View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_high_8 (Length: 322)
Name: NF0033_high_8
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 52239201 - 52238919
Alignment:
| Q |
30 |
tttgttgcttctacacgtaattctctaattgattttaacaaaaatatagtcaattttttaagtaaagctttatcaaactcatttgccatttaggtttaat |
129 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52239201 |
tttgttgcttctacacgttattctctaattgattttaacagaaatatagtcaattttttaagtaaagttttatcaaactcatttgccatttaggtttaat |
52239102 |
T |
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| Q |
130 |
tacgtgattaattttctacgtatcttctttgtgtatggatccgtttgttacataggagaattcttgatatgtattttagttttgatgaatactgctaatc |
229 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52239101 |
tacatgattaattttctacgtatcttctttgtgtatggatccgtttgttacataggagaattcttgatatgtattttagttttgatgaatactgctaatc |
52239002 |
T |
|
| Q |
230 |
ctctaagtaaaattaattctttcaaaatttatttacaaaaatatgacataatatttcttaattggatccaaccaaacttcatc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52239001 |
ctctaagtaaaattaattctttcaaaatttatttacaaaaatatgacataatatttcataattggatccaaccaaacttcatc |
52238919 |
T |
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