View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0028b5 (Length: 541)
Name: NF0028b5
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0028b5 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 9 - 541
Target Start/End: Complemental strand, 56232291 - 56231755
Alignment:
| Q |
9 |
ttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatag----accttgaggatctctggtgtgattgggttagg |
104 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
56232291 |
ttaggaaacaaaatatgtagtatgatttatgacgcaatgtttgaaattaataatgaaagaataggcaaaccttgaggatctctggtgtgattgggttagg |
56232192 |
T |
|
| Q |
105 |
ccctctagaggagaaagccgccatgcttggagcaggttttatgttcaactttgttgtgggtggatgaatatatcctagtggattcctgttatgtgataat |
204 |
Q |
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| T |
56232191 |
ccctctagaggagaaagccgccatgcttggagcaggttttatgttcaactttgttgtgggtggatgaatatatcctagtggattcctgttatgtgataat |
56232092 |
T |
|
| Q |
205 |
aacgacattgattaaaggtaaggtgttaagagaacaatgttgaaataattgaattatctatgaagaccaactatacaaatgaagggatgagaaaaggaga |
304 |
Q |
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| T |
56232091 |
aacgacattgattaaaggtaaggtgttaagagaacaatgttgaaataattgaattatctatgaagaccaactatacaaatgaagggatgagaaaaggaga |
56231992 |
T |
|
| Q |
305 |
gagcaacaaaagttacttggttgaattgatgtaggcaaagagagcaacgccatctgcataagtaatctgtgttgcaggcaggaaatgaggatcagcaata |
404 |
Q |
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| T |
56231991 |
gagcaacaaaagttacttggttgaattgatgtaggcaaagagagcaacgccatctgcataagtaatctgtgttgcaggtaggaaatgaggatcagcaata |
56231892 |
T |
|
| Q |
405 |
agctcattgccattagactgatcattacaaagaatcattccaactgcttcagcctccaaagcaacaaaacttttttccactcttgcactgattcctctaa |
504 |
Q |
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| T |
56231891 |
agctcattgccattagactgatcattacaaagaatcattccaactgcttcagcctccaaagcaacaaaactcttttccactcttgcactgattcctctaa |
56231792 |
T |
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| Q |
505 |
gacaaaccaatattcggccccttgctttctcggggtc |
541 |
Q |
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| T |
56231791 |
gacaaaccaatattcggccccttgctttctcggggtc |
56231755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 541
Target Start/End: Complemental strand, 39190080 - 39189549
Alignment:
| Q |
9 |
ttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatag----accttgaggatctctggtgtgattgggttagg |
104 |
Q |
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|||||||| |||||||| || ||||||| |||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
39190080 |
ttaggaaataaaatatgtagtatgatttgtgacaca-tgtttgaaattaataatgaaagaataggcaaaccttgaggatctctggtgtgattgtgttagg |
39189982 |
T |
|
| Q |
105 |
ccctctagaggagaaagccgccatgcttggagcaggttttatgttcaactttgttgtgggtggatgaatatatcctagtggattcctgttatgtgataat |
204 |
Q |
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| T |
39189981 |
ccctctagaggagaagaccgccatgcttggagcaggttttattttcaactttgttgtgggtggatgaatatatcctagtggattcctattatatgataat |
39189882 |
T |
|
| Q |
205 |
aacgacattgattaaaggtaaggtgttaagagaacaatgttgaaataattgaattatctatgaagacca--actatacaaatgaagggatgagaaaagga |
302 |
Q |
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| T |
39189881 |
aacgacattaatta-----acggtgttaagagaacaatgttgaattaattgaattatctatgaagaaaaggagggagcaaatgaagggatgacaaaagga |
39189787 |
T |
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| Q |
303 |
gagagcaacaaaagttacttggttgaattgatgtaggcaaagagagcaacgccatctgcataagtaatctgtgttgcaggcaggaaatgaggatcagcaa |
402 |
Q |
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| T |
39189786 |
g-gagcaacaaaagttacttggttgaattgatgtaggcaaagacagcaacaccatcttcataaataatatgtgctgtaggtaggaaatgaggatcatcag |
39189688 |
T |
|
| Q |
403 |
taagctcattgccattagactgatcattacaaagaatcattccaactgcttcagcctccaaagcaacaaaacttttttccactcttgcactgattcctct |
502 |
Q |
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||||||||||||||| |||| |||| ||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| | || | || |||| |
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| T |
39189687 |
taagctcattgccatgagaccgatcgttaaaaagaatcattccaactgctttagcctccaaagcaacaagactcttttccactttcccattaatacctcg |
39189588 |
T |
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| Q |
503 |
aagacaaaccaatattcggccccttgctttctcggggtc |
541 |
Q |
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| T |
39189587 |
aagacaaaccaatattcggccacttgctttctcggggtc |
39189549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 39218821 - 39218756
Alignment:
| Q |
9 |
ttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatagac |
74 |
Q |
| |
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|||||||| |||||||| || ||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
39218821 |
ttaggaaataaaatatgtagtatgatttgtgacacaatgtttgaaattaataatgaaagaatagac |
39218756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 11096751 - 11096813
Alignment:
| Q |
134 |
gagcaggttttatgttcaactttgttgtgggtggatgaatatatcctagtggattcctgttat |
196 |
Q |
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| T |
11096751 |
gagcaggctttatgctcaactttgttgagagtggatgaatgtatcctagtggattcttgttat |
11096813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 43014361 - 43014434
Alignment:
| Q |
333 |
atgtaggcaaagagagcaacgccatctgcataagtaatctgtgttgcaggcaggaaatgaggatcagcaataag |
406 |
Q |
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||||||||||| | |||||| |||||| ||||| ||||||||| ||| | || ||||| ||||||||||||||| |
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| T |
43014361 |
atgtaggcaaacacagcaacaccatcttcataattaatctgtgatgctgacaagaaattaggatcagcaataag |
43014434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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