View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0029_low_1 (Length: 735)

Name: NF0029_low_1
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0029_low_1
NF0029_low_1
[»] chr7 (1 HSPs)
chr7 (77-735)||(45308999-45309657)


Alignment Details
Target: chr7 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 77 - 735
Target Start/End: Complemental strand, 45309657 - 45308999
Alignment:
Q  77 tcatcatatacaccactcttaatgtagataatgtgccttccttgatggttatttgggtatgcattaatagcatcaacaatagtcttatattgaccactgc 176  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45309657 tcatcatatacaccactcttagtgtagataatgtaccttccttgatggttatttgggtatgcattaatagcatcaacaatagtcttatattgaccactgc 45309558  T
Q  177 catccttggcaaccgttactaaaacgtcgttgtcagtggctccaatcggacccatagccatcagcttacgatcatcaacggaaaaccaagttggataccc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45309557 catccttggcaaccgttactaaaacgtcgttgtcagtggctccaatcggacccatagccatcagcttacgatcatcaacggaaaaccaagttggataccc 45309458  T
Q  277 ttcattatccactaatgatttaacattcgttgaatgagagatctcggatacaacatcaagtgccaaaccagtgagctttccaacattgtccaagtagtta 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45309457 ttcattatccactaatgatttaacattcgttgaatgagagatctcggatacaacatcaagtgccaaaccagtgagctttccaacattgtccaagtagtta 45309358  T
Q  377 tctgtttgcaaatgtaacatggccttattattatcactttttgtatcagaaaagccatcaaggcaagattgttggtaggcaatgacagccccaaataaat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45309357 tctgtttgcaaatgtaacatggccttattattatcactttttgtatcagaaaagccatcaaggcaagattgttggtaggcaatgacagccccaaataaat 45309258  T
Q  477 tcttgagttctaccgaacgattgtgtatactgcgaatgctactactttcagtgatgataacttttgatgccttaatttcattgatggagaactgtaacat 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||||||    
T  45309257 tcttgagttctaccgaacgattgtgtatactgcgaatgctactactttcagtgatgataactttagatgccttaagttcattgatagcgaactgtaacat 45309158  T
Q  577 gtccttgcagtcctcgagtgccagcttgatacctaaattgttgctttcattattctccatagaactaagtttattactcatgtcattaaatgcgttttct 676  Q
    ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45309157 gtccttgcagtcctcaagggccatcttgatacctaaattgttgctttcattattctccatagaactaagtttattactcatgtcattaaatgcgttttct 45309058  T
Q  677 acgctttccatcaagttcttcaccacaacatcaatataatctattgggtttgaggtttt 735  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45309057 acgctttccatcaagttcttcaccacaacatcaatataatctattgggtttgaggtttt 45308999  T

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