View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_high_3 (Length: 378)
Name: NF0033_high_3
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 2272376 - 2272742
Alignment:
| Q |
1 |
gagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctattttacagatcatgattcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272376 |
gagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctattttacagatcatgattcat |
2272475 |
T |
|
| Q |
101 |
gatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272476 |
gatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtgga |
2272575 |
T |
|
| Q |
201 |
aattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272576 |
aattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaa |
2272675 |
T |
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| Q |
301 |
tgaataatgtttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcat |
367 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272676 |
tgaataatgcttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcat |
2272742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
157 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
231 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 46353872 - 46353947
Alignment:
| Q |
5 |
cttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctat |
81 |
Q |
| |
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|||||| ||||||||||||||||| ||||||| |||||||| ||||||||| |||| || || || ||||||||||| |
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| T |
46353872 |
cttcttatgcatttaatatgtattatcaagtgcataatcag-aaggattgggattgtgatttttcaggtttggctat |
46353947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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