View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0033-Insertion-1 (Length: 889)

Name: NF0033-Insertion-1
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0033-Insertion-1
NF0033-Insertion-1
[»] chr4 (10 HSPs)
chr4 (56-380)||(26859997-26860322)
chr4 (726-883)||(26861592-26861749)
chr4 (512-681)||(26860453-26860622)
chr4 (626-703)||(2824623-2824700)
chr4 (630-691)||(44074888-44074950)
chr4 (652-714)||(49607933-49607995)
chr4 (666-711)||(2766737-2766782)
chr4 (630-711)||(38690701-38690782)
chr4 (451-487)||(26860393-26860429)
chr4 (677-711)||(25104409-25104443)
[»] chr2 (8 HSPs)
chr2 (586-704)||(24202138-24202259)
chr2 (625-711)||(12183714-12183800)
chr2 (657-715)||(38790070-38790128)
chr2 (647-711)||(37592201-37592265)
chr2 (597-711)||(36755621-36755738)
chr2 (632-695)||(43684315-43684378)
chr2 (624-662)||(1232224-1232262)
chr2 (629-694)||(31149098-31149162)
[»] chr7 (11 HSPs)
chr7 (590-704)||(44662449-44662566)
chr7 (646-711)||(6548691-6548756)
chr7 (626-704)||(46195949-46196027)
chr7 (625-704)||(29357831-29357909)
chr7 (646-711)||(5228121-5228186)
chr7 (646-711)||(13295354-13295419)
chr7 (630-711)||(14707327-14707408)
chr7 (630-694)||(40011747-40011811)
chr7 (647-704)||(20013633-20013690)
chr7 (646-695)||(29132010-29132059)
chr7 (630-690)||(42887189-42887250)
[»] chr5 (1 HSPs)
chr5 (595-711)||(20191439-20191557)
[»] chr3 (12 HSPs)
chr3 (622-711)||(48717440-48717529)
chr3 (655-711)||(54964520-54964576)
chr3 (629-711)||(39739308-39739390)
chr3 (630-711)||(27394542-27394623)
chr3 (646-711)||(50271780-50271845)
chr3 (629-694)||(50381748-50381813)
chr3 (637-711)||(31435480-31435554)
chr3 (629-711)||(47864670-47864752)
chr3 (598-711)||(50676846-50676962)
chr3 (646-711)||(29645806-29645871)
chr3 (646-711)||(45431678-45431743)
chr3 (646-703)||(49429511-49429568)
[»] chr1 (7 HSPs)
chr1 (626-711)||(8310685-8310769)
chr1 (630-711)||(19424081-19424162)
chr1 (833-886)||(36016231-36016284)
chr1 (625-711)||(25299889-25299975)
chr1 (630-693)||(10790490-10790553)
chr1 (646-711)||(29332335-29332400)
chr1 (625-693)||(32635170-32635239)
[»] chr8 (5 HSPs)
chr8 (839-887)||(30998824-30998872)
chr8 (630-712)||(19957299-19957381)
chr8 (588-704)||(31220334-31220451)
chr8 (626-704)||(30659984-30660062)
chr8 (626-711)||(41375518-41375603)
[»] chr6 (4 HSPs)
chr6 (629-711)||(29321955-29322037)
chr6 (628-694)||(34368194-34368260)
chr6 (646-711)||(5641669-5641734)
chr6 (664-711)||(3219145-3219192)
[»] scaffold0262 (1 HSPs)
scaffold0262 (607-693)||(2550-2639)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 56 - 380
Target Start/End: Original strand, 26859997 - 26860322
Alignment:
Q  56 ggatgctttgacgcttttgattcacgaggagagagtttcgtcttctcgaagacaagtagagttgcagagagaaagtggttgaattgaaggagaaaggtga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26859997 ggatgctttgacgcttttgattcacgaggagagagtttcgtcttctcgaagacaagtagagttgcagagagaaagtggttgaattgaaggagaaaggtga 26860096  T
Q  156 aaaagagaagaaataatctagtgagagaatgtagtggtgggtttaagtttatttttctcaatagtaaacagtaattttggatttt-aaaaataaataaat 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  26860097 aaaagagaagaaataatctagtgagagaatgtagtggtgggtttaagtttatttttctcaatagtaaacagtaattttggattttaaaaaaaaaaaaaat 26860196  T
Q  255 tagtgttgcttagtggcaacgtggcgggtaaggaagtggaggtgagcatttaaactggcggaagtgcccgcgcaataagaatggaacaacagtggcaaac 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26860197 tagtgttgcttagtggcaacgtggcgggtaaggaagtggaggtgagcatttaaactggcggaagtgcccgcgcaataagaatggaacaacagtggcaaac 26860296  T
Q  355 ccatgtcaagtgtaattgtggagtgt 380  Q
    ||||||||||||||||||||||||||    
T  26860297 ccatgtcaagtgtaattgtggagtgt 26860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 726 - 883
Target Start/End: Original strand, 26861592 - 26861749
Alignment:
Q  726 ctaaacagataactttaggaaagctgcctaaacataagaaaaatgatctcacacacgtttaggaggcaccactataaaaccaaccggtttgaaataacgt 825  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  26861592 ctaaacaaataactttaggaaagctgcctaaacataagaaaaatgatctcacacatgtttaggaggcaccactatgaaaccaaccggtttgaaataacgt 26861691  T
Q  826 gtcaaaggtgcccaaaaaagtcgcatgaaaggaatagatgatcaacatcctccatctt 883  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  26861692 gtcaaaggtgctcaaaaaagtcgcatgaaaggaatagatgatcgacatcctccatctt 26861749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 512 - 681
Target Start/End: Original strand, 26860453 - 26860622
Alignment:
Q  512 gttaagtaggcatgtgaatggaaattcaaattgaattttcacacatgcaagtcaagttagattaaaaactaaacagatagtccctgtgagattaactcac 611  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||    
T  26860453 gttaagtaggcatgtgaatagaaattcaaattgaattttcacgcatgcaagtcaagctagattaaaaactaaatagacagttcctgtgagattaactcac 26860552  T
Q  612 ttggtaaatgatacattatatatgcagggattgaggttcgaatcccggacatcccactattttaccttta 681  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  26860553 ttggtaaaagatacattatatatgcagggattggggttcgaatcccgaacaccccactattttaccttta 26860622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 626 - 703
Target Start/End: Original strand, 2824623 - 2824700
Alignment:
Q  626 attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgcta 703  Q
    |||||||||| |||| | |  |||||||  |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  2824623 attatatatgtaggggtcggagttcgaactccggacatcccactatttcacctttaaggtgaatttctccagccgcta 2824700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 630 - 691
Target Start/End: Original strand, 44074888 - 44074950
Alignment:
Q  630 tatatgcagggattgaggttcgaatcccggacatcccactattttacctt-taaggtgaattt 691  Q
    |||||||||||||||| |||||||||||||||| ||||||  || ||||| ||||||||||||    
T  44074888 tatatgcagggattgaagttcgaatcccggacaccccacttattcaccttataaggtgaattt 44074950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 714
Target Start/End: Original strand, 49607933 - 49607995
Alignment:
Q  652 aatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactttac 714  Q
    |||||| |||| ||||||  |||||||||||||||||||||||  ||| ||||||||||||||    
T  49607933 aatcccagacaccccacttatttacctttaaggtgaatttctctagccactagactactttac 49607995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 666 - 711
Target Start/End: Complemental strand, 2766782 - 2766737
Alignment:
Q  666 cactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||    
T  2766782 cactatttcacctttaaggtgaatttctccagccgctaggctactt 2766737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 711
Target Start/End: Original strand, 38690701 - 38690782
Alignment:
Q  630 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||||||||| | | |||||||| |||||||| ||||||  ||  |||||||||||||||||||  |||||||| ||||||    
T  38690701 tatatgcaggggtcggggttcgaaccccggacaccccacttattctcctttaaggtgaatttctctagccgctaggctactt 38690782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 487
Target Start/End: Original strand, 26860393 - 26860429
Alignment:
Q  451 tttttgtaattgtaattgtaacctttatttgcttata 487  Q
    ||||||||||||||| |||||||||||||||||||||    
T  26860393 tttttgtaattgtaaatgtaacctttatttgcttata 26860429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 677 - 711
Target Start/End: Original strand, 25104409 - 25104443
Alignment:
Q  677 ctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||||||||||||||||||||| |||||||||||    
T  25104409 ctttaaggtgaatttctccggccactagactactt 25104443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 586 - 704
Target Start/End: Original strand, 24202138 - 24202259
Alignment:
Q  586 agatagtccctgtgagattaactcacttggtaaatgata---cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaa 682  Q
    |||||||||| ||||| ||| ||||||||||||  ||||   |||||| |||||||||   | |||||||| |||||||| |||||||||| ||||||||    
T  24202138 agatagtccccgtgagcttagctcacttggtaagggataatgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaa 24202237  T
Q  683 ggtgaatttctccggccgctag 704  Q
    ||||||||||||| ||||||||    
T  24202238 ggtgaatttctccagccgctag 24202259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 625 - 711
Target Start/End: Complemental strand, 12183800 - 12183714
Alignment:
Q  625 cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||||| ||||||||| | | | ||||||  || ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  12183800 cattatgtatgcaggggtcgggattcgaactccagacatcccactattttacctttaaggtgaatttctccgatcgctagactactt 12183714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 657 - 715
Target Start/End: Complemental strand, 38790128 - 38790070
Alignment:
Q  657 cggacatcccactattttacctttaaggtgaatttctccggccgctagactactttacc 715  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  38790128 cggacaccccactatttcacctttaagatgaatttctccggccgctagactactttacc 38790070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 711
Target Start/End: Complemental strand, 37592265 - 37592201
Alignment:
Q  647 gttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||||| ||| |||| ||||||  |||||||||||||||||||||||  |||||||||||||||    
T  37592265 gttcgaaccccagacaccccacttatttacctttaaggtgaatttctctagccgctagactactt 37592201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 597 - 711
Target Start/End: Original strand, 36755621 - 36755738
Alignment:
Q  597 gtgagattaactcacttggtaaatgatac---attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttct 693  Q
    ||||| ||||||||||||||||  ||||    |||||||||  |||| | | |||| ||| |||||||| || ||||||| ||||||||||||| |||||    
T  36755621 gtgagcttaactcacttggtaagggataatggattatatatataggggtcggggtttgaaccccggacacccaactatttcacctttaaggtgactttct 36755720  T
Q  694 ccggccgctagactactt 711  Q
    |||| |||||| ||||||    
T  36755721 ccggtcgctaggctactt 36755738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 695
Target Start/End: Original strand, 43684315 - 43684378
Alignment:
Q  632 tatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctcc 695  Q
    |||||||||  ||||||||||| |||| ||| ||||||  || |||||||||||||||||||||    
T  43684315 tatgcaggggctgaggttcgaaccccgaacaccccacttattcacctttaaggtgaatttctcc 43684378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 624 - 662
Target Start/End: Original strand, 1232224 - 1232262
Alignment:
Q  624 acattatatatgcagggattgaggttcgaatcccggaca 662  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  1232224 acattttatatgcaggggttgaggttcgaatcccggaca 1232262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 694
Target Start/End: Complemental strand, 31149162 - 31149098
Alignment:
Q  629 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 694  Q
    |||| ||||||| |||||||||||| ||| |||| |||||| ||| | ||||||||||||||||||    
T  31149162 atatgtgcaggg-ttgaggttcgaaccccagacaccccactttttaatctttaaggtgaatttctc 31149098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 590 - 704
Target Start/End: Complemental strand, 44662566 - 44662449
Alignment:
Q  590 agtccctgtgagattaactcacttggtaaatgata---cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtg 686  Q
    |||||||||||| ||| |||||| |||||  ||||   |||||| |||||||||   | |||||||| |||||||| |||||||||| ||||||||||||    
T  44662566 agtccctgtgagcttagctcactaggtaagggataatgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaaggtg 44662467  T
Q  687 aatttctccggccgctag 704  Q
    ||||||||| ||||||||    
T  44662466 aatttctccagccgctag 44662449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 646 - 711
Target Start/End: Complemental strand, 6548756 - 6548691
Alignment:
Q  646 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||||||  ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  6548756 ggttcgaactccggacaccccactatttcacctttaaggtgaatttctccggccgctaggctactt 6548691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 626 - 704
Target Start/End: Original strand, 46195949 - 46196027
Alignment:
Q  626 attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctag 704  Q
    ||||| ||||||||| | | |||| ||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  46195949 attatgtatgcaggggtcggggtttgaaccccggacaccccactatttcacctttaaggtgaatttctccagccgctag 46196027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 625 - 704
Target Start/End: Original strand, 29357831 - 29357909
Alignment:
Q  625 cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctag 704  Q
    ||||||||||||||||   ||| |||||| || |||||  ||||||||| ||||||||||||||||||| ||||||||||    
T  29357831 cattatatatgcagggccggag-ttcgaaccctggacactccactatttcacctttaaggtgaatttcttcggccgctag 29357909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 711
Target Start/End: Original strand, 5228121 - 5228186
Alignment:
Q  646 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||||||||| ||||| ||||||  || ||||||||||||||||||||  |||||||| ||||||    
T  5228121 ggttcgaatcctggacaccccacttattcacctttaaggtgaatttctctagccgctaggctactt 5228186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 711
Target Start/End: Complemental strand, 13295419 - 13295354
Alignment:
Q  646 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||||||| | |||| ||| || ||||| ||||||||||||||||||||| |||||||| ||||||    
T  13295419 ggttcgaacctcggatatctcattatttcacctttaaggtgaatttctccagccgctaggctactt 13295354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 711
Target Start/End: Original strand, 14707327 - 14707408
Alignment:
Q  630 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||||||||| ||| |||||||| |||||||| ||||||  || |||||||  |||||||||||  |||| ||||||||||    
T  14707327 tatatgcaggggttggggttcgaaccccggacaccccacttattcacctttatagtgaatttctctagccgttagactactt 14707408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 630 - 694
Target Start/End: Original strand, 40011747 - 40011811
Alignment:
Q  630 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 694  Q
    ||||||||||| | |||||||||| |||| ||||||||||  ||||| ||||| |||||||||||    
T  40011747 tatatgcaggggtcgaggttcgaaccccgaacatcccacttatttacttttaaagtgaatttctc 40011811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 704
Target Start/End: Original strand, 20013633 - 20013690
Alignment:
Q  647 gttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctag 704  Q
    |||||||||||||||||||||||  |  ||||||||| ||||||||||  ||||||||    
T  20013633 gttcgaatcccggacatcccacttatccacctttaagatgaatttctctagccgctag 20013690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 695
Target Start/End: Complemental strand, 29132059 - 29132010
Alignment:
Q  646 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctcc 695  Q
    |||| ||| ||| |||| |||||||||||| |||||||||||||||||||    
T  29132059 ggtttgaaccccagacaccccactattttatctttaaggtgaatttctcc 29132010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 690
Target Start/End: Original strand, 42887189 - 42887250
Alignment:
Q  630 tatatgcagggattgaggttcgaatcccggacatcccactattttacctt-taaggtgaatt 690  Q
    |||||||||||  ||||||||||| |||||||| ||||||  |||||||| |||||||||||    
T  42887189 tatatgcaggggctgaggttcgaaccccggacaccccacttatttaccttataaggtgaatt 42887250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 595 - 711
Target Start/End: Original strand, 20191439 - 20191557
Alignment:
Q  595 ctgtgagattaactcacttggtaaatgata---cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaattt 691  Q
    ||||||| ||||||||||||||||  ||||   |||| ||||||||||| | | |||||||| ||||||||  |||||  || ||||||||||| |||||    
T  20191439 ctgtgagcttaactcacttggtaagggataatgcatt-tatatgcaggggtcggggttcgaaccccggacactccacttattcacctttaaggtaaattt 20191537  T
Q  692 ctccggccgctagactactt 711  Q
    ||| |||| |||||||||||    
T  20191538 ctctggccactagactactt 20191557  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 622 - 711
Target Start/End: Original strand, 48717440 - 48717529
Alignment:
Q  622 atacattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||||||| ||||||||| | | |||||||| |||  ||| |||||| ||| | ||||||||||||||||||| ||||||| |||||||    
T  48717440 atacattatgtatgcaggggtaggggttcgaaccccaaacaccccactttttcatctttaaggtgaatttctccagccgctaaactactt 48717529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 711
Target Start/End: Complemental strand, 54964576 - 54964520
Alignment:
Q  655 cccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||||||| |||||||||| |||||||||||| |||||||| |||||||| ||||||    
T  54964576 cccggacaccccactatttcacctttaaggtgtatttctccagccgctaggctactt 54964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 711
Target Start/End: Original strand, 39739308 - 39739390
Alignment:
Q  629 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||| ||||||||||| |||||||| |||||||| | ||||  || | ||||||||||||||||||  ||| |||||||||||    
T  39739308 atatgtgcagggattggggttcgaaccccggacacctcacttattcatctttaaggtgaatttctctagccactagactactt 39739390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 711
Target Start/End: Original strand, 27394542 - 27394623
Alignment:
Q  630 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||||||||||  || |||| ||| |||||||| ||||||  || ||||||||||||||||||||  |||||||| ||||||    
T  27394542 tatatgcaggggctggggtttgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctactt 27394623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 711
Target Start/End: Original strand, 50271780 - 50271845
Alignment:
Q  646 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||||||| |||| ||||||||||  || ||||||||||||||||||||   ||||||||||||||    
T  50271780 ggttcgaaccccgtacatcccacttattcacctttaaggtgaatttctctaaccgctagactactt 50271845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 694
Target Start/End: Original strand, 50381748 - 50381813
Alignment:
Q  629 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 694  Q
    |||||||||||| | | ||||||||||||||||| ||||||  || | ||||||||||||||||||    
T  50381748 atatatgcaggggtcggggttcgaatcccggacaccccacttattcatctttaaggtgaatttctc 50381813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 637 - 711
Target Start/End: Complemental strand, 31435554 - 31435480
Alignment:
Q  637 agggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||| ||| |||||||| | |||||||||||||  || | ||||||||||||||||||  ||| |||||||||||    
T  31435554 aggggttggggttcgaacctcggacatcccacttattcatctttaaggtgaatttctctagccactagactactt 31435480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 711
Target Start/End: Original strand, 47864670 - 47864752
Alignment:
Q  629 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||| ||||||| ||| |||||||| |||||||| ||||||  || | ||||||||||||||||||  ||| |||| ||||||    
T  47864670 atatgtgcaggggttggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctactt 47864752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 598 - 711
Target Start/End: Complemental strand, 50676962 - 50676846
Alignment:
Q  598 tgagattaactcacttggtaaatga---tacattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 694  Q
    |||| ||||||||||||||||  ||   |||||  |||||| |||| ||| |||||||| |||| ||| ||||||  || ||||||||||||||||||||    
T  50676962 tgagtttaactcacttggtaagggacaatacatattatatgtaggggttggggttcgaaccccgaacaccccacttattcacctttaaggtgaatttctc 50676863  T
Q  695 cggccgctagactactt 711  Q
       || |||||||||||    
T  50676862 taaccactagactactt 50676846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 711
Target Start/End: Complemental strand, 29645871 - 29645806
Alignment:
Q  646 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||||||| |||||||| ||||||  || | ||||||||||||||||||  ||| |||||||||||    
T  29645871 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactagactactt 29645806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 711
Target Start/End: Original strand, 45431678 - 45431743
Alignment:
Q  646 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||||||| |||||||| ||||||  || |||||||||||||||||| |  |||||||| ||||||    
T  45431678 ggttcgaaccccggacaccccacttattcacctttaaggtgaatttccctagccgctaggctactt 45431743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 703
Target Start/End: Original strand, 49429511 - 49429568
Alignment:
Q  646 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgcta 703  Q
    |||||||| |||||||| ||||||  || ||||||||||||||||||||  |||||||    
T  49429511 ggttcgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgcta 49429568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 626 - 711
Target Start/End: Original strand, 8310685 - 8310769
Alignment:
Q  626 attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||||||||||||| |   |||||||| |||||| | |||||||||||| |||||||||||||||||||  ||||||| ||||||    
T  8310685 attatatatgcaggggtcagggttcgaaccccggataccccactatttta-ctttaaggtgaatttctccaaccgctaggctactt 8310769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 630 - 711
Target Start/End: Original strand, 19424081 - 19424162
Alignment:
Q  630 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||||||||| | | |||||||| |||||||| ||||||  || ||||||||||||||||||||  |||||||| ||||||    
T  19424081 tatatgcaggggtcggggttcgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctactt 19424162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 833 - 886
Target Start/End: Complemental strand, 36016284 - 36016231
Alignment:
Q  833 gtgcccaaaaaagtcgcatgaaaggaatagatgatcaacatcctccatcttgcc 886  Q
    |||||||||||| |||||||||||||| ||||| |||| |||||||||||||||    
T  36016284 gtgcccaaaaaaatcgcatgaaaggaagagatggtcaatatcctccatcttgcc 36016231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 625 - 711
Target Start/End: Original strand, 25299889 - 25299975
Alignment:
Q  625 cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||||||||||||||| |   |||||| | || ||||| |||||||||| ||||  ||||||||||||||| |||||||| ||||||    
T  25299889 cattatatatgcaggggtcagggttcgtaccctggacaccccactatttcacctcgaaggtgaatttctccagccgctaggctactt 25299975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 693
Target Start/End: Complemental strand, 10790553 - 10790490
Alignment:
Q  630 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttct 693  Q
    ||||||||||| ||| |||| ||| |||||||| || |||  ||||||||||||||||||||||    
T  10790553 tatatgcaggggttggggtttgaaccccggacaccctacttatttacctttaaggtgaatttct 10790490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 711
Target Start/End: Original strand, 29332335 - 29332400
Alignment:
Q  646 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||| ||| |||||||| ||||||  || ||||||||||||||||||||  |||||||| ||||||    
T  29332335 ggtttgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctactt 29332400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 693
Target Start/End: Original strand, 32635170 - 32635239
Alignment:
Q  625 cattatatatgcagggattgaggttcgaatcccggacatcccactattttaccttta-aggtgaatttct 693  Q
    |||||||||||||||| ||| |||||||| |||||||| ||||||  || ||||| | ||||||||||||    
T  32635170 cattatatatgcaggggttggggttcgaaccccggacaccccacttattcaccttaagaggtgaatttct 32635239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 839 - 887
Target Start/End: Original strand, 30998824 - 30998872
Alignment:
Q  839 aaaaaagtcgcatgaaaggaatagatgatcaacatcctccatcttgcca 887  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  30998824 aaaaaagtcgtaggaaaggaatagatgatcaatatcctccatcttgcca 30998872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 630 - 712
Target Start/End: Complemental strand, 19957381 - 19957299
Alignment:
Q  630 tatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactacttt 712  Q
    |||||||||||   |||||||||| |||||||| ||||||  || ||||||||||||||||||||  || ||||| |||||||    
T  19957381 tatatgcaggggacgaggttcgaaccccggacaccccacttattcacctttaaggtgaatttctctagcagctaggctacttt 19957299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 588 - 704
Target Start/End: Original strand, 31220334 - 31220451
Alignment:
Q  588 atagtccctgtgagattaactcacttggtaaatgata---cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaagg 684  Q
    |||||||| ||||| ||| ||||||||||||  ||||   |||||||||||||||   || |||| |||||| |||||  ||||||||| || |||||||    
T  31220334 atagtccccgtgagcttagctcacttggtaagggataatgcattatatatgcaggc--tggggtttgaatcctggacactccactatttcacatttaagg 31220431  T
Q  685 tgaatttctccggccgctag 704  Q
    |||||||||  |||||||||    
T  31220432 tgaatttctttggccgctag 31220451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 626 - 704
Target Start/End: Original strand, 30659984 - 30660062
Alignment:
Q  626 attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctag 704  Q
    ||||| ||||||||| | | ||||| || |||||||| |||||||||| ||||||||||| ||||| |||  |||||||    
T  30659984 attatgtatgcaggggtcggggttcaaaccccggacaccccactatttcacctttaaggtaaatttttccaaccgctag 30660062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 711
Target Start/End: Original strand, 41375518 - 41375603
Alignment:
Q  626 attatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||| |||| |||| ||| |||| |||  ||||||| | |||||||| |||||||| |||||||||||| || ||||| ||||||    
T  41375518 attatgtatgtaggggttggggtttgaactccggacacctcactatttcacctttaaagtgaatttctccagctgctaggctactt 41375603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 711
Target Start/End: Complemental strand, 29322037 - 29321955
Alignment:
Q  629 atatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||| |||||||  || |||||||| ||| |||||||||||  |||| ||||||||||||||||||  ||| |||||||||||    
T  29322037 atatgtgcaggggctggggttcgaaccccagacatcccacttatttatctttaaggtgaatttctctagccactagactactt 29321955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 694
Target Start/End: Original strand, 34368194 - 34368260
Alignment:
Q  628 tatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttctc 694  Q
    ||||||||||||| |||||||||||| |||||| |  |||||  |||||||||||| ||||||||||    
T  34368194 tatatatgcaggggttgaggttcgaaccccggatacaccacttatttacctttaagatgaatttctc 34368260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 711
Target Start/End: Complemental strand, 5641734 - 5641669
Alignment:
Q  646 ggttcgaatcccggacatcccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    ||||||||  ||||||| ||||||  || ||||||||||||||||||||  |||||||||||||||    
T  5641734 ggttcgaactccggacaccccacttattcacctttaaggtgaatttctctagccgctagactactt 5641669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 711
Target Start/End: Complemental strand, 3219192 - 3219145
Alignment:
Q  664 cccactattttacctttaaggtgaatttctccggccgctagactactt 711  Q
    |||||||||| ||||||||| ||||||||||| ||||||| |||||||    
T  3219192 cccactatttcacctttaagatgaatttctcccgccgctaaactactt 3219145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 2550 - 2639
Alignment:
Q  607 ctcacttggtaaatgata---cattatatatgcagggattgaggttcgaatcccggacatcccactattttacctttaaggtgaatttct 693  Q
    |||||||||||||| |||   ||| |||||||||| | |||||||||||||| | |||| ||||||  ||||| |||| |||||||||||    
T  2550 ctcacttggtaaataataacacataatatatgcagaggttgaggttcgaatcgcagacaccccacttatttacttttacggtgaatttct 2639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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