31977721  T
Q  129 actgccgaggaa 140  Q
    ||| ||||||||    
T  31977722 actaccgaggaa 31977733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 40798220 - 40798304
Alignment:
Q  30 agaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaac 117  Q
    ||||| |||| ||| ||||||||||| ||||| ||||||||||||||||  ||| ||||| || |||||||||| | |||||||||||    
T  40798220 agaaaaacaattaatttattcaaatgttcatcggcagttaactgtcgaa--tta-tggaatcggctgcagttaactgtcgaggaaaac 40798304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 52570614 - 52570558
Alignment:
Q  88 aaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttc 144  Q
    |||||||||||||||| || |||| ||||||||  ||||||||||||||||| ||||    
T  52570614 aaccgactgcagttaactaccgagaaaaacctcggtagttaactgccgaggatcttc 52570558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 11248533 - 11248572
Alignment:
Q  39 agtaaattattcaaatgctcatctgcagttaactgtcgaa 78  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  11248533 agtaaattattcaaatgctcctcggcagttaactgtcgaa 11248572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 34049111 - 34049161
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttc 144  Q
    |||||||||| |  |||||||||||||  ||||||||||||||||||||||    
T  34049111 ctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttc 34049161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 34691656 - 34691702
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    |||||||||| | ||||||||||||||  ||||||||||||||||||    
T  34691656 ctgcagttaactgtcgaggaaaacctcggtagttaactgccgaggaa 34691702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 36817563 - 36817517
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    |||||||||| ||||||||||| ||||  ||||||||||||||||||    
T  36817563 ctgcagttaactatcgaggaaatcctcggtagttaactgccgaggaa 36817517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 48246443 - 48246489
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    |||||||||| | ||||||||||||||  ||||||||||||||||||    
T  48246443 ctgcagttaactgtcgaggaaaacctcggtagttaactgccgaggaa 48246489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 54389826 - 54389876
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttc 144  Q
    |||||||||| |  |||||||||||||  ||||||||||||||||||||||    
T  54389826 ctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttc 54389876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 4274052 - 4274101
Alignment:
Q  29 gagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaa 78  Q
    |||||||||| ||||||||||||||||| | || ||||||||||| ||||    
T  4274052 gagaaacacatgtaaattattcaaatgcccctcggcagttaactgccgaa 4274101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 29918389 - 29918340
Alignment:
Q  88 aaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgag 137  Q
    ||||| |||||||||| |  ||||||||||||| ||||||||||||||||    
T  29918389 aaccggctgcagttaactgccgaggaaaacctcgttagttaactgccgag 29918340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 29967542 - 29967493
Alignment:
Q  88 aaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgag 137  Q
    ||||| |||||||||| |  ||||||||||||| ||||||||||||||||    
T  29967542 aaccggctgcagttaactgccgaggaaaacctcgttagttaactgccgag 29967493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 49138613 - 49138690
Alignment:
Q  63 gcagttaactgtcgaagtttactgga-accgactgcagttaagtatcgaggaaaacctcattagttaactgccgagga 139  Q
    ||||||||||| ||||||||   ||| |||| | ||||||||||  |||||||||||||  |||||||||||||||||    
T  49138613 gcagttaactgccgaagtttttaggacaccggcggcagttaagtgccgaggaaaacctcggtagttaactgccgagga 49138690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 55176417 - 55176344
Alignment:
Q  64 cagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    |||||||||||||||  ||| ||||||||  ||||||||| ||||||||||||| ||   |||||||||||||||||    
T  55176417 cagttaactgtcgaa--tta-tggaaccggatgcagttaactatcgaggaaaacttcggcagttaactgccgaggaa 55176344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 17840992 - 17840886
Alignment:
Q  34 acacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaactgc 133  Q
    |||| ||||||||| ||||||| ||||| ||||||||||| ||||||||     | |||||||||||||| |  |||||||||||||  |||||||||||    
T  17840992 acacgagtaaattactcaaatgttcatcggcagttaactgccgaagttttagaaatccgactgcagttaactgccgaggaaaacctcggtagttaactgc 17840893  T
Q  134 cgaggaa 140  Q
    |||||||    
T  17840892 cgaggaa 17840886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 14102476 - 14102328
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||| ||||| | ||||||||  ||||||||| |||||||| | ||  |||||||||| |||| |||    ||| || ||||| |||| |      
T  14102476 gttgacacatttggtttggctgagaaacatgagtaaattactcaaatgcccctcgacagttaactgccgaaattttaaagaatcggctgcaattaactgc 14102377  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||| ||   ||||||||||||||||| |||||||||||||||    
T  14102376 cgaggaaaacttcggcagttaactgccgaggaatttcaaacatgaaatt 14102328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 20353973 - 20353926
Alignment:
Q  93 actgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  20353973 actgcagttaactatcgaggaaaacctcagtagttaactgccgaggaa 20353926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 25195240 - 25195325
Alignment:
Q  29 gagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaac 117  Q
    |||||| || ||||| ||||||||||| ||||| ||||||||||||||||  ||| ||||| || |||||||||| |||||||||||||    
T  25195240 gagaaatacgagtaatttattcaaatgttcatcggcagttaactgtcgaa--tta-tggaatcgtctgcagttaactatcgaggaaaac 25195325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 38265417 - 38265530
Alignment:
Q  32 aaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaact 131  Q
    ||||||| |||||||| |||||||| |||| ||| ||||||| ||||  ||| |||||||| |||||||||| ||  ||||||||||||   ||||||||    
T  38265417 aaacacatgtaaattactcaaatgcccatcggcaattaactgccgaa--tta-tggaaccggctgcagttaactactgaggaaaacctcggcagttaact 38265513  T
Q  132 gccgaggaacttcaaac 148  Q
    |||| |||| |||||||    
T  38265514 gccgtggaaattcaaac 38265530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 40587688 - 40587737
Alignment:
Q  90 ccgactgcagttaagtatcgaggaaaacctcattagttaactgccgagga 139  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  40587688 ccgactgcagttaactgtcgaggaaaacctcagtagttaactgccgagga 40587737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 11885904 - 11886051
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||| ||||| | ||||||||| |||||||||||||||||  | || ||| |||| | ||||| |||    ||||||||||||||||| |      
T  11885904 gttgacacatttcgtttggctgagaaacacgagtaaattattcaaatgtccctcggcaattaattatcgaaattttaaagaaccgactgcagttaactgc 11886003  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||| ||   | ||||||| ||||||| ||||||| |||||||    
T  11886004 cgaggaaaacttcggca-ttaactgtcgaggaatttcaaacctgaaatt 11886051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 14412493 - 14412345
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||| ||||| | ||||||||  ||||||||| |||||||| | ||  |||||||||| |||| |||    ||| || ||||| |||| |      
T  14412493 gttgacacatttggtttggctgagaaacatgagtaaattactcaaatgcccctcgacagttaactgccgaaattttaaagaatcggctgcaattaactgc 14412394  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||| ||   ||||||||||||||||| ||||||| |||||||    
T  14412393 cgaggaaaacttcggcagttaactgccgaggaatttcaaacttgaaatt 14412345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 34139797 - 34139732
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactg 73  Q
    ||||||||||| |||||| | ||||||||| ||||||||| |||||||| | || |||||||||||    
T  34139797 gttgacacattgagtttggctgagaaacacgagtaaattactcaaatgcccctcggcagttaactg 34139732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 9367766 - 9367716
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttc 144  Q
    |||||||||| |  |||||||||||||  ||||||||||||||||||||||    
T  9367766 ctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttc 9367716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 9365678 - 9365755
Alignment:
Q  63 gcagttaactgtcgaagtttactgga-accgactgcagttaagtatcgaggaaaacctcattagttaactgccgagga 139  Q
    ||||||||||| ||||||||   ||| |||| | ||||||||||  |||||||||||||  |||||||||||||||||    
T  9365678 gcagttaactgccgaagtttttaggacaccggcggcagttaagtgccgaggaaaacctcggtagttaactgccgagga 9365755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 10098365 - 10098442
Alignment:
Q  63 gcagttaactgtcgaagtttactgga-accgactgcagttaagtatcgaggaaaacctcattagttaactgccgagga 139  Q
    ||||||||||| ||||||||   ||| |||| | ||||||||||  |||||||||||||  |||||||||||||||||    
T  10098365 gcagttaactgccgaagtttttaggacaccggcggcagttaagtgccgaggaaaacctcggtagttaactgccgagga 10098442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 42499436 - 42499485
Alignment:
Q  90 ccgactgcagttaagtatcgaggaaaacctcattagttaactgccgagga 139  Q
    |||||||||||||| |  |||||||||||||  |||||||||||||||||    
T  42499436 ccgactgcagttaactgccgaggaaaacctcggtagttaactgccgagga 42499485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 46332104 - 46332055
Alignment:
Q  29 gagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaa 78  Q
    |||||||||||  || ||||||||||| ||||| ||||||||||||||||    
T  46332104 gagaaacacaatcaatttattcaaatgttcatcggcagttaactgtcgaa 46332055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 48000187 - 48000268
Alignment:
Q  29 gagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgagga 113  Q
    ||||||||| ||||| |||| ||||| | | || ||||||||||||||||  ||| ||||||||||||||||||| | |||||||    
T  48000187 gagaaacactagtaatttatccaaatacccctcggcagttaactgtcgaa--tta-tggaaccgactgcagttaactgtcgagga 48000268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 54510 - 54658
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||||||||  |  |||||||||||||||||| |||||||  | || ||| ||||||||| || |||    |||||| |||||||||| |      
T  54510 gttgacacatttagtttagcttagaaacacaagtaaattactcaaatgtccctcggcaattaactgtcaaaattttgaagaaccggctgcagttaactgc 54609  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||| ||   ||||||||||||||||| || ||| ||||||||    
T  54610 cgaggaaaacatcgacagttaactgccgaggaattttaaatatgaaatt 54658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 50036792 - 50036901
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaa-ccgactgcagttaagta 106  Q
    ||||||||||||  |||| | ||||||||||||||||||| |||||||  | || ||||||||||| |||||||| || ||| ||| |||||||||| ||    
T  50036792 gttgacacatttgatttggctgagaaacacaagtaaattactcaaatgtccctcggcagttaactgccgaagttttctagaacccggctgcagttaacta 50036891  T
Q  107 tcgaggaaaa 116  Q
     ||| |||||    
T  50036892 ccgaagaaaa 50036901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 41909809 - 41909694
Alignment:
Q  32 aaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaact 131  Q
    |||||||| ||||||| |||||||||||||  ||||||||||||||| |||    ||| || |||||||||| |  |||||||||  ||   ||||||||    
T  41909809 aaacacaaataaattactcaaatgctcatcgacagttaactgtcgaaattttaaagaatcggctgcagttaactggcgaggaaaatttcggcagttaact 41909710  T
Q  132 gccgaggaacttcaaa 147  Q
    ||||||||| ||||||    
T  41909709 gccgaggaatttcaaa 41909694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 49429262 - 49429189
Alignment:
Q  9 ttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagttt 82  Q
    |||||||||| ||||||   | ||||||| ||||||||| |||||||||| || ||||||||||| ||||||||    
T  49429262 ttgacacattgagtttggttgtgaaacacgagtaaattactcaaatgctcttcggcagttaactgccgaagttt 49429189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 13761172 - 13761032
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaagtat 107  Q
    |||||||||||| |||||   ||||||||| ||||||||| |||||||| | || ||||||||||| |  | |||    |||||| |||||||||| |      
T  13761172 gttgacacatttggtttggatgagaaacacgagtaaattactcaaatgcccctcggcagttaactgcctcaattttaaagaaccggctgcagttaactgc 13761073  T
Q  108 cgaggaaaacctcattagttaactgccgaggaacttcaaac 148  Q
    |||||||||| ||   ||||||||||||| ||| |||||||    
T  13761072 cgaggaaaacttcgacagttaactgccgacgaatttcaaac 13761032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 46216429 - 46216484
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgagg-aacttcaaac 148  Q
    |||||||||| ||||||||||||| ||  |||||||||||||||| ||||||||||    
T  46216429 ctgcagttaactatcgaggaaaacttcggtagttaactgccgaggaaacttcaaac 46216484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 18609968 - 18609875
Alignment:
Q  63 gcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    ||||||||||| ||||||||     ||||| | |||||||| || |||||||||| ||   ||||||||||||||||| ||||||| |||||||    
T  18609968 gcagttaactgccgaagttttagtaaaccggcggcagttaactaccgaggaaaacttcggcagttaactgccgaggaatttcaaacctgaaatt 18609875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 29424380 - 29424457
Alignment:
Q  63 gcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    |||||||| || |||||||||    ||||| |||||||||| || |||||||||| ||  ||||||||||||||||||    
T  29424380 gcagttaattgccgaagtttaaaaaaaccggctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaa 29424457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 9049132 - 9049072
Alignment:
Q  88 aaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaaac 148  Q
    ||||| |||||||||| || |||||||||| ||  ||||||||||||||||||||||||||    
T  9049132 aaccggctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaacttcaaac 9049072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 14124846 - 14124751
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactggaaccgactgcagttaa 103  Q
    ||||||||||||  |||| |  |||||||| ||||||||| |||||||| | ||  || |||||||||||||||| |||||| || ||||||||||    
T  14124846 gttgacacatttgatttggctaagaaacacgagtaaattactcaaatgcccctcgacaattaactgtcgaagttttctggaatcggctgcagttaa 14124751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 12784005 - 12783949
Alignment:
Q  88 aaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttc 144  Q
    ||||| |||||||||  | ||||||||||||||| ||||||||||||||||| ||||    
T  12784005 aaccggctgcagttagctgtcgaggaaaacctcagtagttaactgccgaggatcttc 12783949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 28249855 - 28249962
Alignment:
Q  34 acacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactgg-aaccgactgcagttaagtatcgaggaaaacctcattagttaactg 132  Q
    |||| ||||||||| |||||||||| ||  ||||||| || ||||||||   || ||||| | |||||||| |  |||||||||||||  ||||||||||    
T  28249855 acacgagtaaattactcaaatgctcctcgacagttaaatgccgaagtttttagggaaccggcggcagttaactgccgaggaaaacctcggtagttaactg 28249954  T
Q  133 ccgaggaa 140  Q
    ||||||||    
T  28249955 ccgaggaa 28249962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 9048075 - 9048161
Alignment:
Q  63 gcagttaactgtcgaagtttactggaaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgagg-aacttcaaac 148  Q
    ||||||||||| ||||||||     ||||| |||||||||| || |||||||||| ||  |||||||||||||||| ||||||||||    
T  9048075 gcagttaactgccgaagtttgaaaaaaccggctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaac 9048161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 11157771 - 11157829
Alignment:
Q  98 agttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||| | ||||||||||| ||  |||||||||||||||||| ||||||| |||||||    
T  11157771 agttaactgtcgaggaaaacttcgatagttaactgccgaggaatttcaaacctgaaatt 11157829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 11840292 - 11840246
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    |||||||||| | ||||||||||||||  ||||||||||||||||||    
T  11840292 ctgcagttaactgtcgaggaaaacctcggtagttaactgccgaggaa 11840246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 13388750 - 13388704
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    |||||||||| | ||||||||||||||  ||||||||||||||||||    
T  13388750 ctgcagttaactgtcgaggaaaacctcggtagttaactgccgaggaa 13388704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 6207134 - 6207057
Alignment:
Q  63 gcagttaactgtcgaagtttactgga-accgactgcagttaagtatcgaggaaaacctcattagttaactgccgagga 139  Q
    ||||||||||| ||||||||   ||| |||| | ||||||||||  |||||||||||||  |||||||||||||||||    
T  6207134 gcagttaactgccgaagtttttaggacaccggcggcagttaagtgccgaggaaaacctcggtagttaactgccgagga 6207057  T

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Target: scaffold0176 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 722 - 657
Alignment:
Q  8 gttgacacatttagtttgccagagaaacacaagtaaattattcaaatgctcatctgcagttaactg 73  Q
    ||||||||||| |||||| | ||||||||| ||||||||| |||||||| | || |||||||||||    
T  722 gttgacacattgagtttggctgagaaacacgagtaaattactcaaatgcccctcggcagttaactg 657  T

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Target: scaffold0065 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 65266 - 65403
Alignment:
Q  12 acacatttagtttgccagagaaacacaagtaaattattcaaatgctcat-ctgcagttaactgtcgaagtttactggaaccgactgcagttaagtatcga 110  Q
    |||||||| ||||| | ||||||||  ||||||||| |||||   |||| | ||||||||||| |||| ||||   ||| || |||||||||| | ||||    
T  65266 acacatttcgtttggctgagaaacatgagtaaattactcaaaatgtcattcggcagttaactgccgaaatttaaaagaatcggctgcagttaactgtcga 65365  T
Q  111 ggaaaacctcattagttaactgccgaggaacttcaaac 148  Q
    ||||||| ||   ||||||||||||||||| |||||||    
T  65366 ggaaaacttcggcagttaactgccgaggaatttcaaac 65403  T

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Target: scaffold0794 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 5296 - 5348
Alignment:
Q  88 aaccgactgcagttaagtatcgaggaaaacctcattagttaactgccgaggaa 140  Q
    ||||| |||||||||| || |||||||||||||  ||||||||||||||||||    
T  5296 aaccggctgcagttaactaccgaggaaaacctcggtagttaactgccgaggaa 5348  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 50017 - 50124
Alignment:
Q  34 acacaagtaaattattcaaatgctcatctgcagttaactgtcgaagtttactgg-aaccgactgcagttaagtatcgaggaaaacctcattagttaactg 132  Q
    |||| ||||||||| |||||||||| ||  ||||||| || ||||||||   || ||||| | |||||||| |  |||||||||||||  ||||||||||    
T  50017 acacgagtaaattactcaaatgctcctcgacagttaaatgccgaagtttttagggaaccggcggcagttaactgccgaggaaaacctcggtagttaactg 50116  T
Q  133 ccgaggaa 140  Q
    ||||||||    
T  50117 ccgaggaa 50124  T

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Target: scaffold1379 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 476 - 414
Alignment:
Q  94 ctgcagttaagtatcgaggaaaacctcattagttaactgccgaggaacttcaaacatgaaatt 156  Q
    |||||||||| | ||||||||||||||   |||||||| ||||||||||| |||| |||||||    
T  476 ctgcagttaactgtcgaggaaaacctcgggagttaactaccgaggaacttaaaacctgaaatt 414  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 84579 - 84656
Alignment:
Q  63 gcagttaactgtcgaagtttactgga-accgactgcagttaagtatcgaggaaaacctcattagttaactgccgagga 139  Q
    ||||||||||| ||||||||   ||| |||| | ||||||||||  |||||||||||||  |||||||||||||||||    
T  84579 gcagttaactgccgaagtttttaggacaccggcggcagttaagtgccgaggaaaacctcggtagttaactgccgagga 84656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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