View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_14 (Length: 317)
Name: NF0033_low_14
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_14 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 95 - 271
Target Start/End: Original strand, 226070 - 226247
Alignment:
| Q |
95 |
tgttctaatgtaaagga-acgggtggtccaatctgaccatattcttaaaaggaacaacataaaatagttaatcatctaggagatatggattaagcatgtg |
193 |
Q |
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| T |
226070 |
tgttctgatgtaaaggataagggtggtccaatctgagcatattcttaaaaggaacaacataaaatagttaatcatctaggagatatggattaagcatgtg |
226169 |
T |
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| Q |
194 |
acaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatc |
271 |
Q |
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| T |
226170 |
acaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatc |
226247 |
T |
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Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 95 - 271
Target Start/End: Complemental strand, 14591308 - 14591131
Alignment:
| Q |
95 |
tgttctaatgtaaagga-acgggtggtccaatctgaccatattcttaaaaggaacaacataaaatagttaatcatctaggagatatggattaagcatgtg |
193 |
Q |
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| T |
14591308 |
tgttctgatgtaaaggataagggtggtccaatctgagcatattcttaaaaggaacaacataaaatagttaatcatctaggagatatggattaagcatgtg |
14591209 |
T |
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| Q |
194 |
acaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatc |
271 |
Q |
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| T |
14591208 |
acaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatc |
14591131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 39950483 - 39950556
Alignment:
| Q |
198 |
acctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatc |
271 |
Q |
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| T |
39950483 |
acctcagttccagcaattcccattgcaagtccgatatcagcttcatgaagggctggagcatcatttgttccatc |
39950556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 45762193 - 45762285
Alignment:
| Q |
6 |
acaaaaaacaattgttcctatgtttatgatgctgagaatcatagagagtcatgctcatggcttgtacctgcttttgtgtttgttaatattgtt |
98 |
Q |
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| T |
45762193 |
acaaaaaacaattgttcctatgtttatgttgctgagactcatagagagtcatgctcatggcttgtacctgcttttgtgtttgttaatattgtt |
45762285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 5420264 - 5420191
Alignment:
| Q |
198 |
acctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatc |
271 |
Q |
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| T |
5420264 |
acctcagttccagcaatacccatggcaagtccaatgtctgcttcatgaagggctggtgcatcatttgtcccatc |
5420191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 47489237 - 47489159
Alignment:
| Q |
193 |
gacaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatc |
271 |
Q |
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| T |
47489237 |
gacatacctcggttccagcaatgcccattgcaagtccaatatccgcttcatgaagtgctggcgcatcatttgtaccatc |
47489159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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