View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0033-Insertion-5 (Length: 473)

Name: NF0033-Insertion-5
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0033-Insertion-5
NF0033-Insertion-5
[»] chr3 (1 HSPs)
chr3 (8-461)||(39834686-39835132)


Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Original strand, 39834686 - 39835132
Alignment:
8 gttgcttgctgtttattgaattgtttgcgatataacattattccctcttctatgcttg-gtttaaaaaagatgatgtagtgtgaaactttaacacttata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||    
39834686 gttgcttgctgtttattgaattgtttgcgatataacattattccctcttctatgctttcgtttaaaaaagatgatatagtgtgaaactttaacacttata 39834785  T
107 ctaactaaactaatgtattttgcatgatgcnnnnnnnntaggtacattcacatttcacatgttatactatctttatgaccatcaaattctaattagtaat 206  Q
    ||||||||||||||||||||||||||||||        ||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||    
39834786 ctaactaaactaatgtattttgcatgatgcaaaaaaaataggtacattcacct-------gttatactatctttatgaccatcaaattctaattagtaat 39834878  T
207 ttaggtacattcacatgcaaggcggatgcaggattattgatatgaaaagagattaatttatcactgtataatgtatatattaaccaaagctatgtactta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
39834879 ttaggtacattcacatgcaaggcggatgcaggattattgatatgaaaagagattaagttatcactgtataatgtatatattaaccaaagcta-gtactta 39834977  T
307 taagttttctttgggcgttgaatttgcagccaaacattatttctactcagtttcgtgtccacttgggtcaagatattggttctacagaaaaagtatgggt 406  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
39834978 taagttttctctgggcattgaatttgcagccaaacattatttctactcagtttcgtgtcctcttgggtcaagatattggttctacagaaaaagtatgggt 39835077  T
407 cctttagtttccttgtcttaaatttttacatatcactacgtaccccattacatat 461  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
39835078 cctttagtttccttgtcttaaatatttacatatcactacgtaccccattacatat 39835132  T

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