View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0029-Insertion-4 (Length: 615)
Name: NF0029-Insertion-4
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0029-Insertion-4 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 8 - 615
Target Start/End: Original strand, 54862015 - 54862623
Alignment:
| Q |
8 |
agttttcctataaatttttctgctaaataaaaggaagaatcgatttattgatgtttatattttgtttggtattgtaggtggatactaaacgccgtcaaag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54862015 |
agttttcctataaatttttctgctaaataaaaggaagaatcgatttattgatgtttatattttgtttggtattgtaggtggatactaaacgccgtcaaag |
54862114 |
T |
|
| Q |
108 |
atgaaagtgatggtgtattagatatataatggatgggaccctagtttttcaaatccttggtaggagcagaataaactcttgacaatggtctgaaagtttg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54862115 |
atgaaagtgatggtgtattagatatataatggacgggactctggtttttcaaatccttggtaggagcagaataaactct-gacaatggtctgaaagtttg |
54862213 |
T |
|
| Q |
208 |
tcaatggttggagtaatcatcactgtttccctaggtagtgaaggatgtgtttctttttgttatctgcaatcattttgtgatgtagattctccatatatcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
54862214 |
tcaatggttggagtaatcatcactgtttccctaggtagtggaggatgtgtttctttttgttatctgtaattattttgtgatgtagattctccatatatcc |
54862313 |
T |
|
| Q |
308 |
tcatcgggtccttgttcatactcagacttttgtcaagtagcttgacttgtttacaactacaaccagtatacacattaagactttctattctccggtgaca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54862314 |
tcatcgggtccttgttcatactcagacttttgtcaagtagcttgacttgtttacaactacaaccagtatacacattaagactttctattctccggtgaca |
54862413 |
T |
|
| Q |
408 |
aaattgttgttagtc--annnnnnnnnnnngggttaacatgatattattatgaaattttaccaccgtttaacggtgattaatctccgtctgggaacttgt |
505 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54862414 |
aaattgttgttagtcgttttttttttttttgggttaacatgatattagtatgaaattttaccaccgtttaacggtgattaatctccgtctgggaacttgt |
54862513 |
T |
|
| Q |
506 |
gggacacacaaggtgggttcttgtttctcaactgaattttttccatatgtccacaaatcccttaccacttgaatcaatctattattagttgttgttagtc |
605 |
Q |
| |
|
||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54862514 |
ggggcacacaagatgggttcttgcttctcaactgaattttttccatatgtccacaaatcccttaccacttgaatcaatctattattagttgttgttagtc |
54862613 |
T |
|
| Q |
606 |
gtatttctat |
615 |
Q |
| |
|
|||||||||| |
|
|
| T |
54862614 |
gtatttctat |
54862623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 200 - 360
Target Start/End: Original strand, 54857374 - 54857537
Alignment:
| Q |
200 |
aaagtttgtcaatggttggagtaatcatcactgtttccctaggtagtgaaggatgtgtttctttttgttatctgcaatcatttt---gtgatgtagattc |
296 |
Q |
| |
|
|||||||||| |||||| ||||| |||| | |||||||| || |||| |||||||||||||||| |||| || ||| ||| | ||||||||| ||| |
|
|
| T |
54857374 |
aaagtttgtcgatggtttgagtatccatcccagtttcccttggaagtggaggatgtgtttctttta-ttatatgtaattattattatgtgatgtagtttc |
54857472 |
T |
|
| Q |
297 |
tccatata-tcctcatcgggtccttgttcatactcagacttttgtcaagtagcttgacttgttta |
360 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
54857473 |
tccatctaatccccatcgggtccttgttcatactcagacttttgtgaattagcttgacttattta |
54857537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 54857160 - 54857199
Alignment:
| Q |
62 |
ttatattttgtttggtattgtaggtggatactaaacgccg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54857160 |
ttatattttgtttggtattgtaggtggatactaaacgccg |
54857199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 22310581 - 22310629
Alignment:
| Q |
479 |
gtgattaatctccgtctgggaacttgtgggacacacaaggtgggttctt |
527 |
Q |
| |
|
|||| ||||||||||| | ||| ||||||||||| |||||||||||||| |
|
|
| T |
22310581 |
gtgactaatctccgtcagagaatttgtgggacacgcaaggtgggttctt |
22310629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 610 times since January 2019
Visitors: 1099