View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0029-Insertion-3 (Length: 619)

Name: NF0029-Insertion-3
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0029-Insertion-3
NF0029-Insertion-3
[»] chr8 (16 HSPs)
chr8 (117-502)||(27883943-27884343)
chr8 (117-502)||(27885223-27885623)
chr8 (117-502)||(28024122-28024522)
chr8 (117-406)||(27967236-27967536)
chr8 (117-436)||(27979284-27979599)
chr8 (117-436)||(28036553-28036868)
chr8 (117-436)||(27871793-27872106)
chr8 (114-261)||(27857913-27858066)
chr8 (386-524)||(27967087-27967225)
chr8 (428-516)||(27979093-27979183)
chr8 (428-516)||(28036362-28036452)
chr8 (118-197)||(27848149-27848228)
chr8 (428-516)||(27871604-27871694)
chr8 (408-474)||(2509990-2510056)
chr8 (408-449)||(12190051-12190092)
chr8 (408-449)||(12434479-12434520)
[»] chr3 (2 HSPs)
chr3 (412-466)||(42925076-42925130)
chr3 (407-448)||(51265650-51265691)
[»] chr1 (3 HSPs)
chr1 (402-466)||(48673672-48673736)
chr1 (408-448)||(2378129-2378170)
chr1 (409-449)||(47600421-47600461)
[»] chr6 (4 HSPs)
chr6 (408-466)||(7533455-7533514)
chr6 (423-453)||(31314569-31314599)
chr6 (403-449)||(31314514-31314562)
chr6 (408-448)||(7202271-7202311)
[»] chr7 (1 HSPs)
chr7 (407-448)||(1532489-1532530)
[»] chr4 (1 HSPs)
chr4 (267-311)||(42005286-42005330)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 117 - 502
Target Start/End: Complemental strand, 27884343 - 27883943
Alignment:
Q  117 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaactttcgaagttgccat-------tttgtttgattctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||  ||||    
T  27884343 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccatatgaaattttgtttgtatctt 27884244  T
Q  210 -acacaactgagttgtggtttcaagattcatgaga-cgggtatttataggaatggaataacaatttgaagaattttaaatcttagaaatgtaaattattt 307  Q
     ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  27884243 tacacaactgagatgtggtttcaatattcatgagaacgggtatttataggaatggaacaacaatttgaagaattttgaatcttagaaatgtaaattattt 27884144  T
Q  308 gacg-ttaacgttaacttaaataacttgaa-gatctaagccgt--nnnnnnnnccttaaagaattactttactacaattaaattacataaagaaggaagt 403  Q
    |||| ||| ||||||||||||||||||||| ||||||||| ||           ||||||| ||||||| ||||||||| ||| |||||| |||||||||    
T  27884143 gacgtttaccgttaacttaaataacttgaaggatctaagcggtgaaaaagaaaacttaaaggattacttcactacaatttaataacataatgaaggaagt 27884044  T
Q  404 actga-aaaaacttaaaatcaatttgttataattaaataacttaaaa--acatctaatgtaatttatcctttaaaacaaccctttaaatttttcgcgtgc 500  Q
    ||| | |||||||| ||||||||||||| ||||||||||||||||||  | ||||||||||||||| ||||||||| || |||||||| |||||||||||    
T  27884043 actaagaaaaacttcaaatcaatttgttttaattaaataacttaaaaggatatctaatgtaatttaacctttaaaataa-cctttaaaattttcgcgtgc 27883945  T
Q  501 at 502  Q
    ||    
T  27883944 at 27883943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 117 - 502
Target Start/End: Complemental strand, 27885623 - 27885223
Alignment:
Q  117 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaactttcgaagttgccat-------tttgtttgattctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||  ||||    
T  27885623 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccatatgaaattttgtttgtatctt 27885524  T
Q  210 -acacaactgagttgtggtttcaagattcatgaga-cgggtatttataggaatggaataacaatttgaagaattttaaatcttagaaatgtaaattattt 307  Q
     ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  27885523 tacacaactgagatgtggtttcaatattcatgagaacgggtatttataggaatggaacaacaatttgaagaattttgaatcttagaaatgtaaattattt 27885424  T
Q  308 gacg-ttaacgttaacttaaataacttgaa-gatctaagccgt--nnnnnnnnccttaaagaattactttactacaattaaattacataaagaaggaagt 403  Q
    |||| ||| ||||||||||||||||||||| ||||||||| ||           ||||||| ||||||| ||||||||| ||| |||||| |||||||||    
T  27885423 gacgtttaccgttaacttaaataacttgaaggatctaagcggtgaaaaagaaaacttaaaggattacttcactacaatttaataacataatgaaggaagt 27885324  T
Q  404 actga-aaaaacttaaaatcaatttgttataattaaataacttaaaa--acatctaatgtaatttatcctttaaaacaaccctttaaatttttcgcgtgc 500  Q
    ||| | |||||||| ||||||||||||| ||||||||||||||||||  | ||||||||||||||| ||||||||| || |||||||| |||||||||||    
T  27885323 actaagaaaaacttcaaatcaatttgttttaattaaataacttaaaaggatatctaatgtaatttaacctttaaaataa-cctttaaaattttcgcgtgc 27885225  T
Q  501 at 502  Q
    ||    
T  27885224 at 27885223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 117 - 502
Target Start/End: Complemental strand, 28024522 - 28024122
Alignment:
Q  117 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaactttcgaagttgccat-------tttgtttgattctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||  ||||    
T  28024522 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccatatgaaattttgtttgtatctt 28024423  T
Q  210 -acacaactgagttgtggtttcaagattcatgaga-cgggtatttataggaatggaataacaatttgaagaattttaaatcttagaaatgtaaattattt 307  Q
     ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  28024422 tacacaactgagatgtggtttcaatattcatgagaacgggtatttataggaatggaacaacaatttgaagaattttgaatcttagaaatgtaaattattt 28024323  T
Q  308 gacg-ttaacgttaacttaaataacttgaa-gatctaagccgt--nnnnnnnnccttaaagaattactttactacaattaaattacataaagaaggaagt 403  Q
    |||| ||| ||||||||||||||||||||| ||||||||| ||           ||||||| ||||||| ||||||||| ||| |||||| |||||||||    
T  28024322 gacgtttaccgttaacttaaataacttgaaggatctaagcggtgaaaaagaaaacttaaaggattacttcactacaatttaataacataatgaaggaagt 28024223  T
Q  404 actga-aaaaacttaaaatcaatttgttataattaaataacttaaaa--acatctaatgtaatttatcctttaaaacaaccctttaaatttttcgcgtgc 500  Q
    ||| | |||||||| ||||||||||||| ||||||||||||||||||  | ||||||||||||||| ||||||||| || |||||||| |||||||||||    
T  28024222 actaagaaaaacttcaaatcaatttgttttaattaaataacttaaaaggatatctaatgtaatttaacctttaaaataa-cctttaaaattttcgcgtgc 28024124  T
Q  501 at 502  Q
    ||    
T  28024123 at 28024122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 117 - 406
Target Start/End: Complemental strand, 27967536 - 27967236
Alignment:
Q  117 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaactttcgaagttgccat-------tttgtttgattctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||  ||||    
T  27967536 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccatatgaaattttgtttgtatctt 27967437  T
Q  210 acacaactgagttgtggtttcaagattcatgaga-cgggtatttataggaatggaataacaatttgaagaattttaaatcttagaaatgtaaattatttg 308  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  27967436 acacaactgagatgtggtttcaatattcatgagaacgggtatttataggaatggaacaacaatttgaagaattttgaatcttagaaatgtaaattatttg 27967337  T
Q  309 acg-ttaacgttaacttaaataacttgaagatctaagccgt--nnnnnnnnccttaaagaattactttactacaattaaattacataaagaaggaagtac 405  Q
    ||| ||| |||||||||||||||||||||| ||||||| ||           ||||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  27967336 acgtttaccgttaacttaaataacttgaaggtctaagcggtgaaaaagaaaacttaaaggattactttactacaatttaataacataaagaaggaagtac 27967237  T
Q  406 t 406  Q
    |    
T  27967236 t 27967236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 117 - 436
Target Start/End: Complemental strand, 27979599 - 27979284
Alignment:
Q  117 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaactttcgaagttgccat-------tttgtttgattctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||  ||||    
T  27979599 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccatatgaaattttgtttgtatctt 27979500  T
Q  210 acacaactgagttgtggtttcaagattcatgaga-cgggtatttataggaatggaataacaatttgaagaattttaaatcttagaaatgtaaattatttg 308  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||       
T  27979499 acacaactgagatgtggtttcaatattcatgagaacgggtatttataggaatggaacaacaatttgaagaattttgaatcttagaaatgtaaattat--- 27979403  T
Q  309 acgttaacgttaacttaaataacttgaa-gatctaagccgtnnnnnnnnccttaaagaattactttactacaattaaattacataaagaaggaagtactg 407  Q
             ||||||| ||||||||||| | ||||||  ||         |||||| |||||||||| ||||||||||| | ||||||||| |||||||     
T  27979402 ---------ttaacttgaataacttgaaggctctaagtggtaaaaaaaaacttaaa-aattactttattacaattaaataatataaagaagaaagtacta 27979313  T
Q  408 aaaaaacttaaaatcaatttgttataatt 436  Q
    |||||||||||||||||||||||||||||    
T  27979312 aaaaaacttaaaatcaatttgttataatt 27979284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 117 - 436
Target Start/End: Complemental strand, 28036868 - 28036553
Alignment:
Q  117 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaactttcgaagttgccat-------tttgtttgattctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||  ||||    
T  28036868 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccatatgaaattttgtttgtatctt 28036769  T
Q  210 acacaactgagttgtggtttcaagattcatgaga-cgggtatttataggaatggaataacaatttgaagaattttaaatcttagaaatgtaaattatttg 308  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||       
T  28036768 acacaactgagatgtggtttcaatattcatgagaacgggtatttataggaatggaacaacaatttgaagaattttgaatcttagaaatgtaaattat--- 28036672  T
Q  309 acgttaacgttaacttaaataacttgaa-gatctaagccgtnnnnnnnnccttaaagaattactttactacaattaaattacataaagaaggaagtactg 407  Q
             ||||||| ||||||||||| | ||||||  ||         |||||| |||||||||| ||||||||||| | ||||||||| |||||||     
T  28036671 ---------ttaacttgaataacttgaaggctctaagtggtaaaaaaaaacttaaa-aattactttattacaattaaataatataaagaagaaagtacta 28036582  T
Q  408 aaaaaacttaaaatcaatttgttataatt 436  Q
    |||||||||||||||||||||||||||||    
T  28036581 aaaaaacttaaaatcaatttgttataatt 28036553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 117 - 436
Target Start/End: Complemental strand, 27872106 - 27871793
Alignment:
Q  117 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaactttcgaagttgccat-------tttgtttgattctt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||| ||||    
T  27872106 agagttttctagtagcagaacacatgcttaaacccaacagcacaaagatagcaatgcttagaactttcgaagttgccatatgaaattttgtttgaatctt 27872007  T
Q  210 acacaactgagttgtggtttcaagattcatgagacgggtatttataggaatggaataacaatttgaagaattttaaatcttagaaatgtaaattatttga 309  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||        
T  27872006 acacaactgagccgtggtttcaagattcatgagacaagtatttataggaatgaaataacaatttgaagaattttaaatctta-aaatgtaaattat---- 27871912  T
Q  310 cgttaacgttaacttaaataacttgaa-gatctaagccgtnnnnnnnnccttaaagaattactttactacaattaaattacataaagaaggaagtactga 408  Q
            ||||||| ||||| ||||| | ||||||| ||         ||||||| ||||||||| ||||||||||| | ||||||||| ||||||| |    
T  27871911 --------ttaacttgaataatttgaaggctctaagcggtaaaaaaaaacttaaag-attactttattacaattaaataatataaagaagaaagtactaa 27871821  T
Q  409 aaaaacttaaaatcaatttgttataatt 436  Q
    ||||||||||||||||||||| ||||||    
T  27871820 aaaaacttaaaatcaatttgtcataatt 27871793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 27858066 - 27857913
Alignment:
Q  114 catagagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaactttcgaagttgccat------tttgtttgattc 207  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||      ||||||||||||    
T  27858066 catagagttttctagtagcagaacacatgcttaaacccaacaacacaaagagagaaatgcttagaactttcgaagttgccatataaaatttgtttgattc 27857967  T
Q  208 ttacacaactgagttgtggtttcaagattcatgagacgggtatttataggaatg 261  Q
    |||||| |||||  |||||||||||||||||||||| |||||||||||||||||    
T  27857966 ttacactactgaactgtggtttcaagattcatgagaagggtatttataggaatg 27857913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 386 - 524
Target Start/End: Complemental strand, 27967225 - 27967087
Alignment:
Q  386 ttacataaagaaggaagtactga-aaaaacttaaaatcaatttgttataattaaataacttaaaa-acatctaatgtaatttatcctttaaaacaaccct 483  Q
    |||| ||||||||||||||||   |||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||| ||||||    
T  27967225 ttacctaaagaaggaagtactatgaaaaacttcaaatcaatttgttttaattaaataacttaaaagatatctaatgtaatttaacctttaaaataaccct 27967126  T
Q  484 ttaaatttttcgcgtgcattgattatttatttatttactaa 524  Q
    ||||| |||||||||||||  |||| |||||| ||||||||    
T  27967125 ttaaaattttcgcgtgcat--attaattatttctttactaa 27967087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 428 - 516
Target Start/End: Complemental strand, 27979183 - 27979093
Alignment:
Q  428 gttataattaaataacttaaaa--acatctaatgtaatttatcctttaaaacaaccctttaaatttttcgcgtgcattgattatttattta 516  Q
    ||||||||||||||||||||||  ||||||||| | ||||| ||||||||| ||||||||||| |||||| ||||||| ||||||| ||||    
T  27979183 gttataattaaataacttaaaaggacatctaatcttatttaacctttaaaataaccctttaaaattttcgtgtgcattaattatttcttta 27979093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 428 - 516
Target Start/End: Complemental strand, 28036452 - 28036362
Alignment:
Q  428 gttataattaaataacttaaaa--acatctaatgtaatttatcctttaaaacaaccctttaaatttttcgcgtgcattgattatttattta 516  Q
    ||||||||||||||||||||||  ||||||||| | ||||| ||||||||| ||||||||||| |||||| ||||||| ||||||| ||||    
T  28036452 gttataattaaataacttaaaaggacatctaatcttatttaacctttaaaataaccctttaaaattttcgtgtgcattaattatttcttta 28036362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 27848228 - 27848149
Alignment:
Q  118 gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaactttcgaagttgccattt 197  Q
    ||||||||| | ||||||||  |||||||| ||||||| |||||||||| | || || ||||||||||||||||||||||    
T  27848228 gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactaagaactttcgaagttgccattt 27848149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 516
Target Start/End: Complemental strand, 27871694 - 27871604
Alignment:
Q  428 gttataattaaataacttaaaa--acatctaatgtaatttatcctttaaaacaaccctttaaatttttcgcgtgcattgattatttattta 516  Q
    |||||||||||||||||| |||  |||| |||| ||||||| ||||||||| ||||||||||| |||  | ||||||| ||||||| ||||    
T  27871694 gttataattaaataactttaaaggacatttaatctaatttaacctttaaaataaccctttaaaatttatgtgtgcattaattatttcttta 27871604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 2510056 - 2509990
Alignment:
Q  408 aaaaaacttaaaatcaatttgttataattaaataacttaaaaacatctaatgtaatttatcctttaa 474  Q
    ||||||| ||||| |||||| ||| ||||||||||||||||||| ||  | |||||||| |||||||    
T  2510056 aaaaaacataaaaccaatttattacaattaaataacttaaaaacctccgaagtaatttaacctttaa 2509990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 12190051 - 12190092
Alignment:
Q  408 aaaaaacttaaaatcaatttgttataattaaataacttaaaa 449  Q
    |||||||||||||  ||||||||| |||||||||||||||||    
T  12190051 aaaaaacttaaaacaaatttgttacaattaaataacttaaaa 12190092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 12434479 - 12434520
Alignment:
Q  408 aaaaaacttaaaatcaatttgttataattaaataacttaaaa 449  Q
    |||||||||||||  ||||||||| |||||||||||||||||    
T  12434479 aaaaaacttaaaacaaatttgttacaattaaataacttaaaa 12434520  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 466
Target Start/End: Complemental strand, 42925130 - 42925076
Alignment:
Q  412 aacttaaaatcaatttgttataattaaataacttaaaaacatctaatgtaattta 466  Q
    |||||||||||||||||||| |||||||||||||||| || |||  |||||||||    
T  42925130 aacttaaaatcaatttgttacaattaaataacttaaagacctctgctgtaattta 42925076  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 51265691 - 51265650
Alignment:
Q  407 gaaaaaacttaaaatcaatttgttataattaaataacttaaa 448  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  51265691 gaaaaaacttaaaaccaacttgttgtaattaaataacttaaa 51265650  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 466
Target Start/End: Original strand, 48673672 - 48673736
Alignment:
Q  402 gtactgaaaaaacttaaaatcaatttgttataattaaataacttaaaaacatctaatgtaattta 466  Q
    ||||| ||||||||||||| ||| |||||| |||||| ||||||||| || ||| ||||||||||    
T  48673672 gtactaaaaaaacttaaaaccaacttgttaaaattaactaacttaaagacctctgatgtaattta 48673736  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 448
Target Start/End: Complemental strand, 2378170 - 2378129
Alignment:
Q  408 aaaaaacttaaa-atcaatttgttataattaaataacttaaa 448  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  2378170 aaaaaacttaaagaccaatttgttataattaaataacttaaa 2378129  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 449
Target Start/End: Complemental strand, 47600461 - 47600421
Alignment:
Q  409 aaaaacttaaaatcaatttgttataattaaataacttaaaa 449  Q
    ||||||||||||  ||||||||| |||||||||||||||||    
T  47600461 aaaaacttaaaactaatttgttacaattaaataacttaaaa 47600421  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 466
Target Start/End: Complemental strand, 7533514 - 7533455
Alignment:
Q  408 aaaaaacttaaa-atcaatttgttataattaaataacttaaaaacatctaatgtaattta 466  Q
    |||||||||||| | ||| ||||||||||||||||||||||| || ||| ||||||||||    
T  7533514 aaaaaacttaaagaacaacttgttataattaaataacttaaagacctctgatgtaattta 7533455  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 453
Target Start/End: Complemental strand, 31314599 - 31314569
Alignment:
Q  423 aatttgttataattaaataacttaaaaacat 453  Q
    |||||||||||||||||||||||||||||||    
T  31314599 aatttgttataattaaataacttaaaaacat 31314569  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 449
Target Start/End: Complemental strand, 31314562 - 31314514
Alignment:
Q  403 tactgaaaaaacttaaa--atcaatttgttataattaaataacttaaaa 449  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  31314562 tactgaaaaaacttaaatgatcaacttgttataattaaataactcaaaa 31314514  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 448
Target Start/End: Complemental strand, 7202311 - 7202271
Alignment:
Q  408 aaaaaacttaaaatcaatttgttataattaaataacttaaa 448  Q
    ||||||||||||| |||||| ||||| ||||||||||||||    
T  7202311 aaaaaacttaaaaccaatttattatatttaaataacttaaa 7202271  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 1532489 - 1532530
Alignment:
Q  407 gaaaaaacttaaaatcaatttgttataattaaataacttaaa 448  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  1532489 gaaaaaacttaaaaccaacttgttgtaattaaataacttaaa 1532530  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 42005286 - 42005330
Alignment:
Q  267 acaatttgaagaattttaaatcttagaaatgtaaattatttgacg 311  Q
    ||||||||||| |||| | |||||| |||||||||||||||||||    
T  42005286 acaatttgaaggatttcacatcttaaaaatgtaaattatttgacg 42005330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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