View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0029-Insertion-5 (Length: 462)
Name: NF0029-Insertion-5
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0029-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 6 - 462
Target Start/End: Original strand, 35706459 - 35706915
Alignment:
| Q |
6 |
cagaatcaatataatagggttcctttgattccccatctccatgtaggatcacttgatcttacctaattatacttgatcatatatcagtataacatttgct |
105 |
Q |
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| T |
35706459 |
cagaatcaatataatagggttcctttgattccccatctccatgtaggatcacttgatcttacctaattatacttgatcatatatcagtataacatttgct |
35706558 |
T |
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| Q |
106 |
tttctatgagaannnnnnnngtcttgcagttacccttacttgccaattaattactacatgaggaagtctatataccaaagaacctcaaaactagctctta |
205 |
Q |
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| T |
35706559 |
tttctatgagaattgtttttgtcttgcagttacccttacttgccaattaattactacataaggaattctatataccaaagaacctcaaaactagctctta |
35706658 |
T |
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| Q |
206 |
taacatataaatacattattgagcttctgattggttatacctctaaatatcaatgctcacacaagaattgctccaactttccttctccatctctaactcc |
305 |
Q |
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| T |
35706659 |
taatatataaatacattattgagcttctgattggttatacctctaaatatcaatgctcacacaagaattgctccaactttccttctccatctctaactcc |
35706758 |
T |
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| Q |
306 |
ctgatgtgataaatcagctttgttaagtaaattggtgtgcagttgatttaaaatttaaatacccttcatcgatagtcaatatgtaagcagccacaaagca |
405 |
Q |
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| T |
35706759 |
ctgatgtgataaatcagctttgttaagtaaattggtgtgcagttgatttaaaatttaaatacccttcatcgatagtcaatatgtaggcagccacaaagca |
35706858 |
T |
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| Q |
406 |
attctttacatttgtcaataacagaaaatggtcacccccacttcaagttattcctcc |
462 |
Q |
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| T |
35706859 |
attctttacatttgtcaataacagaaaatggtcacccccacttcaagttattcctcc |
35706915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 38225904 - 38225974
Alignment:
| Q |
45 |
catgtaggatcacttgatcttacctaattatacttgatcatatatcagtataacatttgcttttctatgag |
115 |
Q |
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| T |
38225904 |
catgcaggatcatttgatcttgcgtaattatacttgatcatttatcagaataacatttgctttgctatgag |
38225974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 38232197 - 38232241
Alignment:
| Q |
45 |
catgtaggatcacttgatcttacctaattatacttgatcatatat |
89 |
Q |
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| T |
38232197 |
catgtaggatcccttgatcttacgtaattatacttgatcatatat |
38232241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 9828750 - 9828812
Alignment:
| Q |
45 |
catgtaggatcacttgatcttacctaattatacttgatcatatatcagtataacatttgcttt |
107 |
Q |
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| T |
9828750 |
catgtaggatcacttgatattacgtaattatacttgatcatatatcaatataaaaattgcttt |
9828812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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