View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0033-Insertion-5 (Length: 473)
Name: NF0033-Insertion-5
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0033-Insertion-5 |
 |  |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Original strand, 39834686 - 39835132
Alignment:
Q |
8 |
gttgcttgctgtttattgaattgtttgcgatataacattattccctcttctatgcttg-gtttaaaaaagatgatgtagtgtgaaactttaacacttata |
106 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
T |
39834686 |
gttgcttgctgtttattgaattgtttgcgatataacattattccctcttctatgctttcgtttaaaaaagatgatatagtgtgaaactttaacacttata |
39834785 |
T |
 |
Q |
107 |
ctaactaaactaatgtattttgcatgatgcnnnnnnnntaggtacattcacatttcacatgttatactatctttatgaccatcaaattctaattagtaat |
206 |
Q |
|
|
|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
T |
39834786 |
ctaactaaactaatgtattttgcatgatgcaaaaaaaataggtacattcacct-------gttatactatctttatgaccatcaaattctaattagtaat |
39834878 |
T |
 |
Q |
207 |
ttaggtacattcacatgcaaggcggatgcaggattattgatatgaaaagagattaatttatcactgtataatgtatatattaaccaaagctatgtactta |
306 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
T |
39834879 |
ttaggtacattcacatgcaaggcggatgcaggattattgatatgaaaagagattaagttatcactgtataatgtatatattaaccaaagcta-gtactta |
39834977 |
T |
 |
Q |
307 |
taagttttctttgggcgttgaatttgcagccaaacattatttctactcagtttcgtgtccacttgggtcaagatattggttctacagaaaaagtatgggt |
406 |
Q |
|
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
T |
39834978 |
taagttttctctgggcattgaatttgcagccaaacattatttctactcagtttcgtgtcctcttgggtcaagatattggttctacagaaaaagtatgggt |
39835077 |
T |
 |
Q |
407 |
cctttagtttccttgtcttaaatttttacatatcactacgtaccccattacatat |
461 |
Q |
|
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
T |
39835078 |
cctttagtttccttgtcttaaatatttacatatcactacgtaccccattacatat |
39835132 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
This website was viewed 3529 times since January 2019
Visitors: 7367