View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0029_low_3 (Length: 412)

Name: NF0029_low_3
Description: NF0029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0029_low_3
NF0029_low_3
[»] chr4 (2 HSPs)
chr4 (148-412)||(25739462-25739726)
chr4 (179-411)||(25743099-25743333)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 148 - 412
Target Start/End: Original strand, 25739462 - 25739726
Alignment:
Q  148 caactatatttttgtaaattgatgttatatgtgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagttcatgtctctcggttaaaatg 247  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  25739462 caactatatttttgtaaattgatgttatatatgtccaacatcgtaggtatgtttaaggttgttgtttgtgtgttaaagtccatgtctctcagttaaaatg 25739561  T
Q  248 tttaggatattttgtttttgcttctaaacctttgtttcatacattgatcaaattgttttctcgtctgtctgtctttccttagagattttccctttattat 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25739562 tttaggatattttgtttttgcttctaaacctttgtttcatacattgatcaaattgttttctcgtctgtctgtctttccttagaaattttccctttattat 25739661  T
Q  348 tgagaaatttgaagtccttgttgtttttgtggatattttttagtaatctttttgtagattaagtt 412  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25739662 tgagaaatttgaagtacttggtgtttttgtggatattttttagtaatctttttgtagattaagtt 25739726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 179 - 411
Target Start/End: Original strand, 25743099 - 25743333
Alignment:
Q  179 tgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagttcatgtctc--tcggttaaaatgtttaggatattttgtttttgcttctaaac 276  Q
    ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||  || ||||||||||||| ||||||| ||||||||||||||||    
T  25743099 tgtccaacatcttaggtatgtttaaggttgttgtttgtgtgttcaagttcatgtctcactcagttaaaatgtttaagatattt-gtttttgcttctaaac 25743197  T
Q  277 ctttgtttcatacattgatcaaattgttttctcgtctgtctgtctttccttagagattttccctttattattgagaaatttgaagtccttgttgtttttg 376  Q
     ||| ||||| || ||||||||||||||||||| |||||||||||| ||||||| ||||||  ||||||||||||||||||||||| |||| |||||||     
T  25743198 ttttatttcagactttgatcaaattgttttctcttctgtctgtcttaccttagaaattttcattttattattgagaaatttgaagtacttggtgtttttt 25743297  T
Q  377 tggatatttttt-agtaatctttttgtagattaagt 411  Q
    ||||| |||||| | |||||||||||||||||||||    
T  25743298 tggattttttttcaataatctttttgtagattaagt 25743333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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