View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0033-Insertion-10 (Length: 204)
Name: NF0033-Insertion-10
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033-Insertion-10 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 43329520 - 43329618
Alignment:
| Q |
106 |
tgagtgagtacaaacaaatattaatggnnnnnnnntgattcaccaatgagatttagttttcatgcatatatcaaaagaggaccttccaccttcatttag |
204 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43329520 |
tgagtgagtacaaacaaatattaatggaaaaaaaatgattcaccaatgagatttagttttcatgcatatatcaaaagaggaccttccaccttcatttag |
43329618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 43329420 - 43329449
Alignment:
| Q |
6 |
cattagattggagccatgtcggtataatat |
35 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
43329420 |
cattagattggagccatgtcggtataatat |
43329449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 588 times since January 2019
Visitors: 1099