View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0028b6 (Length: 590)

Name: NF0028b6
Description: NF0028-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0028b6
NF0028b6
[»] chr3 (12 HSPs)
chr3 (85-422)||(23684191-23684534)
chr3 (85-422)||(24056428-24056771)
chr3 (85-422)||(23668650-23668993)
chr3 (85-422)||(24040926-24041269)
chr3 (418-575)||(23683990-23684144)
chr3 (418-575)||(24056227-24056381)
chr3 (85-289)||(23673237-23673444)
chr3 (85-289)||(24045513-24045720)
chr3 (418-577)||(23668437-23668603)
chr3 (418-577)||(24040713-24040879)
chr3 (288-348)||(23673164-23673226)
chr3 (288-348)||(24045440-24045502)
[»] chr8 (4 HSPs)
chr8 (85-150)||(35681425-35681490)
chr8 (288-407)||(35681643-35681756)
chr8 (288-342)||(35686808-35686862)
chr8 (85-150)||(35686588-35686655)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 85 - 422
Target Start/End: Complemental strand, 23684534 - 23684191
Alignment:
Q  85 ccatcgatatgtggtccgtaggatgcatttttgctgagatgtttggtagaaagccaatcttccctgagaaaaattccatgcatcagatcaaactaattat 184  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||| |||||||  ||  ||||  |||| || || |||||||||||    
T  23684534 ccatcgatatgtggtccgttggatccatttttgctgagatgcttggtaggaagccaattttccctggaaaggattcgttgcaccaaatgaaactaattat 23684435  T
Q  185 aagtgttgttggaagccaagagtctgatcttgagttaatagttaatccaaaaactaaggaattcatcaaatcacttccctatacaaaggggacacacttc 284  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  23684434 aagtgttcttggaagccaagagtctgatcttgagttaatagttaatccgaaaacaaaggcattcatcaaatcacttccctatacaaaggggacacacttc 23684335  T
Q  285 tct------------caagcagatccattagccatagatttgttacaaaaagtgcttgtgttcgatccaaataaaaagaattatattactgcatcagaag 372  Q
    |||            |||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||     ||||||||||||||||    
T  23684334 tctcagctacacccacaagcagatccattagccatagatttgttacaaaaaatgcttgtgtttgatcc-aacaaaaaga-----attactgcatcagaag 23684241  T
Q  373 tacttcaacatccatatatggctgatctatgtgatgatcaatggcataac 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23684240 tacttcaacatccatatatggctgatctatgtgatgatcaatggcgtaac 23684191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 85 - 422
Target Start/End: Complemental strand, 24056771 - 24056428
Alignment:
Q  85 ccatcgatatgtggtccgtaggatgcatttttgctgagatgtttggtagaaagccaatcttccctgagaaaaattccatgcatcagatcaaactaattat 184  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||| |||||||  ||  ||||  |||| || || |||||||||||    
T  24056771 ccatcgatatgtggtccgttggatccatttttgctgagatgcttggtaggaagccaattttccctggaaaggattcgttgcaccaaatgaaactaattat 24056672  T
Q  185 aagtgttgttggaagccaagagtctgatcttgagttaatagttaatccaaaaactaaggaattcatcaaatcacttccctatacaaaggggacacacttc 284  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  24056671 aagtgttcttggaagccaagagtctgatcttgagttaatagttaatccgaaaacaaaggcattcatcaaatcacttccctatacaaaggggacacacttc 24056572  T
Q  285 tct------------caagcagatccattagccatagatttgttacaaaaagtgcttgtgttcgatccaaataaaaagaattatattactgcatcagaag 372  Q
    |||            |||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||     ||||||||||||||||    
T  24056571 tctcagctacacccacaagcagatccattagccatagatttgttacaaaaaatgcttgtgtttgatcc-aacaaaaaga-----attactgcatcagaag 24056478  T
Q  373 tacttcaacatccatatatggctgatctatgtgatgatcaatggcataac 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24056477 tacttcaacatccatatatggctgatctatgtgatgatcaatggcgtaac 24056428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 85 - 422
Target Start/End: Complemental strand, 23668993 - 23668650
Alignment:
Q  85 ccatcgatatgtggtccgtaggatgcatttttgctgagatgtttggtagaaagccaatcttccctgagaaaaattccatgcatcagatcaaactaattat 184  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |  ||  | ||  |||| || || |||||||||||    
T  23668993 ccatcgatgtgtggtccgtaggatgcctttttgctgagatgcttggtagaaagccaattttccccggaaaggactcattgcaccaaatgaaactaattat 23668894  T
Q  185 aagtgttgttggaagccaagagtctgatcttgagttaatagttaatccaaaaactaaggaattcatcaaatcacttccctatacaaaggggacacacttc 284  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||| |||||||||    
T  23668893 aagtgttcttggaagccaaaagtctgatcttgatttaatagttaatccaaaaaccaaggcatttatcaaatcacttccctatacacagggtacacacttc 23668794  T
Q  285 tct------------caagcagatccattagccatagatttgttacaaaaagtgcttgtgttcgatccaaataaaaagaattatattactgcatcagaag 372  Q
    |||            |||||||||||||||||||| ||| | ||||||||| |||||||||| ||||||| | ||||||     ||| ||||||||||||    
T  23668793 tctcagctatacccacaagcagatccattagccatggatctattacaaaaaatgcttgtgtttgatccaact-aaaaga-----atttctgcatcagaag 23668700  T
Q  373 tacttcaacatccatatatggctgatctatgtgatgatcaatggcataac 422  Q
     ||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  23668699 cactccaacatccatatatggctgatctatgtgatgatcaatggcgtaac 23668650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 85 - 422
Target Start/End: Complemental strand, 24041269 - 24040926
Alignment:
Q  85 ccatcgatatgtggtccgtaggatgcatttttgctgagatgtttggtagaaagccaatcttccctgagaaaaattccatgcatcagatcaaactaattat 184  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |  ||  | ||  |||| || || |||||||||||    
T  24041269 ccatcgatgtgtggtccgtaggatgcctttttgctgagatgcttggtagaaagccaattttccccggaaaggactcattgcaccaaatgaaactaattat 24041170  T
Q  185 aagtgttgttggaagccaagagtctgatcttgagttaatagttaatccaaaaactaaggaattcatcaaatcacttccctatacaaaggggacacacttc 284  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||| |||||||||    
T  24041169 aagtgttcttggaagccaaaagtctgatcttgatttaatagttaatccaaaaaccaaggcatttatcaaatcacttccctatacacagggtacacacttc 24041070  T
Q  285 tct------------caagcagatccattagccatagatttgttacaaaaagtgcttgtgttcgatccaaataaaaagaattatattactgcatcagaag 372  Q
    |||            |||||||||||||||||||| ||| | ||||||||| |||||||||| ||||||| | ||||||     ||| ||||||||||||    
T  24041069 tctcagctatacccacaagcagatccattagccatggatctattacaaaaaatgcttgtgtttgatccaact-aaaaga-----atttctgcatcagaag 24040976  T
Q  373 tacttcaacatccatatatggctgatctatgtgatgatcaatggcataac 422  Q
     ||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  24040975 cactccaacatccatatatggctgatctatgtgatgatcaatggcgtaac 24040926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 418 - 575
Target Start/End: Complemental strand, 23684144 - 23683990
Alignment:
Q  418 ataacaagatgattagagaaatg---tggaatgagatgcttcattaccatatatcctgaagctgcttttgtcaatgcatagatgtttctacttcacatat 514  Q
    ||||||| |||||||||||||||   ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||     
T  23684144 ataacaaaatgattagagaaatgatgtggaatgagatgcttcattaccat----cctgaagctgcttttgtcaatgcatagatgtttctacttcacata- 23684050  T
Q  515 agtttgtctctaggagaaactgttacctgaagtaatattatttgtcttgctacaaagaagt 575  Q
     ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  23684049 -gtttgtctctaggagaaactgctacctgaagtaatagtatttgtcttgctacaaagaagt 23683990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 418 - 575
Target Start/End: Complemental strand, 24056381 - 24056227
Alignment:
Q  418 ataacaagatgattagagaaatg---tggaatgagatgcttcattaccatatatcctgaagctgcttttgtcaatgcatagatgtttctacttcacatat 514  Q
    ||||||| |||||||||||||||   ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||     
T  24056381 ataacaaaatgattagagaaatgatgtggaatgagatgcttcattaccat----cctgaagctgcttttgtcaatgcatagatgtttctacttcacata- 24056287  T
Q  515 agtttgtctctaggagaaactgttacctgaagtaatattatttgtcttgctacaaagaagt 575  Q
     ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  24056286 -gtttgtctctaggagaaactgctacctgaagtaatagtatttgtcttgctacaaagaagt 24056227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 85 - 289
Target Start/End: Complemental strand, 23673444 - 23673237
Alignment:
Q  85 ccatcgatatgtggtccgtaggatgcatttttgctgagatgtttggtagaaagccaatcttccctgagaaaaattccatgcatcagatcaaactaattat 184  Q
    |||||||| | ||||||||| | |||||||||||||||||  |||||||||||||||| |||||||  ||  ||||  |||| || || |||||||||||    
T  23673444 ccatcgatgtatggtccgtaaggtgcatttttgctgagattcttggtagaaagccaattttccctggaaaggattcgttgcaccaaatgaaactaattat 23673345  T
Q  185 aagtgttgttggaagccaaga---gtctgatcttgagttaatagttaatccaaaaactaaggaattcatcaaatcacttccctatacaaaggggacacac 281  Q
    || |||| || |||||||| |   ||||||||||||||| || | |||||||||| | ||||||||||||||||||| |||||||| | |||||||||||    
T  23673344 aattgttcttcgaagccaacatgcgtctgatcttgagttcatcgataatccaaaagccaaggaattcatcaaatcacctccctatatacaggggacacac 23673245  T
Q  282 ttctctca 289  Q
    ||||||||    
T  23673244 ttctctca 23673237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 85 - 289
Target Start/End: Complemental strand, 24045720 - 24045513
Alignment:
Q  85 ccatcgatatgtggtccgtaggatgcatttttgctgagatgtttggtagaaagccaatcttccctgagaaaaattccatgcatcagatcaaactaattat 184  Q
    |||||||| | ||||||||| | |||||||||||||||||  |||||||||||||||| |||||||  ||  ||||  |||| || || |||||||||||    
T  24045720 ccatcgatgtatggtccgtaaggtgcatttttgctgagattcttggtagaaagccaattttccctggaaaggattcgttgcaccaaatgaaactaattat 24045621  T
Q  185 aagtgttgttggaagccaaga---gtctgatcttgagttaatagttaatccaaaaactaaggaattcatcaaatcacttccctatacaaaggggacacac 281  Q
    || |||| || |||||||| |   ||||||||||||||| || | |||||||||| | ||||||||||||||||||| |||||||| | |||||||||||    
T  24045620 aattgttcttcgaagccaacatgcgtctgatcttgagttcatcgataatccaaaagccaaggaattcatcaaatcacctccctatatacaggggacacac 24045521  T
Q  282 ttctctca 289  Q
    ||||||||    
T  24045520 ttctctca 24045513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 577
Target Start/End: Complemental strand, 23668603 - 23668437
Alignment:
Q  418 ataacaagatgattagagaaatg---tggaatgagatgcttcattaccatatatcctgaagctgcttttgtcaatgcatagatgtttctacttcacata- 513  Q
    |||||||||| ||||| ||||||   ||||||||||||||||||||||||    | |||||||||||||||||||||||||||||||||||||||||||     
T  23668603 ataacaagataattagggaaatgatgtggaatgagatgcttcattaccat----catgaagctgcttttgtcaatgcatagatgtttctacttcacatag 23668508  T
Q  514 -tagt-ttgtctctag-----gagaaactgttacctgaagtaatattatttgtcttgctacaaagaagtga 577  Q
     | || ||||||||||      |||||||| | |||||||||||||||||||||||| |||||||||||||    
T  23668507 tttgtcttgtctctagtactaaagaaactgctgcctgaagtaatattatttgtcttgatacaaagaagtga 23668437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 577
Target Start/End: Complemental strand, 24040879 - 24040713
Alignment:
Q  418 ataacaagatgattagagaaatg---tggaatgagatgcttcattaccatatatcctgaagctgcttttgtcaatgcatagatgtttctacttcacata- 513  Q
    |||||||||| ||||| ||||||   ||||||||||||||||||||||||    | |||||||||||||||||||||||||||||||||||||||||||     
T  24040879 ataacaagataattagggaaatgatgtggaatgagatgcttcattaccat----catgaagctgcttttgtcaatgcatagatgtttctacttcacatag 24040784  T
Q  514 -tagt-ttgtctctag-----gagaaactgttacctgaagtaatattatttgtcttgctacaaagaagtga 577  Q
     | || ||||||||||      |||||||| | |||||||||||||||||||||||| |||||||||||||    
T  24040783 tttgtcttgtctctagtactaaagaaactgctgcctgaagtaatattatttgtcttgatacaaagaagtga 24040713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 23673226 - 23673164
Alignment:
Q  288 caagcagatccattagccataga-tttgttac-aaaaagtgcttgtgttcgatccaaataaaa 348  Q
    ||||||||||||||||||||||| ||| |||| ||||| |||||||||| ||||||| |||||    
T  23673226 caagcagatccattagccatagatttttttacaaaaaaatgcttgtgtttgatccaactaaaa 23673164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 24045502 - 24045440
Alignment:
Q  288 caagcagatccattagccataga-tttgttac-aaaaagtgcttgtgttcgatccaaataaaa 348  Q
    ||||||||||||||||||||||| ||| |||| ||||| |||||||||| ||||||| |||||    
T  24045502 caagcagatccattagccatagatttttttacaaaaaaatgcttgtgtttgatccaactaaaa 24045440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 35681425 - 35681490
Alignment:
Q  85 ccatcgatatgtggtccgtaggatgcatttttgctgagatgtttggtagaaagccaatcttccctg 150  Q
    |||||||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  35681425 ccatcgatgtgtggtccgtaggatgcattcttgctgagattcttggtagaaagccaatcttccctg 35681490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 288 - 407
Target Start/End: Original strand, 35681643 - 35681756
Alignment:
Q  288 caagcagatccattagccatagatttgttacaaaaagtgcttgtgttcgatccaaataaaaagaattatattactgcatcagaagtacttcaacatccat 387  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||  |  | ||||     |||||||  ||||||| ||||||||||||||    
T  35681643 caagcggatccattagccatagacttgttacaaaaaatgcttgtgttcgatcc-gacgagaaga-----attactgtctcagaagcacttcaacatccat 35681736  T
Q  388 atatggctgatctatgtgat 407  Q
    ||||||||||||||| ||||    
T  35681737 atatggctgatctatatgat 35681756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 35686808 - 35686862
Alignment:
Q  288 caagcagatccattagccatagatttgttacaaaaagtgcttgtgttcgatccaa 342  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35686808 caagctgatccattagccatagatttgttacaaaaaatgcttgtgttcgatccaa 35686862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 35686588 - 35686655
Alignment:
Q  85 ccatcgatatgtggtccgtaggat--gcatttttgctgagatgtttggtagaaagccaatcttccctg 150  Q
    |||||||| | |||||||||||||  |||||||  |||||||  |||||||||| |||||||||||||    
T  35686588 ccatcgatgtatggtccgtaggatatgcattttgactgagattcttggtagaaaaccaatcttccctg 35686655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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