View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033-Insertion-7 (Length: 308)
Name: NF0033-Insertion-7
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 43870527 - 43870386
Alignment:
| Q |
8 |
aatcaatactatgacctgtttcccatgttttcataggtattaaagctcaagagatgcttgaacttaaaagagcaaagaagtgaagcaatcaatgattcac |
107 |
Q |
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| T |
43870527 |
aatcaatactatgacctgtttcccatgttttcataggtattaaagctcaagagatgcttgaactgaaaagagcaaagaagtgaagcaatcaatgattcac |
43870428 |
T |
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| Q |
108 |
ttagcgagcccacaaaaaactgggagcgagaaacttagaaag |
149 |
Q |
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| T |
43870427 |
ttagcgagcccacaaaaaactgggagcgagaaacttagaaag |
43870386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 197 - 306
Target Start/End: Complemental strand, 34098945 - 34098836
Alignment:
| Q |
197 |
acaatgatgcctgtgctgtctagttaaattttctcactttatcatagcacattgtatttttgttaacctgtgattgtgtctatgaatttcagagtcattc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098945 |
acaatgatgcctgtgctgtctagttaaattttctcactttatcatagcacattgtatttttgttaacctgtgattgtgtctatgaatttcagagtcattc |
34098846 |
T |
|
| Q |
297 |
ttcagttctt |
306 |
Q |
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|||||||||| |
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| T |
34098845 |
ttcagttctt |
34098836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 176
Target Start/End: Complemental strand, 34098990 - 34098960
Alignment:
| Q |
146 |
aaagataggtgaaagtgcaacatgctatcta |
176 |
Q |
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| T |
34098990 |
aaagataggtgaaagtgcaacatgctatcta |
34098960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 34552684 - 34552602
Alignment:
| Q |
8 |
aatcaatactatgacctgtttcccatgttttcataggtattaaagctcaagagatgcttgaacttaaaagagcaaagaagtga |
90 |
Q |
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|||||||| |||||||| || |||| |||| ||||| |||||| ||| ||||||| | || ||||||||| ||||||||||| |
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| T |
34552684 |
aatcaatattatgacctattcaccatattttgataggaattaaaactcgagagatgttggagcttaaaagaacaaagaagtga |
34552602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 44560913 - 44560825
Alignment:
| Q |
8 |
aatcaatactatgacctgtttcccatgttttcataggtattaaa-gctcaagagatgcttgaacttaaaagagcaaagaagtgaagcaa |
95 |
Q |
| |
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||||||| |||||||| | |||| |||||| ||| |||||||| |||||| |||||| | |||||||| || ||||||||||| |||| |
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| T |
44560913 |
aatcaattttatgacctatctcccgtgttttgataagtattaaaagctcaaaagatgcatcaacttaaaggaacaaagaagtgatgcaa |
44560825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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