View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0029-Insertion-1 (Length: 1124)
Name: NF0029-Insertion-1
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0029-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 788 - 1036
Target Start/End: Original strand, 24366154 - 24366407
Alignment:
| Q |
788 |
attcagaagacttttttataagcaatatcagctattaagaagttattagacactcacagatgttgaatgtgatgaggaggctggggtgtgggcataaagg |
887 |
Q |
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| T |
24366154 |
attcagaagacttttttataagcaatatcagctattaagaaggtattagacactcacagatgttgaatgtga---ggaggctggggtgtgggcataaagg |
24366250 |
T |
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| Q |
888 |
gttggaggcatacgaatgtaaggtcgaacccgctccatgctaacatactaacctaaccaacaattatgactttcacaattcaaaaagt-aaaaata---- |
982 |
Q |
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| T |
24366251 |
gttggaggcatacgaatgtaaggtcgaacccgatccatgctaacatactaacccaaccaacaattatgactttcaccattcaaaaagtaaaaaataaaaa |
24366350 |
T |
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| Q |
983 |
-attaatag-acttagatacgagggtatgagccc-atgagtgataaacaagacacgg |
1036 |
Q |
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| T |
24366351 |
taaaaatagaacttagatacgagggtatgaacccaatgagtgataaacaagacacgg |
24366407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 24366110 - 24366156
Alignment:
| Q |
79 |
gaagagtggctaagttatttgtttatgatcagactagtttaaagatt |
125 |
Q |
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| T |
24366110 |
gaagagtggctaagttacttgtttatgatcagaccagtttaaagatt |
24366156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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