View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0029_high_3 (Length: 321)
Name: NF0029_high_3
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0029_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 48181823 - 48181692
Alignment:
| Q |
10 |
tttatttttctatatcttcaaccatannnnnnn--ccttatatttatatcttcttatcacattcacatctattacattattattctccttttctctttac |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48181823 |
tttatttttctatatcttcaaccatatttttttttccttatatttatatcttcttatcacat------ctattacattattattctccttttctctttac |
48181730 |
T |
|
| Q |
108 |
ctcaagttgtatgcatccaataaggtgcatggtgcaca |
145 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
48181729 |
ctcaagttttatgcatccaataaggtgcatggtgcaca |
48181692 |
T |
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