View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_15 (Length: 306)
Name: NF0033_low_15
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 11328095 - 11328344
Alignment:
| Q |
30 |
attctttccacaaatagcaatggtgtatctgaactctgcatttgcttcaatttcaattcttcatgaaatttcttcttacgcttttcctgcttcattttgc |
129 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11328095 |
attctttccgtaaatagcaatggtgtatctgaattctgcatttgcttcaatttcagttcttcatgaaatttcttcttacgcttttcctgcttcatttttc |
11328194 |
T |
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| Q |
130 |
caggttctacaccatggaacttttgagataatatacgataggcttccttaggagtcaaagttctcccgaactcatctttcctctcaatgtgaatctcctt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11328195 |
caggttctacaccatggaacttttgagataatatacgataggcttccttaggagtcaaagttctcccaaactcatctttcctctcaatgtgaatctcctt |
11328294 |
T |
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| Q |
230 |
ttcattttgtgcttcccttccttcatcctctaataccccaaccaatttgc |
279 |
Q |
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| T |
11328295 |
tttattttgtgcttcccttccttcatcctctaataccccaaccaatttgc |
11328344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 11486116 - 11486365
Alignment:
| Q |
30 |
attctttccacaaatagcaatggtgtatctgaactctgcatttgcttcaatttcaattcttcatgaaatttcttcttacgcttttcctgcttcattttgc |
129 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11486116 |
attctttccgtaaatagcaatggtgtatctgaattctgcatttgcttcaatttcagttcttcatgaaatttcttcttacgcttttcctgcttcatttttc |
11486215 |
T |
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| Q |
130 |
caggttctacaccatggaacttttgagataatatacgataggcttccttaggagtcaaagttctcccgaactcatctttcctctcaatgtgaatctcctt |
229 |
Q |
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| T |
11486216 |
caggttctacaccatggaacttttgagataatatacgataggcttccttaggagtcaaagttctcccaaactcatctttcctctcaatgtgaatctcctt |
11486315 |
T |
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| Q |
230 |
ttcattttgtgcttcccttccttcatcctctaataccccaaccaatttgc |
279 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11486316 |
tttattttgtgcttcccttccttcatcctctaataccccaaccaatttgc |
11486365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 37373005 - 37373143
Alignment:
| Q |
49 |
atggtgtatctgaactctgcatttgcttcaatttcaattcttcatgaaatttcttcttacgcttttcctgcttcattttgccaggttctacaccatggaa |
148 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||| || ||||||||| |
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| T |
37373005 |
atggtgtatccgaactcttcatttgcttcaatttcaattcttcgtaaaattgtttcatacgcttttcctgcttcattttgccaggtcctttaccatggaa |
37373104 |
T |
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| Q |
149 |
cttttgagataatatacgataggcttccttaggagtcaa |
187 |
Q |
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||| ||||| | ||| ||| ||||||||||||||||||| |
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| T |
37373105 |
cttatgagaaattatccgaaaggcttccttaggagtcaa |
37373143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 37374215 - 37374304
Alignment:
| Q |
190 |
ttctcccgaactcatctttcctctcaatgtgaatctccttttcattttgtgcttcccttccttcatcctctaataccccaaccaatttgc |
279 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||| | |||||||||||||| |
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| T |
37374215 |
ttctcccaaactcatctgtcctctcaatgtgaatctcctttttatttggtgcttcctttccttcatcctctacaatcccaaccaatttgc |
37374304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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