View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033-Insertion-3 (Length: 473)
Name: NF0033-Insertion-3
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 145 - 473
Target Start/End: Original strand, 1166952 - 1167290
Alignment:
| Q |
145 |
atatgactactagcaaaataaagtcatttgttaggttttaaactaatttttaatttactaaaataaacaaataaagatgcaaagnnnnnnnctcagaatg |
244 |
Q |
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| T |
1166952 |
atatgactactagcaaaataaagtcatttgttaggttttaaactaatttttaattaactaaaataaacaaataaagatgcaaagtttttttatcagaatg |
1167051 |
T |
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| Q |
245 |
atgatgaaggtgagagatagagtttttgagca---------ctactaaacagaatatcaaagaaggaaaggggaagatcatcatgatggtcaatagtgga |
335 |
Q |
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| T |
1167052 |
atgatgaaggtgagagatagagtttttgagcatgttgagaactgctaaacagaatatcaaaaaaggaaaggggaagatcatcatgatggtcaaaagtgga |
1167151 |
T |
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| Q |
336 |
aagttcaataagtagtacaagaaatctaaacataagagtaacaggaagggcacgaaagttgccaagcccaaacctgctacccatgctttgaagcctc-aa |
434 |
Q |
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| T |
1167152 |
aagttcaataagtagtacaagaaatctaaacataagagtaacaggaagggcacgaaagttgccaagcccaaacctgctacccatgcttcgaagtctctaa |
1167251 |
T |
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| Q |
435 |
ggcagtgggggctaaggaggacacatgtttccagtgcag |
473 |
Q |
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| T |
1167252 |
ggcagtgggggctaaggaggacacatgtttccagtgcag |
1167290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 23918362 - 23918230
Alignment:
| Q |
10 |
tgtgaaaatagcttcagcatggtcaaaagcacagcagcaacataagggtgaaagataaccaaacatcacaaaattgcttttgagaaaatgaaagtgcttt |
109 |
Q |
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| T |
23918362 |
tgtgaaaatagcttcagcctggtcaaaagcacagcagcaacataagggtgaaagataaccaaacatcacaaaattacttttgagaagatgaaagtgcttt |
23918263 |
T |
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| Q |
110 |
tgcacttttctaccgggtaaccaaacacccact |
142 |
Q |
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| T |
23918262 |
tgcacttttctaccgggtaaccaaacacccact |
23918230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 10854014 - 10854127
Alignment:
| Q |
32 |
tcaaaagcacagcagcaacataagggtgaaagataaccaaacatcacaaaattgcttttgagaaaatgaaagtgcttttgcacttttctaccgggtaacc |
131 |
Q |
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| T |
10854014 |
tcaaaagcacgacaacaacataagggtgaaagataaccaaacattataaaattgcttttgagaaaatgaacgtgcttttgcaccttttcatcgggtaacc |
10854113 |
T |
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| Q |
132 |
aaacacccactaaa |
145 |
Q |
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| T |
10854114 |
aaacacccactaaa |
10854127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 37267154 - 37267081
Alignment:
| Q |
63 |
gataaccaaacatcacaaaattgcttttgagaaaatgaaagtgcttttgcacttttctaccgggtaaccaaaca |
136 |
Q |
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| T |
37267154 |
gataaccaaacatcacaaaattacttttgagaagatgaacgtgcttttgcaccttttcaccgggtaaccaaaca |
37267081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 37267192 - 37267161
Alignment:
| Q |
10 |
tgtgaaaatagcttcagcatggtcaaaagcac |
41 |
Q |
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| T |
37267192 |
tgtgaaaatagcttcagcatggtcaaaagcac |
37267161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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