View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0029_low_12 (Length: 311)
Name: NF0029_low_12
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0029_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 52577459 - 52577188
Alignment:
| Q |
12 |
atgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttctcatttgaaattaannnnnnnagggagtactg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
52577459 |
atgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttctcatttgaaattaatttttttaaggagtactg |
52577360 |
T |
|
| Q |
112 |
tttgaagatgatttaaatgtaaacaattatcttacaaggttttatttttcgtatgtaaacaacttattctctacagactgtgactgatagttggttagag |
211 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52577359 |
tttgaagatgatttaaatgtaaacaattatcttactaggttttatttttggtatgtaaacaacttattctctacagactgtgacggatagttggttagag |
52577260 |
T |
|
| Q |
212 |
aatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatttaatttaattgccacaagt |
283 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52577259 |
aatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatgtaatttaattgccacaagt |
52577188 |
T |
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