View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0029_low_2 (Length: 521)
Name: NF0029_low_2
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0029_low_2 |
 | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 100 - 511
Target Start/End: Original strand, 8341661 - 8342072
Alignment:
| Q |
100 |
caaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8341661 |
caaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgcagattgctgcaaatggaaaggaattcaatgcaacaatcaa |
8341760 |
T |
|
| Q |
200 |
accggttatgttgaaaagcttgatctacacgattcatattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
8341761 |
accggttatgttgaaaagcttgatctacaccattcacattatttgagtggtgaaatcaatccttcaataactgagttgtaacatctaacatatcttgacc |
8341860 |
T |
|
| Q |
300 |
tcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
8341861 |
tcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaacggtggttatgagggaaagat |
8341960 |
T |
|
| Q |
400 |
tcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgtta |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8341961 |
tcctactcaacttgggaatctctcacaattgcaacaccttaatctcagtcttaatgatcttgttggtacaatccctttccaactcggaaatctttcgtta |
8342060 |
T |
|
| Q |
500 |
ttgcaatctctg |
511 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8342061 |
ttgcaatctctg |
8342072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 100 - 447
Target Start/End: Original strand, 26727260 - 26727604
Alignment:
| Q |
100 |
caaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaa |
199 |
Q |
| |
|
|||||||||| ||| |||||| |||||||| |||||| |||||||||| | || || ||| |||||||||||||||| ||| | ||||||||| || |
|
|
| T |
26727260 |
caaacaaggccttcaagatgagtatggcattttgtccacatggaaggatgatcaaaatgcagattgctgcaaatggatgggagtcttatgcaacaacgaa |
26727359 |
T |
|
| Q |
200 |
accggttatgttgaaaagcttgatctacacgattcatattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacc |
299 |
Q |
| |
|
|| ||||||||| ||| |||||| | || | || |||| | | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26727360 |
acaggttatgttcaaagacttgatttgcatggtttgtatt---taaattgtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacc |
26727456 |
T |
|
| Q |
300 |
tcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagat |
399 |
Q |
| |
|
| |||| |||| | ||| ||||| || ||||| |||||||| || |||| ||| |||||||||||| |||||||||||| || | | | |||||| |
|
|
| T |
26727457 |
ttagttcattgatgattagaggtcatatcccaaattttattggctccttcatcaatttacgataccttaatctctcaaatgccttttttaatgagaagat |
26727556 |
T |
|
| Q |
400 |
tcctactcaacttgggaatctctcacaattgcaacaccttaatctcag |
447 |
Q |
| |
|
|||| |||||||||| || |||||||| |||||||||||| ||||||| |
|
|
| T |
26727557 |
tccttctcaacttggaaaactctcacagttgcaacaccttgatctcag |
26727604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 389 - 495
Target Start/End: Original strand, 8333037 - 8333143
Alignment:
| Q |
389 |
gaggggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaa |
488 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
8333037 |
gagggaaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttaatgatcttgttggaaaaatccctttccaactcgaaa |
8333136 |
T |
|
| Q |
489 |
atctttc |
495 |
Q |
| |
|
||||||| |
|
|
| T |
8333137 |
atctttc |
8333143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 101 - 495
Target Start/End: Complemental strand, 30213 - 29813
Alignment:
| Q |
101 |
aaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaa |
200 |
Q |
| |
|
||||||||| ||| |||||| ||||| ||||||||| |||||||||| | ||||| ||| ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
30213 |
aaacaaggccttcaagatgactatggtatgttgtccacatggaaggaggatccaaatgcagattgctgcaaatggaagggagttcaatgcaacaatcaaa |
30114 |
T |
|
| Q |
201 |
ccggttatgttgaaaagcttgatctacacgattcata------ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatct |
294 |
Q |
| |
|
||||||||||||||||||||||||| || | ||| | || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30113 |
ccggttatgttgaaaagcttgatctgcatggttcggaaacacgttgtttgagtggtgaaatcaatccttcaataactgagttgcaacatctaaaatatct |
30014 |
T |
|
| Q |
295 |
agacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgagggg |
394 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||| ||| |
|
|
| T |
30013 |
tgacctcagatatttgaataccagtggtcaaatcccaaaatttattggatccatcagcaaattacaataccttgatctctcatttggtggttatgatggg |
29914 |
T |
|
| Q |
395 |
aagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatcttt |
494 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| ||| ||| |||| || |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
29913 |
aagattcctattcaacttgggaatctatcacaattgcgacatcttgatcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatcttt |
29814 |
T |
|
| Q |
495 |
c |
495 |
Q |
| |
|
| |
|
|
| T |
29813 |
c |
29813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 101 - 495
Target Start/End: Original strand, 168579 - 168979
Alignment:
| Q |
101 |
aaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaa |
200 |
Q |
| |
|
||||||||| ||| |||||| ||||| ||||||||| |||||||||| | ||||| ||| ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
168579 |
aaacaaggccttcaagatgactatggtatgttgtccacatggaaggaggatccaaatgcagattgctgcaaatggaagggagttcaatgcaacaatcaaa |
168678 |
T |
|
| Q |
201 |
ccggttatgttgaaaagcttgatctacacgattcata------ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatct |
294 |
Q |
| |
|
||||||||||||||||||||||||| || | ||| | || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
168679 |
ccggttatgttgaaaagcttgatctgcatggttcggaaacacgttgtttgagtggtgaaatcaatccttcaataactgagttgcaacatctaaaatatct |
168778 |
T |
|
| Q |
295 |
agacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgagggg |
394 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||| ||| |
|
|
| T |
168779 |
tgacctcagatatttgaataccagtggtcaaatcccaaaatttattggatccatcagcaaattacaataccttgatctctcatttggtggttatgatggg |
168878 |
T |
|
| Q |
395 |
aagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatcttt |
494 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| ||| ||| |||| || |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
168879 |
aagattcctattcaacttgggaatctatcacaattgcgacatcttgatcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatcttt |
168978 |
T |
|
| Q |
495 |
c |
495 |
Q |
| |
|
| |
|
|
| T |
168979 |
c |
168979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 100 - 510
Target Start/End: Original strand, 173587 - 174003
Alignment:
| Q |
100 |
caaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaa |
199 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| ||||||||| ||||| || || ||||||||||||||||| ||| |||||||||||| || |
|
|
| T |
173587 |
caaacaaggccttcaagatgattatggcatgttgtccacatggaagggcggtcaaaatgaagattgctgcaaatggaagggagttcaatgcaacatcgaa |
173686 |
T |
|
| Q |
200 |
accggttatgttgaaaagcttgatctacacgattcata------ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatc |
293 |
Q |
| |
|
|| ||||||||| ||| |||||||| || | || | | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
173687 |
actggttatgttcaaagtcttgatctgcatggctcggaaacacgtcatttgagtggtgaaatcaatccttcaataactgagttacaaaatctaacatatt |
173786 |
T |
|
| Q |
294 |
tagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggg |
393 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||| || |||||||| || || |||||||||| ||||||||| |||||| || |
|
|
| T |
173787 |
tagacctcagttatttgaatactagtagtcaaatctcaaaatttattggctccttcagcaagttgcggcaccttgatctgtcaaatggtcattatgatgg |
173886 |
T |
|
| Q |
394 |
gaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctt |
493 |
Q |
| |
|
|||| ||||| | ||||||| ||||| ||||||||| | ||||| |||| || | ||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
173887 |
gaaggttccttttgaacttggaaatctatcacaattgtgataccttgatcttagctacaatgaactcattggagaaatccctttccaactcggaaatctt |
173986 |
T |
|
| Q |
494 |
tcgttattgcaatctct |
510 |
Q |
| |
|
|| || ||||| ||||| |
|
|
| T |
173987 |
tcattgttgcagtctct |
174003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 100 - 447
Target Start/End: Complemental strand, 44786106 - 44785757
Alignment:
| Q |
100 |
caaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaa |
199 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| ||| ||| |||||||||| ||| ||||| ||||||||| ||||| ||||||||||||| ||| |
|
|
| T |
44786106 |
caaacaaggcattcaagatgattatggcatgttgtccacatcgaaagacggtccaaatgcagattgttgcaaatgggaaggagttcaatgcaacaaccaa |
44786007 |
T |
|
| Q |
200 |
accggttat--gttgaaaagcttgatc-tacacgattcatattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctag |
296 |
Q |
| |
|
|| || ||| ||| | || || || | || || || |||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
44786006 |
actggatatatgttcagaatctgcatggttca-gaaacacgttatttgagtggtgtaatcaatccttcaataactgagctgcgacatctaaaatatctag |
44785908 |
T |
|
| Q |
297 |
acctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaa |
396 |
Q |
| |
|
|||||||| |||||| ||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| | || || |
|
|
| T |
44785907 |
acctcagtcatttgattactaatgatcaaattccaaaatttattggatccttcagcaacttacgataccttgacctctcagttggtggttacggtggaaa |
44785808 |
T |
|
| Q |
397 |
gattcctactcaacttgggaatctctcacaattgcaacaccttaatctcag |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
44785807 |
gattcctactcaacttgggaatctctcacaattgcgacaccttgatctcag |
44785757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 231 - 510
Target Start/End: Original strand, 44144710 - 44144990
Alignment:
| Q |
231 |
attcatattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattcc |
330 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||| |||||||||| || |
|
|
| T |
44144710 |
attcatatgatttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtggtcaaatccc |
44144809 |
T |
|
| Q |
331 |
aaaatttattggatcgttcagcaacttacgatacc-ttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatctctcacaatt |
429 |
Q |
| |
|
|||||||||||| || |||||||| |||||| ||| ||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
44144810 |
aaaatttattggctccttcagcaagttacgacacctttgatctctcagttggtggttatgatgggaagattcctgctcaacttgggaatctctcacgatt |
44144909 |
T |
|
| Q |
430 |
gcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatctct |
510 |
Q |
| |
|
|| ||||||| || | || | ||||| || ||||| ||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
44144910 |
gcgacaccttgattttagctacaatgaactcattggagaaatccctttccaactcggaaatctttcattattgcagtctct |
44144990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 101 - 401
Target Start/End: Original strand, 44611480 - 44611786
Alignment:
| Q |
101 |
aaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaa |
200 |
Q |
| |
|
||||||| | ||| |||||| ||||| ||||||||| |||||||||| ||| || ||| ||||||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
44611480 |
aaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagattgctgcaaatggaagggagttcaatgcaacattcaaa |
44611579 |
T |
|
| Q |
201 |
ccggttatgttgaaaagcttgatctacacgattcatattat------ttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatct |
294 |
Q |
| |
|
| ||||||||| ||| |||||||| || | || ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611580 |
ctggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaatccttcaataactgagttgcaacatctaacatatct |
44611679 |
T |
|
| Q |
295 |
agacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgagggg |
394 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||| |||||||||||||| || ||| |||||||| |||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
44611680 |
aaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaacttaagataccttgatctctcaaatagtggttttgatggg |
44611779 |
T |
|
| Q |
395 |
aagattc |
401 |
Q |
| |
|
||||||| |
|
|
| T |
44611780 |
aagattc |
44611786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 100 - 447
Target Start/End: Original strand, 35898771 - 35899124
Alignment:
| Q |
100 |
caaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaa |
199 |
Q |
| |
|
|||||||||| ||| ||| || || || |||||||| ||||||| || |||||| ||| ||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
35898771 |
caaacaaggccttcaagacgagtacggtatgttgtctacatggaatgatagtccaaatgcagattgctgcaaatggaaaggagttcaatgcaacaaccaa |
35898870 |
T |
|
| Q |
200 |
accggttatgttgaaaagcttgatctacacgattcatat------tatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatc |
293 |
Q |
| |
|
|| |||||| || ||| |||||| | || | |||| | |||||||| || ||||||| |||| ||||||||| ||||||||||| |||||| |
|
|
| T |
35898871 |
actggttatattcaaagtcttgatttgcatggttcaaaaacacgctatttgagaggcaaaatcaaccctttaataactgaattgcaacatcttacatatt |
35898970 |
T |
|
| Q |
294 |
tagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggg |
393 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||| |||||||||||||| |||||| || || |
|
|
| T |
35898971 |
tagaccttggttttttgaatactagtggtcaaatcccaaaatttattggctccttcagcaacttgcgatacattgatctctcaaatagtggtttcgatgg |
35899070 |
T |
|
| Q |
394 |
gaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcag |
447 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||| |||||| ||||| ||||||| |
|
|
| T |
35899071 |
gaagattcctgctcagcttaggaatctctcattgttgcaataccttgatctcag |
35899124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 510
Target Start/End: Complemental strand, 11544933 - 11544676
Alignment:
| Q |
257 |
aatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaact |
356 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||||||||||| | ||| || | |||||| |||||||||||||| || || | ||| | |
|
|
| T |
11544933 |
aatccttcaataactgagttacaacatctaaaatatttagacctcagtagtatgattattttcactcaaatcccaaaatttattggctccttaaccaagt |
11544834 |
T |
|
| Q |
357 |
tacgataccttgatctctcaaatggtggttatgaggggaagattc----ctactcaacttgggaatctctcacaattgcaacaccttaatctcagattta |
452 |
Q |
| |
|
|| |||||||| ||||||||||| || |||| | | |||||||| || |||||||||| ||||||||||| ||| ||||||| |||| || | | |
|
|
| T |
11544833 |
tatgataccttaatctctcaaatagttattatcatgcgaagattcattccttctcaacttggcaatctctcacagttgagacaccttgatcttagctaca |
11544734 |
T |
|
| Q |
453 |
atgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatctct |
510 |
Q |
| |
|
|||| || ||||| ||| ||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
11544733 |
atgaactcattggagaaattcctttccaactcggaaatctttcattgttgcagtctct |
11544676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 510
Target Start/End: Original strand, 44612085 - 44612199
Alignment:
| Q |
396 |
agattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc |
495 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||| |||| || ||||| || |||| ||||||||||||||| ||||||||||| |
|
|
| T |
44612085 |
agattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatctttc |
44612184 |
T |
|
| Q |
496 |
gttattgcaatctct |
510 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
44612185 |
attgttgcagtctct |
44612199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 100 - 495
Target Start/End: Complemental strand, 29228939 - 29228546
Alignment:
| Q |
100 |
caaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaa |
199 |
Q |
| |
|
|||||||||| || |||||| ||| |||||||| | ||||||| |||||||||||||| ||||| ||||||||| || ||||||||| ||| |
|
|
| T |
29228939 |
caaacaaggccttaaagatgagaatgtcatgttgttcacatggaaagacggtccaactgcagattgttgcaaatgggaa--------atgcaacaaccaa |
29228848 |
T |
|
| Q |
200 |
accggttatgttgaaaagcttgatctacacgattc------atattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatc |
293 |
Q |
| |
|
|| ||||||||| ||| |||||||| || ||| | | ||||||||||||||||| ||| ||||| |||||||| |||||||||||| ||||| |
|
|
| T |
29228847 |
actggttatgttcaaagtcttgatctgcatcgttcggaaacaaactatttgagtggtgaaataaattcttcactaactgagctgcaacatctaaaatatc |
29228748 |
T |
|
| Q |
294 |
tagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggg |
393 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||| |||| |||||| ||||||||| ||| |||||| || |
|
|
| T |
29228747 |
tagacctcagttatttgcatactagtggtcaaatcccaaaatttattggctccttcagcaagttacaatacctcaatctctcaacaggtcattatgatgg |
29228648 |
T |
|
| Q |
394 |
gaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctt |
493 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||| |||| || ||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
29228647 |
gaagattccttctcaacttggaaatctctcacaattgcaacaccttgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatctt |
29228548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 100 - 495
Target Start/End: Complemental strand, 29342238 - 29341845
Alignment:
| Q |
100 |
caaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaa |
199 |
Q |
| |
|
|||||||||| || |||||| ||| |||||||| | ||||||| |||||||||||||| ||||| ||||||||| || ||||||||| ||| |
|
|
| T |
29342238 |
caaacaaggccttaaagatgagaatgtcatgttgttcacatggaaagacggtccaactgcagattgttgcaaatgggaa--------atgcaacaaccaa |
29342147 |
T |
|
| Q |
200 |
accggttatgttgaaaagcttgatctacacgattc------atattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatc |
293 |
Q |
| |
|
|| ||||||||| ||| |||||||| || ||| | | ||||||||||||||||| ||| ||||| |||||||| |||||||||||| ||||| |
|
|
| T |
29342146 |
actggttatgttcaaagtcttgatctgcatcgttcggaaacaaactatttgagtggtgaaataaattcttcactaactgagctgcaacatctaaaatatc |
29342047 |
T |
|
| Q |
294 |
tagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggg |
393 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||| |||| |||||| ||||||||| ||| |||||| || |
|
|
| T |
29342046 |
tagacctcagttatttgcatactagtggtcaaatcccaaaatttattggctccttcagcaagttacaatacctcaatctctcaacaggtcattatgatgg |
29341947 |
T |
|
| Q |
394 |
gaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctt |
493 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||| |||| || ||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
29341946 |
gaagattccttctcaacttggaaatctctcacaattgcaacaccttgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatctt |
29341847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 29508378 - 29508253
Alignment:
| Q |
100 |
caaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaa |
199 |
Q |
| |
|
|||| ||||| ||| |||||| ||||||||||||||| |||||||||||| |||| || ||||||||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
29508378 |
caaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaagattgctgcaaatggaagggagttcgatgcaacaatcaa |
29508279 |
T |
|
| Q |
200 |
accggttatgttgaaaagcttgatct |
225 |
Q |
| |
|
|| ||||||||| ||| |||||||| |
|
|
| T |
29508278 |
acaggttatgttcaaagacttgatct |
29508253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 410 - 492
Target Start/End: Complemental strand, 29508197 - 29508115
Alignment:
| Q |
410 |
cttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct |
492 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| |||||| || ||||| |||| || |||||||| |||||||| |
|
|
| T |
29508197 |
cttggaaatctctcacaattgcaacaccttgatctcagaggtaatgaactcattggagcaattcccttccaacttggaaatct |
29508115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 495
Target Start/End: Complemental strand, 29507624 - 29507536
Alignment:
| Q |
407 |
caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc |
495 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||||||| | ||||| || ||||| |||||||||| |||||| ||||||||| |
|
|
| T |
29507624 |
caacttggaaatctctcacaattacaacaccttgatctcagctacaatgaactaattggagcaatccctttacaactccaaaatctttc |
29507536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 492
Target Start/End: Complemental strand, 29507696 - 29507611
Alignment:
| Q |
407 |
caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct |
492 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| ||||| || ||||| |||| || |||||||| |||||||| |
|
|
| T |
29507696 |
caacttggaaatctctcacaattgcaacaccttgatctcagcgaaaatgaactcattggagcaattcccttccaacttggaaatct |
29507611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 492
Target Start/End: Complemental strand, 29507768 - 29507683
Alignment:
| Q |
407 |
caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct |
492 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| ||||| || ||||| |||| || |||||||| |||||||| |
|
|
| T |
29507768 |
caacttggaaatctctcacaattgcaacaccttgatctcagcagaaatgaactcattggagcaattcccttccaacttggaaatct |
29507683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 29507912 - 29507874
Alignment:
| Q |
407 |
caacttgggaatctctcacaattgcaacaccttaatctc |
445 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
29507912 |
caacttggaaatctctcacaattgcaacaccttgatctc |
29507874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 29507984 - 29507946
Alignment:
| Q |
407 |
caacttgggaatctctcacaattgcaacaccttaatctc |
445 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
29507984 |
caacttggaaatctctcacaattgcaacaccttgatctc |
29507946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 29508128 - 29508090
Alignment:
| Q |
407 |
caacttgggaatctctcacaattgcaacaccttaatctc |
445 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
29508128 |
caacttggaaatctctcacaattgcaacaccttgatctc |
29508090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 492
Target Start/End: Complemental strand, 29507840 - 29507755
Alignment:
| Q |
407 |
caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct |
492 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||||||| | ||||| || ||||| ||| || |||||||| |||||||| |
|
|
| T |
29507840 |
caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct |
29507755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 492
Target Start/End: Complemental strand, 29508056 - 29507971
Alignment:
| Q |
407 |
caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct |
492 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||||||| | ||||| || ||||| ||| || |||||||| |||||||| |
|
|
| T |
29508056 |
caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct |
29507971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 685 times since January 2019
Visitors: 1103