View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0029-Insertion-2 (Length: 700)
Name: NF0029-Insertion-2
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0029-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 558; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 13 - 657
Target Start/End: Complemental strand, 23071304 - 23070660
Alignment:
| Q |
13 |
gatgcaaaagaatcagactaatgataaaacatatcaaatactatctggaaagtaaaggatcactggaaaaatcataaaacactttgaaattttattcttg |
112 |
Q |
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|||| |||||||| |||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23071304 |
gatgaaaaagaatgagaccattgataaaacatctcaaatactatctggaaagtaaaggatcactggaaaaatcataaaacactttgaaattttattcttg |
23071205 |
T |
|
| Q |
113 |
ggccaattacaaataattattatttttgaagcttatgtcaaaccaacttaaaatagagaatttattttggtcttcacttattgtacatagtttaaaatta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
23071204 |
ggccaattacaaataattattatttttgaagcttatatcagaccaacttgaaatagagattttattttggtcttcacttattgtacatagtttaaactta |
23071105 |
T |
|
| Q |
213 |
tgagaaaagcttaactagtaaaaccaccatctgcagctataatctgtccagtgatatatgaagcagctggaagacaaagaaaagcaaccaaggctgatat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23071104 |
tgagaaaagcttaactagtaaaaccaccatctgcagctataatctgtccagtgatatatgaagcagctggaagacaaagaaaagcaaccaaggctgatat |
23071005 |
T |
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| Q |
313 |
gtctctaggttgtgccacacgattgataggtgtttgagacaatgcaacttccatgacctttggagcatcagggtgttcctataataatttgtcgaagaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23071004 |
gtctctaggttgtgccacacgattgataggtgtttgagacaatgcaacttccatgacctttggagcatcagggtgttcctataataatttgtagaagaat |
23070905 |
T |
|
| Q |
413 |
atatagaagtatattgttactgctaaaaagtaaaattgttactagtatgtatagagattaagaaaaaatatttttgtattcgattatactacttttttga |
512 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23070904 |
atatagaagtatattgttactgctaaaaaataaaattgttactagtatgtatagagattaagaaaaaatatttttgtattcgattatactgtttttttga |
23070805 |
T |
|
| Q |
513 |
aaatagaaccgacaaggaatc-aaataaataacttttacgcagataacgtaattattactttgaaaagtatttaacttgtatttttaagacaaaattttc |
611 |
Q |
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||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
23070804 |
aaatagaaccgacaaggaatcaaaataagtaacttttacacagataacgtaattattactttgaaaaatatttgacttgtatttttaagacaaaattttc |
23070705 |
T |
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| Q |
612 |
tttatgtattccttaaaaccatgttctcagagcgctttgttagcaa |
657 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23070704 |
tttatgtattcctt-aaaccatgttctcagagcgctttgttagcaa |
23070660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 23060314 - 23060222
Alignment:
| Q |
231 |
taaaaccaccatctgcagctataatctgtccagtgatatatgaagcagctggaagacaaagaaaagcaaccaaggctgatatgtctctaggtt |
323 |
Q |
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||||||| ||||||||||| |||||||||||||||| |||||||||||| || || ||||||||||||||||| ||||| |||||| |||||| |
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| T |
23060314 |
taaaacctccatctgcagcgataatctgtccagtgacatatgaagcagcagggaggcaaagaaaagcaaccaatgctgagatgtctttaggtt |
23060222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 23086789 - 23086696
Alignment:
| Q |
219 |
aagcttaactagtaaaaccaccatctgcagctataatctgtccagtgatatatgaagcagctggaagacaaagaaaagcaaccaaggctgatat |
312 |
Q |
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|||||||| | || ||||| ||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
23086789 |
aagcttaaattgtgaaacctccatctgcagctataatttgtccagtgatgtgtgatgcagctggaagacaaagaaaagcaaccaatcctgatat |
23086696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 23093100 - 23092996
Alignment:
| Q |
219 |
aagcttaactagtaaaaccaccatctgcagctataatctgtccagtgatatatgaagcagctggaagacaaagaaaagcaaccaaggctgatatgtctct |
318 |
Q |
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|||||||| |||| || || |||||||| |||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||| ||| | |
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| T |
23093100 |
aagcttaaatagtgaagcctccatctgctgctataatttgtccagtgatgtgtgatgcagctggaagacaaagaaaagcaaccaatcctgatatatcttt |
23093001 |
T |
|
| Q |
319 |
aggtt |
323 |
Q |
| |
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||||| |
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| T |
23093000 |
aggtt |
23092996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 23027548 - 23027483
Alignment:
| Q |
247 |
agctataatctgtccagtgatatatgaagcagctggaagacaaagaaaagcaaccaaggctgatat |
312 |
Q |
| |
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||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
23027548 |
agctataatttgtccagtgatgtgtgatgcagctggaagacaaagaaaagcaaccaatgctgatat |
23027483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 23039710 - 23039604
Alignment:
| Q |
247 |
agctataatctgtccagtgatatatgaagcagctggaagacaaagaaaagcaaccaaggctgatatgtctctaggttgtgccacacgattgataggtgtt |
346 |
Q |
| |
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|||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| | | |||||| ||| |||| | | ||| |||| ||||||||| |
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| T |
23039710 |
agctataacttgtccagtgatgtatgatgcagctggaagacaaagaaaggcaactagtgatgatatctctttaggctctcccatacgacccataggtgtt |
23039611 |
T |
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| Q |
347 |
tgagaca |
353 |
Q |
| |
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||||||| |
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| T |
23039610 |
tgagaca |
23039604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 564 - 614
Target Start/End: Complemental strand, 40220430 - 40220380
Alignment:
| Q |
564 |
ttattactttgaaaagtatttaacttgtatttttaagacaaaattttcttt |
614 |
Q |
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|||| ||||||| |||||||| ||||||||||| |||||||||||| |||| |
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| T |
40220430 |
ttatgactttgacaagtatttgacttgtattttcaagacaaaatttccttt |
40220380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 15928784 - 15928861
Alignment:
| Q |
8 |
caaaggatgcaaaagaatcagactaatgataaaacatatcaaatacta-tctggaaagtaaaggatcactggaaaaat |
84 |
Q |
| |
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||||||||||| |||||||| |||| ||||||||||| ||||| |||| || ||||| ||||||||| |||| |||| |
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| T |
15928784 |
caaaggatgcagaagaatcaaactattgataaaacatctcaaagactactccagaaagaaaaggatcattggataaat |
15928861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 601
Target Start/End: Complemental strand, 6278688 - 6278647
Alignment:
| Q |
560 |
gtaattattactttgaaaagtatttaacttgtatttttaaga |
601 |
Q |
| |
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|||||||| | ||||||||||||||||||| ||||||||||| |
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| T |
6278688 |
gtaattatgattttgaaaagtatttaacttatatttttaaga |
6278647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 30698871 - 30698919
Alignment:
| Q |
257 |
tgtccagtgatatatgaagcagctggaagacaaagaaaagcaaccaagg |
305 |
Q |
| |
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||||||||||| || ||||||||||| |||||||| ||||| ||||||| |
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| T |
30698871 |
tgtccagtgatgtaagaagcagctggcagacaaaggaaagccaccaagg |
30698919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 1802940 - 1802863
Alignment:
| Q |
8 |
caaaggatgcaaaagaatcagactaatgataaaacatatcaaatacta-tctggaaagtaaaggatcactggaaaaat |
84 |
Q |
| |
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||||||||||| |||||||| |||| ||||||||||| ||||| |||| || ||||| ||||||||| |||| |||| |
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| T |
1802940 |
caaaggatgcagaagaatcaaactattgataaaacatctcaaagactactccagaaagaaaaggatcattggataaat |
1802863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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