View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_19 (Length: 270)
Name: NF0033_low_19
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 28 - 222
Target Start/End: Complemental strand, 28102895 - 28102701
Alignment:
| Q |
28 |
agcacagaactacaaaaacaaagtgatagccaaaagaaggggccacatccgcgccttccaaaacccaaacacagtgacaacaatgccacaaaataccttc |
127 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28102895 |
agcacaaaactacaaaaacaaagtgatagccaaaagaaggggccacagccgcgccttccaaaacccaaacacaatgacaacaatgccacaaaataccttc |
28102796 |
T |
|
| Q |
128 |
ctgtcacaccataacagaccacccccaagaaatggtcatcacctccgttccgtgcactctctcgggggtttaattaaagttgttggtttctgggt |
222 |
Q |
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||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102795 |
ctgtcacaccataacagaccacccccaagcaatagccatcacctccgttccgtgcactctctcgggggtttaattaaagttgttggtttctgggt |
28102701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 31711789 - 31711983
Alignment:
| Q |
28 |
agcacagaactacaaaaacaaagtgatagccaaaagaaggggccacatccgcgccttccaaaacccaaacacagtgacaacaatgccacaaaataccttc |
127 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31711789 |
agcacaaaactacaaaaacaaagtgatagccaaaagaaggggccacaaccgcgccttccaaaacccaaacacagtgacaacaatgccacaaaatacattc |
31711888 |
T |
|
| Q |
128 |
ctgtcacaccataacagaccacccccaagaaatggtcatcacctccgttccgtgcactctctcgggggtttaattaaagttgttggtttctgggt |
222 |
Q |
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|||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
31711889 |
atgtcacaccataacagaccacccccaagcaatagccatcacctccgttccgtgcactctctcggaggtttaattaaagttgttggtttatgggt |
31711983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 28 - 222
Target Start/End: Complemental strand, 7037757 - 7037563
Alignment:
| Q |
28 |
agcacagaactacaaaaacaaagtgatagccaaaagaaggggccacatccgcgccttccaaaacccaaacacagtgacaacaatgccacaaaataccttc |
127 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7037757 |
agcacaaaactacaaaaacaaagtgatagtcaaaagaaggggccacagccgcgccttccaaaacccaaacgcagtgacaacaatgccacaaaataccttc |
7037658 |
T |
|
| Q |
128 |
ctgtcacaccataacagaccacccccaagaaatggtcatcacctccgttccgtgcactctctcgggggtttaattaaagttgttggtttctgggt |
222 |
Q |
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|||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7037657 |
atgtcacaccataacagaccacccccaagcaatagccatcacctccgttccgtgcactctctcgggggtttaattaaagttgttggtttctgggt |
7037563 |
T |
|
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