View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0029_low_10 (Length: 312)
Name: NF0029_low_10
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0029_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 2480075 - 2479991
Alignment:
| Q |
137 |
caatttattgttgaagaaaggatacaaagtgttcatacctttctttagaaataccaatgtgagaacgtcaacctcattatgtgtt |
221 |
Q |
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| T |
2480075 |
caatttattgttgaagaaaggatacaaagtgttcatacctttctttagaaataccaatgtgagaacgtcaacctcattatgtgtt |
2479991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 2480177 - 2480138
Alignment:
| Q |
97 |
ccaaaaagtaaaattaacatgtaagtagcatgagataaca |
136 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |
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| T |
2480177 |
ccaaaaagtaaaattaacatgtaaatagcatgagataaca |
2480138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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