View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0033_low_2 (Length: 451)

Name: NF0033_low_2
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0033_low_2
NF0033_low_2
[»] chr4 (40 HSPs)
chr4 (40-448)||(22234644-22235063)
chr4 (178-273)||(23292926-23293021)
chr4 (178-275)||(35161060-35161157)
chr4 (178-273)||(8423658-8423753)
chr4 (178-273)||(35157925-35158020)
chr4 (189-273)||(34306744-34306828)
chr4 (178-273)||(12895214-12895309)
chr4 (180-273)||(2361915-2362008)
chr4 (218-275)||(19482743-19482800)
chr4 (178-242)||(49431050-49431114)
chr4 (178-273)||(36509032-36509127)
chr4 (178-273)||(40179576-40179671)
chr4 (178-280)||(28964181-28964283)
chr4 (208-272)||(3947702-3947766)
chr4 (178-242)||(29205468-29205532)
chr4 (178-230)||(54580006-54580058)
chr4 (178-269)||(12797282-12797373)
chr4 (202-277)||(30982803-30982878)
chr4 (178-273)||(715545-715642)
chr4 (178-273)||(752871-752968)
chr4 (222-268)||(3712458-3712504)
chr4 (202-275)||(53381528-53381602)
chr4 (178-255)||(9996864-9996941)
chr4 (218-271)||(19312410-19312463)
chr4 (203-276)||(24613627-24613700)
chr4 (208-272)||(14465006-14465070)
chr4 (178-273)||(16886633-16886726)
chr4 (202-273)||(24343560-24343632)
chr4 (224-275)||(18513173-18513224)
chr4 (218-273)||(29205532-29205587)
chr4 (226-273)||(37203324-37203371)
chr4 (202-275)||(10133756-10133830)
chr4 (225-275)||(11596295-11596345)
chr4 (181-275)||(16073421-16073515)
chr4 (119-149)||(37203220-37203250)
chr4 (178-271)||(4157173-4157266)
chr4 (218-271)||(28000672-28000725)
chr4 (182-234)||(8402721-8402773)
chr4 (180-236)||(21945529-21945585)
chr4 (230-274)||(40784029-40784073)
[»] chr1 (44 HSPs)
chr1 (121-271)||(29163323-29163477)
chr1 (178-275)||(5898204-5898301)
chr1 (178-274)||(1815281-1815377)
chr1 (178-272)||(12918969-12919063)
chr1 (184-274)||(37598861-37598951)
chr1 (178-275)||(51410049-51410146)
chr1 (138-276)||(2896058-2896195)
chr1 (178-272)||(40258874-40258968)
chr1 (202-275)||(9828103-9828176)
chr1 (180-273)||(18190048-18190141)
chr1 (178-259)||(40181895-40181976)
chr1 (119-212)||(39953147-39953239)
chr1 (216-271)||(17778615-17778670)
chr1 (178-273)||(18337353-18337448)
chr1 (178-273)||(22515827-22515922)
chr1 (129-234)||(36878437-36878541)
chr1 (178-271)||(1486646-1486744)
chr1 (202-275)||(40917808-40917881)
chr1 (178-271)||(42359391-42359484)
chr1 (218-274)||(6427539-6427595)
chr1 (201-273)||(32461393-32461465)
chr1 (206-273)||(18556385-18556452)
chr1 (178-273)||(38078601-38078696)
chr1 (182-273)||(46348323-46348414)
chr1 (222-268)||(1209821-1209867)
chr1 (184-276)||(9690210-9690303)
chr1 (182-273)||(52903277-52903365)
chr1 (223-274)||(46940747-46940798)
chr1 (202-273)||(47989556-47989627)
chr1 (178-272)||(10233277-10233374)
chr1 (178-224)||(17705576-17705621)
chr1 (178-274)||(20157283-20157385)
chr1 (222-268)||(23219608-23219654)
chr1 (178-212)||(30749864-30749898)
chr1 (178-212)||(30771315-30771349)
chr1 (178-212)||(34371737-34371771)
chr1 (178-212)||(44482254-44482288)
chr1 (178-211)||(1864882-1864915)
chr1 (220-273)||(5944360-5944413)
chr1 (178-211)||(13997907-13997940)
chr1 (220-273)||(19562556-19562608)
chr1 (180-212)||(23636050-23636082)
chr1 (202-274)||(31694638-31694710)
chr1 (178-242)||(43492465-43492529)
[»] chr6 (35 HSPs)
chr6 (178-273)||(7378003-7378098)
chr6 (178-273)||(28152122-28152217)
chr6 (178-273)||(34595158-34595253)
chr6 (180-277)||(28715321-28715418)
chr6 (179-270)||(32978842-32978933)
chr6 (121-237)||(7265569-7265684)
chr6 (218-275)||(8776906-8776963)
chr6 (202-275)||(10339052-10339125)
chr6 (178-242)||(9658903-9658967)
chr6 (217-272)||(31959213-31959268)
chr6 (178-276)||(4877967-4878064)
chr6 (178-270)||(9025448-9025529)
chr6 (178-256)||(12627534-12627612)
chr6 (178-272)||(17841530-17841624)
chr6 (178-236)||(33001266-33001324)
chr6 (180-273)||(7977770-7977863)
chr6 (202-275)||(8365446-8365519)
chr6 (202-275)||(10294166-10294239)
chr6 (178-274)||(16833332-16833428)
chr6 (178-277)||(7740665-7740764)
chr6 (138-273)||(9027163-9027286)
chr6 (202-273)||(9107299-9107370)
chr6 (178-273)||(13360313-13360407)
chr6 (202-273)||(16766756-16766827)
chr6 (208-275)||(17327588-17327655)
chr6 (178-273)||(24645505-24645600)
chr6 (180-274)||(6898220-6898314)
chr6 (178-212)||(7027266-7027300)
chr6 (224-270)||(8389411-8389457)
chr6 (218-275)||(12236723-12236780)
chr6 (178-223)||(19040376-19040421)
chr6 (203-271)||(5000557-5000625)
chr6 (184-228)||(30851630-30851674)
chr6 (178-229)||(31579211-31579260)
chr6 (225-273)||(34894968-34895016)
[»] chr3 (41 HSPs)
chr3 (121-273)||(18426917-18427068)
chr3 (178-276)||(40993272-40993370)
chr3 (178-278)||(55401099-55401199)
chr3 (119-273)||(27505212-27505370)
chr3 (202-276)||(41961576-41961650)
chr3 (180-273)||(20503491-20503584)
chr3 (178-273)||(35222962-35223057)
chr3 (178-271)||(25775533-25775624)
chr3 (178-272)||(8789489-8789585)
chr3 (202-275)||(14209172-14209245)
chr3 (201-273)||(25074841-25074914)
chr3 (222-275)||(40052380-40052433)
chr3 (218-275)||(49651714-49651771)
chr3 (178-242)||(3631708-3631772)
chr3 (178-242)||(10954976-10955040)
chr3 (178-273)||(11252002-11252095)
chr3 (208-272)||(14216957-14217021)
chr3 (208-272)||(14223086-14223150)
chr3 (178-269)||(25093526-25093617)
chr3 (219-273)||(17276792-17276846)
chr3 (202-271)||(4987222-4987291)
chr3 (121-170)||(23870601-23870650)
chr3 (178-243)||(45451577-45451642)
chr3 (178-271)||(28918025-28918120)
chr3 (182-271)||(29508472-29508567)
chr3 (178-233)||(2941582-2941637)
chr3 (178-229)||(3865698-3865749)
chr3 (178-273)||(13845465-13845560)
chr3 (182-273)||(23657767-23657858)
chr3 (202-273)||(25064966-25065037)
chr3 (178-212)||(7928474-7928508)
chr3 (219-273)||(8101892-8101946)
chr3 (223-273)||(11610578-11610628)
chr3 (219-273)||(34185052-34185106)
chr3 (218-275)||(52369851-52369908)
chr3 (182-274)||(7171529-7171621)
chr3 (233-273)||(8903514-8903554)
chr3 (202-242)||(14832158-14832198)
chr3 (121-149)||(15796381-15796409)
chr3 (208-268)||(16192667-16192727)
chr3 (228-272)||(25211604-25211648)
[»] chr5 (22 HSPs)
chr5 (121-273)||(42893328-42893479)
chr5 (178-275)||(43564905-43565002)
chr5 (178-271)||(21190998-21191091)
chr5 (178-273)||(21576685-21576780)
chr5 (178-271)||(30502330-30502423)
chr5 (178-271)||(30542673-30542766)
chr5 (179-274)||(14873542-14873642)
chr5 (183-260)||(26312798-26312875)
chr5 (181-269)||(30098982-30099070)
chr5 (178-275)||(28588612-28588709)
chr5 (202-242)||(21542089-21542129)
chr5 (202-273)||(7677764-7677835)
chr5 (202-273)||(32766872-32766943)
chr5 (199-270)||(39268541-39268612)
chr5 (202-273)||(39698600-39698671)
chr5 (180-274)||(27932261-27932355)
chr5 (225-275)||(38464311-38464361)
chr5 (208-273)||(30098391-30098456)
chr5 (182-275)||(32630673-32630766)
chr5 (225-273)||(19820328-19820376)
chr5 (202-242)||(21522809-21522849)
chr5 (202-242)||(21533375-21533415)
[»] chr7 (29 HSPs)
chr7 (178-273)||(598232-598327)
chr7 (178-272)||(32287404-32287498)
chr7 (180-273)||(21880178-21880271)
chr7 (178-274)||(15680833-15680929)
chr7 (178-274)||(1401049-1401143)
chr7 (208-275)||(5409769-5409836)
chr7 (180-279)||(5835273-5835372)
chr7 (202-272)||(32308179-32308249)
chr7 (178-275)||(33994236-33994333)
chr7 (182-273)||(21864836-21864927)
chr7 (181-272)||(22484052-22484143)
chr7 (202-273)||(24339701-24339772)
chr7 (178-272)||(20549815-20549909)
chr7 (208-273)||(32093954-32094020)
chr7 (201-273)||(7133212-7133285)
chr7 (178-223)||(9482958-9483003)
chr7 (208-273)||(43027404-43027469)
chr7 (178-250)||(27093376-27093448)
chr7 (178-250)||(27184853-27184925)
chr7 (220-275)||(9778571-9778626)
chr7 (178-273)||(18212973-18213068)
chr7 (178-273)||(42720830-42720925)
chr7 (178-212)||(640137-640171)
chr7 (219-273)||(17852065-17852119)
chr7 (178-212)||(22602711-22602745)
chr7 (202-271)||(26033392-26033461)
chr7 (122-170)||(20545278-20545326)
chr7 (185-273)||(24105709-24105797)
chr7 (178-242)||(39138468-39138532)
[»] scaffold0652 (1 HSPs)
scaffold0652 (178-272)||(403-497)
[»] chr2 (30 HSPs)
chr2 (178-271)||(2438661-2438754)
chr2 (180-273)||(18840953-18841046)
chr2 (178-272)||(28596493-28596587)
chr2 (178-273)||(30404790-30404885)
chr2 (184-274)||(15972903-15972993)
chr2 (178-242)||(5367216-5367280)
chr2 (178-273)||(37559001-37559096)
chr2 (180-274)||(34993921-34994015)
chr2 (202-275)||(37419802-37419875)
chr2 (178-234)||(20242706-20242762)
chr2 (202-273)||(35056927-35056998)
chr2 (178-273)||(38117099-38117194)
chr2 (203-273)||(26769571-26769641)
chr2 (178-264)||(29176442-29176528)
chr2 (220-273)||(42511322-42511375)
chr2 (178-242)||(5040758-5040822)
chr2 (201-273)||(21782744-21782816)
chr2 (178-250)||(31808101-31808173)
chr2 (178-242)||(37411215-37411279)
chr2 (178-273)||(24009320-24009414)
chr2 (202-272)||(5891715-5891785)
chr2 (207-273)||(11223793-11223858)
chr2 (219-273)||(19980740-19980794)
chr2 (120-170)||(27084229-27084279)
chr2 (224-273)||(24975255-24975304)
chr2 (116-149)||(27447088-27447121)
chr2 (178-242)||(41843465-41843534)
chr2 (178-210)||(23718050-23718082)
chr2 (178-210)||(24105722-24105754)
chr2 (184-275)||(37497150-37497242)
[»] scaffold0050 (1 HSPs)
scaffold0050 (180-270)||(70304-70394)
[»] chr8 (34 HSPs)
chr8 (178-271)||(3025575-3025668)
chr8 (128-275)||(5813567-5813713)
chr8 (202-275)||(29510231-29510304)
chr8 (178-242)||(20679366-20679430)
chr8 (186-241)||(926760-926815)
chr8 (178-273)||(14134723-14134818)
chr8 (202-273)||(22652035-22652106)
chr8 (179-250)||(33405347-33405418)
chr8 (180-273)||(24413499-24413592)
chr8 (178-275)||(40332215-40332312)
chr8 (202-273)||(15816058-15816129)
chr8 (224-275)||(27213595-27213646)
chr8 (202-273)||(29447503-29447574)
chr8 (178-273)||(36450694-36450789)
chr8 (191-265)||(126295-126369)
chr8 (178-275)||(18407743-18407840)
chr8 (178-267)||(38079023-38079112)
chr8 (178-242)||(31557020-31557084)
chr8 (200-275)||(949203-949278)
chr8 (178-273)||(3951476-3951571)
chr8 (119-150)||(4298965-4298996)
chr8 (178-212)||(4786339-4786373)
chr8 (178-260)||(8293849-8293931)
chr8 (208-274)||(8343381-8343447)
chr8 (178-212)||(8847280-8847314)
chr8 (178-212)||(11927087-11927121)
chr8 (180-230)||(22596020-22596070)
chr8 (178-212)||(26902176-26902210)
chr8 (178-273)||(37283755-37283845)
chr8 (178-272)||(43737752-43737846)
chr8 (178-231)||(9414857-9414910)
chr8 (224-273)||(40064032-40064081)
chr8 (178-242)||(20873093-20873157)
chr8 (219-275)||(22197669-22197725)
[»] scaffold0003 (2 HSPs)
scaffold0003 (202-273)||(241653-241724)
scaffold0003 (223-275)||(236912-236964)
[»] scaffold0053 (1 HSPs)
scaffold0053 (189-273)||(8833-8917)
[»] scaffold0019 (1 HSPs)
scaffold0019 (202-275)||(71784-71857)
[»] scaffold0361 (1 HSPs)
scaffold0361 (122-273)||(14498-14646)
[»] scaffold0793 (1 HSPs)
scaffold0793 (178-273)||(4821-4918)
[»] scaffold0083 (1 HSPs)
scaffold0083 (180-241)||(45502-45563)
[»] scaffold0004 (1 HSPs)
scaffold0004 (121-170)||(92775-92824)
[»] scaffold0123 (1 HSPs)
scaffold0123 (202-273)||(44454-44525)
[»] scaffold0020 (1 HSPs)
scaffold0020 (223-273)||(135263-135313)
[»] scaffold0022 (1 HSPs)
scaffold0022 (182-235)||(90871-90924)
[»] scaffold0136 (1 HSPs)
scaffold0136 (121-149)||(3941-3969)
[»] scaffold0044 (1 HSPs)
scaffold0044 (202-242)||(53239-53279)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 40 - 448
Target Start/End: Complemental strand, 22235063 - 22234644
Alignment:
Q  40 tcatcattctccttgttggcctgttaaaataaacatgaatttaagcaaaaccaaaatatgttacatgaattcagtaaagacctatgaagcacggatatgg 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22235063 tcatcattctccttgttggcctgttaaaataaacatgaatttaagcaaaaccaaaatatgttacatgaattcagtaaagacctatgaagcacggatacgg 22234964  T
Q  140 acacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtc-----------tgacgcgacacgtgtc 228  Q
    ||||||||||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||           |||| |||||||||||    
T  22234963 acacggacacgccgacaccgctaaaaatttgaaaaaaatcacataattcagtgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtc 22234864  T
Q  229 cgacaccgggacacagctaatctgagaagtgttcgtgcttcataggtaaacactaatagttaattcaaagagtataattgagtacttacaagtagttgga 328  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22234863 cgacaccaggacacagctaatccgagaagtgttcgtgcttcataggtaaacactaatagttaattcaaagagtataattgagtacttacaagtagttgga 22234764  T
Q  329 cattgacaaccctgcaaaagatctgaggctgaagatcatagtttggtatctccaattgcttaaaaggagaaaaagaagcaaattgtaccaagtgacattg 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  22234763 cattgacaaccctgcaaaagatctgaggctgaagatcatagtttggtatctccaattgcttaaaaggagaaaaagaagcaaattgttccaagtgaccttg 22234664  T
Q  429 tggaaaatataccacaacat 448  Q
    ||||||||| ||||||||||    
T  22234663 tggaaaatacaccacaacat 22234644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 23293021 - 23292926
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||| |||||  | ||||||||||| ||| |||||||||||||||||||||||||  |||||| ||| ||||| ||||||||||||    
T  23293021 tcacataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 35161060 - 35161157
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||||||||||||||| || || || | ||| ||| |||||||||||||||||||| ||||| |||||| || |||||| ||||||||||||||    
T  35161060 tcacataattcagtgtaattataagtatcagagtcggacacgacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcataggt 35161157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 8423753 - 8423658
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||||||| ||  |||||||||| ||| |||||  ||||||||||||||||||  |||||| ||||||||| ||||| ||||||    
T  8423753 tcacataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatag 8423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 35158020 - 35157925
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||| ||||||||| || ||||||||||||||| |||||| ||||| ||||||| ||||   ||||| ||||||||| ||||||||||||    
T  35158020 tcacataatttagtgtaattataagtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttcatag 35157925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 34306828 - 34306744
Alignment:
Q  189 agtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||  | ||||||||||| ||| ||||||||||||||||||| |||||  |||||||||| | ||||||||||||||||    
T  34306828 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcatag 34306744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 12895309 - 12895214
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||  |||||||| || ||||||||||| ||| ||||| || ||||||| ||||||||  |||||| ||| ||||||||||||||||||    
T  12895309 tcacataattttgtgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 2362008 - 2361915
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||| |||||||||  | ||||||||||| ||| |||| |||||| ||||||| |||||| |||||||||  ||||| ||||||||||||    
T  2362008 acataatttagtgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgcttcatag 2361915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 19482743 - 19482800
Alignment:
Q  218 cgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||||    
T  19482743 cgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcataggt 19482800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 49431050 - 49431114
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    ||||||||||||||||||||  | ||||||||||| ||| |||||||||||| ||||||||||||    
T  49431050 tcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacac 49431114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 36509127 - 36509032
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||  ||||||||| |||||||||| ||| ||||||||||||||| || ||| ||||||   ||||| ||||||| ||| ||||||||||    
T  36509127 tcacataatcaagtgtaattatatgtgtcggcgtcggacgcgacacgtgtctgataccaggacacgtttaatccgagaagtattcatgcttcatag 36509032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 40179671 - 40179576
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||||||| |||| ||||||||| ||| |||||| ||| |||||||  |||||  |||||| ||||| | ||||||||| ||||    
T  40179671 tcacataattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatccgagaattattcgtgcttgatag 40179576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 28964283 - 28964181
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggtaa 277  Q
    ||||||||||||||||||||  | ||||| ||||| ||| |||||| | |||||||| |||||||  |||||| ||| ||||| | |||||||||| |||    
T  28964283 tcacataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatagttaa 28964184  T
Q  278 aca 280  Q
    |||    
T  28964183 aca 28964181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 3947766 - 3947702
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||| ||| |||||||||||||||||| ||||||| |||||| ||| ||||| |||||||||||    
T  3947766 gtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 29205468 - 29205532
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    ||||||||||||||||||||  | ||||||||||  ||| |||||| ||||||||||||||||||    
T  29205468 tcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacac 29205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 54580058 - 54580006
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccg 230  Q
    |||||||||||||||||||| || ||||||||||| ||| |||||||||||||    
T  54580058 tcacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccg 54580006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 12797373 - 12797282
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttc 269  Q
    ||||||||||||||||||||  | ||||||||||| ||| ||| || |||| ||||||||||||   |||||| ||| | ||||||||||||    
T  12797373 tcacataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtctgacaccgggacaagtctaatccgaggaatgttcgtgcttc 12797282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 30982878 - 30982803
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggtaa 277  Q
    ||||||||||| ||| |||||||||||||||||||||||||  ||||||  |  ||||| ||||||||||| ||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcatatgtaa 30982803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 715642 - 715545
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctg--acgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||||  | |||| |||||||   || |||||| |||||||||| |||||||  |||||| ||| ||||| ||||||||||||    
T  715642 tcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 752968 - 752871
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctg--acgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||||  | |||| |||||||   || |||||| |||||||||| |||||||  |||||| ||| ||||| ||||||||||||    
T  752968 tcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 3712504 - 3712458
Alignment:
Q  222 acgtgtccgacaccgggacacagctaatctgagaagtgttcgtgctt 268  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||    
T  3712504 acgtgtccgacaccgggacacggctaatctgaggagtgtccgtgctt 3712458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 53381602 - 53381528
Alignment:
Q  202 gtgtcggtgtctgacgc-gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||| ||| | ||| ||| ||||||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  53381602 gtgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggt 53381528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 9996864 - 9996941
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgaga 255  Q
    |||||||||||||| ||||| ||||| |||||||| |||   ||||||||||||||| || ||||| |||||| ||||    
T  9996864 tcacataattcagtataattatatgtctcggtgtcagacataacacgtgtccgacactggaacacacctaatcggaga 9996941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 19312410 - 19312463
Alignment:
Q  218 cgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    ||||||||||||||||||| |||||  |||||||||||||||| |||| |||||    
T  19312410 cgacacgtgtccgacaccgagacacgtctaatctgagaagtgtccgtgtttcat 19312463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 24613700 - 24613627
Alignment:
Q  203 tgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggta 276  Q
    |||||||||| ||| ||||||||||| |||||| ||||||  ||||||  || ||||| |||||||||||||||    
T  24613700 tgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcataggta 24613627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 14465070 - 14465006
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||| ||| |||||||||| |||||| |||||||  |||||||||| ||||| |||||||||||    
T  14465070 gtgtcagacacgacacgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttcata 14465006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 16886633 - 16886726
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||| |||   |||||| |||| | ||| | ||| |||||||||||||| |||| |||||||| |||||||| ||||||| ||||    
T  16886633 tcacataattcagtgaaata--atgtgttggtgacagacactacatgtgtccgacaccggaacacggctaatctcagaagtgtccgtgcttgatag 16886726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 24343560 - 24343632
Alignment:
Q  202 gtgtcggtgtctgacgc-gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| ||| | ||| ||||||||||||||||||||  ||| |||||| ||||| ||||||||||||    
T  24343560 gtgtcggtgtccgacaccgacgcgtgtccgacaccgggacacgcctattctgaggagtgtccgtgcttcatag 24343632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 18513224 - 18513173
Alignment:
Q  224 gtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||||||| ||||||  |||||||||| ||||| ||||||||||||||    
T  18513224 gtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcataggt 18513173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 29205532 - 29205587
Alignment:
Q  218 cgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||| |||||||||| |||||||  |||||| ||| ||||||||||||||||||    
T  29205532 cgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatag 29205587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 37203324 - 37203371
Alignment:
Q  226 gtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  37203324 gtccgacaccgggacacgtctaatccgagaagtgtccgtgcttcatag 37203371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 10133756 - 10133830
Alignment:
Q  202 gtgtcggtgtctgacgc-gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||| ||| | ||| ||||||||||||| ||||||| |||||||||| |  |||| ||||||||||||    
T  10133756 gtgtcggtgtcagacactgacgcgtgtccgacaccaggacacacctaatctgaggaacgttcatgcttcataggt 10133830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 11596345 - 11596295
Alignment:
Q  225 tgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||| ||||||||  |||||||||| ||||| ||||||||||||||    
T  11596345 tgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcataggt 11596295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 16073421 - 16073515
Alignment:
Q  181 cataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||||||||||||  | ||||||||||| ||| ||| || ||||||||||   |||||  |||||| ||| ||||| | ||||||||||||    
T  16073421 cataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcataggt 16073515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 37203220 - 37203250
Alignment:
Q  119 acctatgaagcacggatatggacacggacac 149  Q
    |||||||||||||||||||||||||||||||    
T  37203220 acctatgaagcacggatatggacacggacac 37203250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 4157173 - 4157266
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    |||||||||| |||| ||||  | ||||||||||| ||| |||||| |||||||||||| || ||| |||||  ||| |||||  |||||||||    
T  4157173 tcacataatttagtgcaattacaagtgtcggtgtcggacacgacacatgtccgacaccgagaaacacctaattcgaggagtgtctgtgcttcat 4157266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 28000725 - 28000672
Alignment:
Q  218 cgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    ||||||||||| ||||||| |||||| |||||||||  ||||| ||||||||||    
T  28000725 cgacacgtgtctgacaccgagacacacctaatctgatgagtgtccgtgcttcat 28000672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 8402773 - 8402721
Alignment:
Q  182 ataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacac 234  Q
    |||||||||||||||| ||||| || ||||| ||| |||||| ||||||||||    
T  8402773 ataattcagtgtaattatatgtctcagtgtcagacacgacacttgtccgacac 8402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 21945529 - 21945585
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccg 236  Q
    ||||||||||||||||||  | ||||||||||| |||  ||||| ||||||||||||    
T  21945529 acataattcagtgtaattacaagtgtcggtgtcggacatgacacatgtccgacaccg 21945585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 40784029 - 40784073
Alignment:
Q  230 gacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    |||||||||||||| |||||| ||| ||||| |||||||||||||    
T  40784029 gacaccgggacacacctaatccgaggagtgtccgtgcttcatagg 40784073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 121 - 271
Target Start/End: Complemental strand, 29163477 - 29163323
Alignment:
Q  121 ctatgaagcacggatatggacacg-----gacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtctga 215  Q
    |||||||||||||||||||||||      |||||||||| ||||||||||||||        |||||||||||| | ||||| |||||||||||||| ||    
T  29163477 ctatgaagcacggatatggacacaacacagacacgccgacaccgctaaaaattt-aggaaaatcacataattcaatttaattatatgtgtcggtgtcgga 29163379  T
Q  216 cgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    | ||||||||| | ||||||||||||| ||||||| ||||||||||||||||||||    
T  29163378 cacgacacgtgcctgacaccgggacacggctaatcagagaagtgttcgtgcttcat 29163323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 5898301 - 5898204
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||||||||||||||| |||| ||||||||| ||| |||||||||||| ||||||||||||  |||||| ||| ||||| ||||||| ||||||    
T  5898301 tcacataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctttataggt 5898204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 1815281 - 1815377
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    ||||||||||||||||||||  | ||||||||||| ||| |||||| ||||||||||||||||||  |||||||||| ||||  |||| ||||||||    
T  1815281 tcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcatagg 1815377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 12918969 - 12919063
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    |||||||||||| ||| ||| ||||||| ||| || ||| ||||||||||| ||||| ||||||| ||| ||| |||||||||||||||||||||    
T  12918969 tcacataattcaatgtgattatatgtgttggtatcggacacgacacgtgtctgacacggggacacggcttatccgagaagtgttcgtgcttcata 12919063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 37598861 - 37598951
Alignment:
Q  184 aattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    |||||||||||||| || ||||||||||| ||| ||||||||||||||||  |||||||  |||||| ||| ||||| |||||||||||||    
T  37598861 aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatagg 37598951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 51410049 - 51410146
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||||||||||||  | ||||||||||| ||| |||||||| |||||||||| |||||  ||||||  || ||| ||||||||||||||||    
T  51410049 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcataggt 51410146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 276
Target Start/End: Complemental strand, 2896195 - 2896058
Alignment:
Q  138 ggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgg 237  Q
    |||||| |||||||||| |||||||| ||||||       |||||||||||||||||  | ||| |||||||||| ||| ||||| |||||||| |||||    
T  2896195 ggacactgacacgccgacaccgctaataatttgagaaaa-tcacataattcagtgtagctatatatgtcggtgtcagacacgacatgtgtccgagaccgg 2896097  T
Q  238 gacacagctaatctgagaagtgttcgtgcttcataggta 276  Q
    |||||| ||||||  |||||||| | || ||||||||||    
T  2896096 gacacacctaatccaagaagtgtccatgtttcataggta 2896058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 40258968 - 40258874
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||||||||||||||||||  | ||||||||||| ||| |||||| ||||||||||| ||||||  |||||| ||| ||||| | |||||||||    
T  40258968 tcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 9828103 - 9828176
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||| ||||| ||| |||||||||||||||||||||||||  |||||| ||| ||||| ||||||||||||||    
T  9828103 gtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcataggt 9828176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 18190141 - 18190048
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||  | |||||| |||| ||| | |||||||||||||||||||||||| |||||| ||| |||||  | |||||||||    
T  18190141 acataattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtccgacaccgggacacacctaatccgaggagtgtatgcgcttcatag 18190048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 40181895 - 40181976
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtg 259  Q
    |||||||||||||||||||| ||||| |||||||| ||| | |||||||||| ||||||||||||  |||||| ||| ||||    
T  40181895 tcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccgaggagtg 40181976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 39953239 - 39953147
Alignment:
Q  119 acctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||| |||||        |||||||||| ||||||||| ||||||||||||||    
T  39953239 acctatgaagaacggatatggacacggaaacgccgacaccgctaataattt-tagaaaatcacataatttagtgtaattgtatgtgtcggtgtc 39953147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 17778615 - 17778670
Alignment:
Q  216 cgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||||||||    
T  17778615 cgcgacacgtgtccgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 18337353 - 18337448
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||||  | ||||||||||| ||| | ||||||||||||||| ||||||   || ||| ||| ||||| ||||||||||||    
T  18337353 tcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 22515922 - 22515827
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||| |||||||||  | ||||||||||| ||| |||||| | |||||||||| |||||  |||||| ||| ||||| ||||||||||||    
T  22515922 tcacataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 36878437 - 36878541
Alignment:
Q  129 cacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtc 228  Q
    |||||| || ||||| |||||||||| |||||||| ||||||       |||||||||||||||||||| || ||||||||||||||| ||| || ||||    
T  36878437 cacggacatagacactgacacgccgacaccgctaataatttgagaaaa-tcacataattcagtgtaattataggtgtcggtgtctgacacgaaacatgtc 36878535  T
Q  229 cgacac 234  Q
    ||||||    
T  36878536 cgacac 36878541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 1486744 - 1486646
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtct-----gacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    |||||||||||||||||||| || |||||||||||      ||| |||||||||||||||||||||||||  |||||| ||| |||||  |||||||||    
T  1486744 tcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 40917808 - 40917881
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||  ||| |||||||||||||||||||||||||  |||||| ||| | ||| ||||||||||||||    
T  40917808 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcataggt 40917881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 42359484 - 42359391
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    ||||| ||||||||||||||  | ||||||||||| |||  |||  |||||||||||||||||||  |||||| ||| ||||| ||||||||||    
T  42359484 tcacaaaattcagtgtaattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 6427539 - 6427595
Alignment:
Q  218 cgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    |||||||||||||||||||||||||  |||||||||  ||||| |||||||||||||    
T  6427539 cgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatagg 6427595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 32461465 - 32461393
Alignment:
Q  201 tgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||| ||| ||||||||||| ||||| |||||||  ||||||  |||||||| ||||||||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 18556452 - 18556385
Alignment:
Q  206 cggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||| ||| |||||||| |||||||| |||||||  |||||| ||||||||| ||||||||||||    
T  18556452 cggtgtcagacccgacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 38078696 - 38078601
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||| |||||||  | ||||||||||| ||| |||||| ||| | ||||| ||||||  |||||| ||| ||| ||||||||||||||    
T  38078696 tcacataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcatag 38078601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 46348414 - 46348323
Alignment:
Q  182 ataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||| |||||||||  | ||||||||||| ||| ||||||||||||||||||| |||||  || ||| |||  |||| ||||||||||||    
T  46348414 ataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttcatag 46348323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 1209821 - 1209867
Alignment:
Q  222 acgtgtccgacaccgggacacagctaatctgagaagtgttcgtgctt 268  Q
    |||||||||||||| ||||||| |||||| |||||||||||||||||    
T  1209821 acgtgtccgacaccaggacacacctaatccgagaagtgttcgtgctt 1209867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 9690303 - 9690210
Alignment:
Q  184 aattcagtgtaattctatgtgtcggtgtctgacgc-gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggta 276  Q
    |||||||||||||  |||||||||| ||| | | | ||||||||||||||||||||||||  |||||| |   |||||| ||||||||||||||    
T  9690303 aattcagtgtaatcatatgtgtcggcgtcggccactgacacgtgtccgacaccgggacacgcctaatccggagagtgtttgtgcttcataggta 9690210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 52903277 - 52903365
Alignment:
Q  182 ataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||| |||||||||||||| |||   ||  ||||||||||||||||||| ||| ||  ||  ||||| ||||||||||||    
T  52903277 ataattcagtgtaattatatgtgtcggtgtcggac---acgtgtgtccgacaccgggacacggcttattcgaagagtgtccgtgcttcatag 52903365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 46940798 - 46940747
Alignment:
Q  223 cgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    ||||||||||||||| ||||  |||||| ||| |||||||||||||||||||    
T  46940798 cgtgtccgacaccggaacacgcctaatccgaggagtgttcgtgcttcatagg 46940747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 47989556 - 47989627
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| ||| |||||| |||| |||| ||||||||  |||||| ||| ||||| ||||||||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 10233277 - 10233374
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc--tgacgc-gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    |||||||||||||||||||| |||||||| ||||   || ||  | || |||||||||||| ||||||| |||||| ||| ||||| |||||||||||    
T  10233277 tcacataattcagtgtaattatatgtgtctgtgttggtgtcggtgtcatgtgtccgacaccaggacacacctaatcagaggagtgtccgtgcttcata 10233374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 17705621 - 17705576
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacg 224  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||    
T  17705621 tcacataattcagtgtaattatatgtgtc-gtgtcggacgcgacacg 17705576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 20157385 - 20157283
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtct-----gacgc-gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    |||||||||||||||||||  ||||||||||||||      ||| | ||| |||||||||||||| |||||| ||||| |||| ||| | ||||||||||    
T  20157385 tcacataattcagtgtaatcatatgtgtcggtgtcgtgtccgacaccgacgcgtgtccgacaccgagacacacctaatttgaggagtatccgtgcttcat 20157286  T
Q  272 agg 274  Q
    |||    
T  20157285 agg 20157283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 23219654 - 23219608
Alignment:
Q  222 acgtgtccgacaccgggacacagctaatctgagaagtgttcgtgctt 268  Q
    ||||||||||||||| |||||| |||||| |||||||||| ||||||    
T  23219654 acgtgtccgacaccgtgacacacctaatccgagaagtgtttgtgctt 23219608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 30749864 - 30749898
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  30749864 tcacataattcagtgtaattatatgtgtcggtgtc 30749898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 30771315 - 30771349
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  30771315 tcacataattcagtgtaattatatgtgtcggtgtc 30771349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 34371737 - 34371771
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  34371737 tcacataattcagtgtaattatatgtgtcggtgtc 34371771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 44482254 - 44482288
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  44482254 tcacataattcagtgtaattatatgtgtcggtgtc 44482288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 1864915 - 1864882
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgt 211  Q
    |||||||||||||||||||| |||||||||||||    
T  1864915 tcacataattcagtgtaattatatgtgtcggtgt 1864882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 5944360 - 5944413
Alignment:
Q  220 acacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||| ||||||||||||||| ||  |||||| ||| ||||||||||||||||||    
T  5944360 acacatgtccgacaccgggatacgcctaatccgaggagtgttcgtgcttcatag 5944413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 13997907 - 13997940
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgt 211  Q
    |||||||||||||||||||| |||||||||||||    
T  13997907 tcacataattcagtgtaattatatgtgtcggtgt 13997940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 19562608 - 19562556
Alignment:
Q  220 acacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||| |||||||| |||||| ||| |||| |||||||||||||    
T  19562608 acacgtgtccgacacagggacacacctaatccgaggagtg-tcgtgcttcatag 19562556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 23636082 - 23636050
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||| ||||||||||||||    
T  23636082 acataattcagtgtaattgtatgtgtcggtgtc 23636050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 31694710 - 31694638
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    ||||||||||| ||| | |||| | | ||||||||| ||||  |||||||||| ||||| |||||||||||||    
T  31694710 gtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttcatagg 31694638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 43492529 - 43492465
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    |||| |||||| |||||||| | |||||||||||| ||| | |||| ||||||||||||| ||||    
T  43492529 tcacgtaattcggtgtaattatgtgtgtcggtgtcagacacaacacatgtccgacaccggcacac 43492465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 7378003 - 7378098
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||| ||||||| |||||||||||||| ||| ||||| |  |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  7378003 tcacataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttcatag 7378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 28152122 - 28152217
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||||  | ||||||||||| ||| ||||||||||||||||||||||||   |||||| ||| ||||||||||||||||||    
T  28152122 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 34595158 - 34595253
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||||  | ||||||||||| ||| ||||||||||| |||||||||||||| |||||| ||| ||||| ||||||||||||    
T  34595158 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 28715321 - 28715418
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggtaa 277  Q
    ||||||||||||||||||  | ||||||||||| ||| |||||||||| ||||||||||||||  |||||  ||||||||| ||||||||||||||||    
T  28715321 acataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcataggtaa 28715418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 32978933 - 32978842
Alignment:
Q  179 cacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttca 270  Q
    ||||||||| |||||||||  | ||||||||||| ||| |||||| ||||||||||||||||||  ||||||  || ||||| |||||||||    
T  32978933 cacataattaagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 7265684 - 7265569
Alignment:
Q  121 ctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtctgacgcga 220  Q
    |||||||||||| ||  |||||| |||||||| | |||||||| ||||||       |||||||||||||||||||| |||||||||||||| ||| | |    
T  7265684 ctatgaagcacgtattcggacactgacacgccaacaccgctaataatttgagaaaa-tcacataattcagtgtaattatatgtgtcggtgtcggacacaa 7265586  T
Q  221 cacgtgtccgacaccgg 237  Q
     || |||||||||||||    
T  7265585 tacatgtccgacaccgg 7265569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 8776963 - 8776906
Alignment:
Q  218 cgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||||||||||| |||||| |||||| ||| ||||| ||||||||||||||    
T  8776963 cgacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcataggt 8776906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 10339125 - 10339052
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||| ||| |||||| |||||||||| |||||||  |||||| ||| ||||| ||||||||||||||    
T  10339125 gtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcataggt 10339052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 9658903 - 9658967
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    |||||||||||||||||||| ||| |||||||||  ||| ||||||||||| |||||||| ||||    
T  9658903 tcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtctgacaccggaacac 9658967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 31959213 - 31959268
Alignment:
Q  217 gcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    |||||| |||||||||||||||||||| |||||| ||| ||||| |||||||||||    
T  31959213 gcgacatgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 276
Target Start/End: Original strand, 4877967 - 4878064
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggta 276  Q
    |||||||||| ||| |||||  | ||||||||||| ||| |||||| ||||||||| | ||||||  |||||| ||| ||||| |||||||||||||||    
T  4877967 tcacataattaagtataattacaagtgtcggtgtcggacacgacacatgtccgaca-caggacacgcctaatccgaggagtgtccgtgcttcataggta 4878064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 9025529 - 9025448
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttca 270  Q
    |||||||||||||||||||| ||||||||||||||           |||||||||||||||||||  |||||| ||||||||| |||||||||    
T  9025529 tcacataattcagtgtaattatatgtgtcggtgtc-----------gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 12627612 - 12627534
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaa 256  Q
    |||||||||||||||||||  ||||||||| |||| ||| | |||| |||||||||||| |||||  |||||| |||||    
T  12627612 tcacataattcagtgtaataatatgtgtcgatgtcggacaccacacatgtccgacaccgagacactcctaatccgagaa 12627534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 17841624 - 17841530
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    |||||||||| |||||||||  | ||| ||||||| ||| ||||| ||||||||||| | |||||  |||||| ||| ||||| |||||||||||    
T  17841624 tcacataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 33001324 - 33001266
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccg 236  Q
    |||||||||| | ||||||| |||||||||||||| ||| ||||||||||| |||||||    
T  33001324 tcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtctgacaccg 33001266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 7977863 - 7977770
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||  | ||||||||||| ||| | |||  ||||||||| ||  ||||  ||||||| || ||||||||||||||||||    
T  7977863 acataattcagtgtaattacaagtgtcggtgtcggacacaacatatgtccgacaacgaaacacgcctaatctaaggagtgttcgtgcttcatag 7977770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 8365519 - 8365446
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||| || ||| ||||||||||||||||| |||||||  |||||| ||| ||| | ||||||||||||||    
T  8365519 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcataggt 8365446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 10294166 - 10294239
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||| |||||| ||| ||||| |||||||| ||  |||||||||||||||||| |||||  |||||||||||||    
T  10294166 gtgttggtgtcggacacgacatgtgtccgaaactaggacacagctaatctgaggagtgtctgtgcttcataggt 10294239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 16833332 - 16833428
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    ||||||| ||||||||||||  | ||||||||||  ||| ||||||| |||||||||| ||||||| | |||| ||| |||||  || |||||||||    
T  16833332 tcacatacttcagtgtaattacaagtgtcggtgttagacacgacacgcgtccgacaccaggacacaccgaatccgaggagtgtctgtacttcatagg 16833428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 7740665 - 7740764
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggtaa 277  Q
    ||||| |||| ||||||||| |||||||| ||||| ||| ||||||||  |||| ||| ||||||  ||   ||||||||||| |||| |||||||||||    
T  7740665 tcacaaaattgagtgtaattatatgtgtcagtgtcggacacgacacgtacccgataccaggacacgcctgccctgagaagtgtccgtgtttcataggtaa 7740764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 9027163 - 9027286
Alignment:
Q  138 ggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgg 237  Q
    |||||| |||||||||| |||||||| ||||||       ||||||||||| |||||||| ||||||||||||||           ||||||||||||||    
T  9027163 ggacactgacacgccgacaccgctaataatttgagataa-tcacataattccgtgtaattatatgtgtcggtgtc-----------gtgtccgacaccgg 9027250  T
Q  238 gacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||| |||||||  || |||||| |||||||||||    
T  9027251 gacacggctaatccaaggagtgtttgtgcttcatag 9027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 9107370 - 9107299
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| ||| | ||  |||||||||||||||||||| |||||| ||| ||||  ||||||||||||    
T  9107370 gtgtcggtgtcggacacaacgtgtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcatag 9107299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 13360407 - 13360313
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||||||| ||||| |||||||| ||| | |||  |||||||||| | |||||  |||||| ||  ||||| ||||||||||||    
T  13360407 tcacataattcagtgtaattatatgtttcggtgtcagacacaaca-atgtccgacactgagacacgcctaatccgaagagtgtccgtgcttcatag 13360313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 16766756 - 16766827
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| ||| | |||||||||||||||||||||||  |||||| ||  | ||| ||||||||||||    
T  16766756 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttcatag 16766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 17327655 - 17327588
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||| ||| ||||||||||| ||||| |||||||  |||||| ||| ||||| ||||||||||||||    
T  17327655 gtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcataggt 17327588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 24645505 - 24645600
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||| || ||  | ||||||||||| ||| ||||||||||||||||||  |||||  |||||| ||  |||||  |||||||||||    
T  24645505 tcacataattcagtatagttacaagtgtcggtgtcagacacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcatag 24645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 6898314 - 6898220
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    |||||||| |||||||||  | ||||||||||| ||| |||  ||||||| ||||||  ||||  |||||| ||  |||||||||||||||||||    
T  6898314 acataattaagtgtaattacaagtgtcggtgtcggacacgaagcgtgtccaacaccgaaacacgcctaatccgatgagtgttcgtgcttcatagg 6898220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 7027266 - 7027300
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  7027266 tcacataattcagtgtaattatatgtgtcggtgtc 7027300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 8389457 - 8389411
Alignment:
Q  224 gtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttca 270  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||||||    
T  8389457 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 8389411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 12236723 - 12236780
Alignment:
Q  218 cgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||| ||| || |||||||||||  |||| ||||| ||||||||||||||||||||    
T  12236723 cgacacatgttcggcaccgggacacgcctaacctgaggagtgttcgtgcttcataggt 12236780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 19040376 - 19040421
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacac 223  Q
    |||||||||||||||||||| |||||||| ||||| ||| ||||||    
T  19040376 tcacataattcagtgtaattatatgtgtctgtgtcggacacgacac 19040421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 5000625 - 5000557
Alignment:
Q  203 tgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    |||||||||| ||| |||||| | ||||||||| ||||||  |||||| ||  ||||||||||||||||    
T  5000625 tgtcggtgtcagacacgacacatatccgacaccaggacacgtctaatccgaagagtgttcgtgcttcat 5000557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 30851630 - 30851674
Alignment:
Q  184 aattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtc 228  Q
    |||||| ||||||| |||||||||||||| ||| |||||||||||    
T  30851630 aattcaatgtaattatatgtgtcggtgtcggacacgacacgtgtc 30851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 31579260 - 31579211
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtcc 229  Q
    |||||||||||||||||||  |||||||||||||| ||| |||||| |||||    
T  31579260 tcacataattcagtgtaat--tatgtgtcggtgtcggacacgacacatgtcc 31579211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 34895016 - 34894968
Alignment:
Q  225 tgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||| |||||||| ||||| |||| ||||| ||||||||||||    
T  34895016 tgtccgacacagggacacacctaatatgaggagtgtccgtgcttcatag 34894968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 273
Target Start/End: Original strand, 18426917 - 18427068
Alignment:
Q  121 ctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtctgacgcga 220  Q
    ||||||||||| |||| ||||||||||||||||| ||| |||| |||||        ||||||||||| |||||||| ||| |||||||||| ||  |||    
T  18426917 ctatgaagcacagatacggacacggacacgccgacaccactaataattt-caaaaaatcacataattcggtgtaattatatatgtcggtgtcggatacga 18427015  T
Q  221 cacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||| |||||||||||| |||||||||| ||||| |||| |||||||    
T  18427016 cacgtgtccggcaccgggacacacctaatctgaggagtgtccgtgtttcatag 18427068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 40993370 - 40993272
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggta 276  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||  |||||| ||| ||||| | |||||||||||||    
T  40993370 tcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcataggta 40993272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 278
Target Start/End: Original strand, 55401099 - 55401199
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggtaa 277  Q
    |||||||||| |||||||||  | ||||||||||| ||| ||||||||||||||||||| |||||  |||||| ||| ||||| |||||||||||| |||    
T  55401099 tcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatagctaa 55401198  T
Q  278 a 278  Q
    |    
T  55401199 a 55401199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 273
Target Start/End: Original strand, 27505212 - 27505370
Alignment:
Q  119 acctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtc-----t 213  Q
    |||||||||||||||||| ||| ||||||| ||||| || ||||| |||||        |||||||||| |||||||||  | |||||||||||     |    
T  27505212 acctatgaagcacggatacggatacggacaagccgacacagctaataattt-ttaaaaatcacataattaagtgtaattacaagtgtcggtgtcgtgtct 27505310  T
Q  214 gacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||| ||||||||||||||||||||||||   |||||| ||| ||||| ||||||||||||    
T  27505311 gacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 41961650 - 41961576
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggta 276  Q
    |||||||| || ||| ||||||||||||||||| |||||||  |||||| ||||||||| |||||||||||||||    
T  41961650 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcataggta 41961576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 20503491 - 20503584
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||  | ||||||||||  ||| |||||| |||| |||||||||||||  |||||| ||| ||||| ||||||||||||    
T  20503491 acataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 35222962 - 35223057
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||| ||||||| |||||||||||||| |||  |||||||||| ||||| |||||||   | ||| ||| ||||| ||||||||||||    
T  35222962 tcacataattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcatag 35223057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 25775533 - 25775624
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    ||||||||||||||||||||  | ||||||||||| ||| || |  |||||||||||| ||||||  |||||| ||| ||||||||||||||||    
T  25775533 tcacataattcagtgtaattacaagtgtcggtgtcggacacgtc--gtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 8789585 - 8789489
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcg--acacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||||||||| |||||||| |||||||||||||| ||| ||  |||| |||| ||||||| |||||  |||||| ||| ||||| |||||||||||    
T  8789585 tcacataattccgtgtaattatatgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 14209172 - 14209245
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||| ||| |||||||||| ||||| ||||| ||| ||||||  |||||||| ||||||||||||||    
T  14209172 gtgtcggtgtcggacacgacacgtgtacgacatcgggatacacctaatccaagaagtgtccgtgcttcataggt 14209245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 25074841 - 25074914
Alignment:
Q  201 tgtgtcggtgtctgacgcga-cacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||| | | | |||||||||||| |||||||| |||||| ||| ||||||||||||||||||    
T  25074841 tgtgtcggtgtctgacaccaacgcgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 40052380 - 40052433
Alignment:
Q  222 acgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||||||||||||||||  |||||| ||| ||||||||||||||||||||    
T  40052380 acgtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcataggt 40052433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 49651771 - 49651714
Alignment:
Q  218 cgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||| | ||||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  49651771 cgacacatatccgacaccgggacacacctaatccgagaagtgtccgtgcttcataggt 49651714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 3631708 - 3631772
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    |||||||||||||||||||| |||||| | ||||| ||| |||||| ||||||||||| ||||||    
T  3631708 tcacataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacac 3631772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 10954976 - 10955040
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    |||||||||||||||||||   | ||||||||||| ||| ||||||||||||||||| |||||||    
T  10954976 tcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacactgggacac 10955040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 11252002 - 11252095
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||||  ||||||||||||| ||| | ||||||||||| || ||| ||||  |||||| ||| |||||  |||||||||||    
T  11252002 tcacataattcagtgtaatt--atgtgtcggtgtcagacacaacacgtgtccggcatcggaacacgcctaatccgaggagtgtctgtgcttcatag 11252095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 14216957 - 14217021
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||| ||| |||||||||| |||||| |||||||| |||||| ||||||||| |||||||||||    
T  14216957 gtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 14223086 - 14223150
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||| ||| |||||||||| |||||| |||||||| |||||| ||||||||| |||||||||||    
T  14223086 gtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 25093526 - 25093617
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttc 269  Q
    ||||| |||||||||||||| |||||||||||||| ||| | |||| |||||||||| |   |||  |||||||||  ||||||||||||||    
T  25093526 tcacacaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacactgaagcacttctaatctgaagagtgttcgtgcttc 25093617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 17276792 - 17276846
Alignment:
Q  219 gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||||| ||| || |||||| ||||||||| ||||||||||||    
T  17276792 gacacgtgtccgacaccgagacgcacctaatccgagaagtgtccgtgcttcatag 17276846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 4987291 - 4987222
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    ||||||||||  ||| |||||||||||||||||||||||||  |||||| ||| ||||| ||| ||||||    
T  4987291 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 23870650 - 23870601
Alignment:
Q  121 ctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttg 170  Q
    |||||||||||||||| ||||||||||||| ||| |||||||| ||||||    
T  23870650 ctatgaagcacggatacggacacggacacgtcgacaccgctaataatttg 23870601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 45451577 - 45451642
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacaca 243  Q
    ||||||| |||||| ||||  |||||||||||||| ||| |||||| |||||||||||| ||||||    
T  45451577 tcacatacttcagtataataatatgtgtcggtgtcggacacgacacatgtccgacaccgagacaca 45451642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 28918025 - 28918120
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc--tgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    ||||||||||||||||||||  | |||||||||||   ||| ||||||||||||||||| |||||||  ||||||  || ||||| | ||||||||    
T  28918025 tcacataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatccaaggagtgtccctgcttcat 28918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 29508472 - 29508567
Alignment:
Q  182 ataattcagtgtaattctatgtgtcg------gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    |||||||||||||||| |||||||||      ||||| ||| ||||||  |||||||||||||||||  ||||||  |||||||| ||||||||||    
T  29508472 ataattcagtgtaattatatgtgtcgatgttggtgtcggacacgacacacgtccgacaccgggacacgtctaatccaagaagtgtccgtgcttcat 29508567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 2941582 - 2941637
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgaca 233  Q
    ||||| ||| |||||||||| |||||||||||||| ||| ||||||||||| ||||    
T  2941582 tcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacacgtgtctgaca 2941637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 3865698 - 3865749
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtcc 229  Q
    |||||||||||||| |||||  | ||||||||||||||| ||||||||||||    
T  3865698 tcacataattcagtataattacaagtgtcggtgtctgacacgacacgtgtcc 3865749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 13845560 - 13845465
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||| ||| |||||||||| |||||||||||||| ||| ||| ||||||| ||||| | |||||  || |||  || ||||| ||||||||||||    
T  13845560 tcacaaaatgcagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttcatag 13845465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 23657767 - 23657858
Alignment:
Q  182 ataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||| ||  | |||||||| |||  ||||  ||||||| ||||||||||| |||||| || |||||| ||| ||||||||    
T  23657767 ataattcagtgtaattataaatatcggtgtcggacatgacatttgtccgataccgggacacacctaatccgaaaagtgtccgtacttcatag 23657858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 25064966 - 25065037
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||| |||||| ||| ||||||||||| ||||||||||||| | | ||| ||| |||||||||||| |||||    
T  25064966 gtgttggtgtcggacacgacacgtgtctgacaccgggacacggtttatccgaggagtgttcgtgctccatag 25065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 7928474 - 7928508
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  7928474 tcacataattcagtgtaattatatgtgtcggtgtc 7928508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 8101946 - 8101892
Alignment:
Q  219 gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||| ||||| || ||||  |||||||||| ||||||||||||||||||    
T  8101946 gacacgtgtcggacactggtacacgtctaatctgaggagtgttcgtgcttcatag 8101892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 11610578 - 11610628
Alignment:
Q  223 cgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| ||||||||  |||||||||| ||||| ||||||||||||    
T  11610578 cgtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11610628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 34185106 - 34185052
Alignment:
Q  219 gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||| |||||||||||||||||||  |||||| ||| ||||| ||||||||||||    
T  34185106 gacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 52369851 - 52369908
Alignment:
Q  218 cgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||| ||||||| ||||||||||||| ||| || ||| ||||| ||||||||||||||    
T  52369851 cgacgcgtgtccaacaccgggacacacctattccgaggagtgtccgtgcttcataggt 52369908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 7171529 - 7171621
Alignment:
Q  182 ataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    ||||||| ||||||||  | |||| |||||| ||| ||||||||||||||||||| |||||  ||||||  || |||||   |||||||||||    
T  7171529 ataattcggtgtaattacaagtgttggtgtcggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgtatatgcttcatagg 7171621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 8903514 - 8903554
Alignment:
Q  233 accgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| |||||| ||| ||||||||||||||||||    
T  8903514 accgggacacacctaatccgaggagtgttcgtgcttcatag 8903554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 14832158 - 14832198
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    |||||||| || ||| |||||||||||||||||||||||||    
T  14832158 gtgtcggtatcggacacgacacgtgtccgacaccgggacac 14832198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 15796409 - 15796381
Alignment:
Q  121 ctatgaagcacggatatggacacggacac 149  Q
    |||||||||||||||||||||||||||||    
T  15796409 ctatgaagcacggatatggacacggacac 15796381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 16192727 - 16192667
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgctt 268  Q
    ||||| ||| ||||||||||| |||||||||||| | ||||| |||| |||||| ||||||    
T  16192727 gtgtcagacacgacacgtgtctgacaccgggacatacctaatatgaggagtgtttgtgctt 16192667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 25211604 - 25211648
Alignment:
Q  228 ccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    |||||||| ||||||  ||||||||||||||||| ||||||||||    
T  25211604 ccgacaccaggacacgcctaatctgagaagtgtttgtgcttcata 25211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 273
Target Start/End: Original strand, 42893328 - 42893479
Alignment:
Q  121 ctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtctgacgcga 220  Q
    ||||||||||||||||||||||||||||| |||| || ||||| ||||||       ||||||||| ||||||||||  | ||||||||||| ||| | |    
T  42893328 ctatgaagcacggatatggacacggacacaccgacacagctaataatttgaaaaaa-tcacataatccagtgtaattacaagtgtcggtgtcagacacaa 42893426  T
Q  221 cacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||| ||||||  ||||| |||| ||||| | ||||||||||    
T  42893427 cacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcatag 42893479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 43564905 - 43565002
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||||| ||||||||| || ||||||||||| ||| ||||| ||||||||| |||||||||  |||||| ||||||||| ||||||||||||||    
T  43564905 tcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcataggt 43565002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 21191091 - 21190998
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    ||||||||||||||||||||  | ||||||||||| ||| | ||||||||||||| |||||||||  |||||| ||| ||||| ||||||||||    
T  21191091 tcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 21576780 - 21576685
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||||  | |||||| |||| ||| ||||||||||| ||||| |||||||  |||||| ||| ||||| ||||||||||||    
T  21576780 tcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 30502423 - 30502330
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    |||| ||||||||||||||| |||||||||||||| ||| |||||| |||||||||| ||||||   ||||||  || | ||||||||||||||    
T  30502423 tcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 30542766 - 30542673
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    |||| ||||||||||||||| |||||||||||||| ||| |||||| |||||||||| ||||||   ||||||  || | ||||||||||||||    
T  30542766 tcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30542673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 14873542 - 14873642
Alignment:
Q  179 cacataattcagtgtaattctatgtgtcggtgtct-----gacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||| ||||||||| ||||||||||||||      ||||| |||||||||| ||||||||||||  |||||| ||| ||||| ||||||||||||    
T  14873542 cacataatttagtgtaattatatgtgtcggtgtcatgtcggacgcaacacgtgtccaacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 14873641  T
Q  274 g 274  Q
    |    
T  14873642 g 14873642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 26312798 - 26312875
Alignment:
Q  183 taattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgt 260  Q
    ||||||||||||||| ||||| |||||||| ||| ||| ||||||| |||||| ||||||| |||||| ||| |||||    
T  26312798 taattcagtgtaattatatgtatcggtgtcggacacgatacgtgtctgacaccaggacacacctaatccgaggagtgt 26312875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 30099070 - 30098982
Alignment:
Q  181 cataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttc 269  Q
    |||||||| |||||||| |||||||||||||| ||  ||||||||||| ||||| |||||||  || |||  || ||||||||||||||    
T  30099070 cataattctgtgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtgcttc 30098982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 28588709 - 28588612
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||||||||||||||| || ||||||||||| ||| |||||| | || |||||| ||||||   ||||| ||  ||||| | ||||||||||||    
T  28588709 tcacataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccgaagagtgtccatgcttcataggt 28588612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 21542089 - 21542129
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  21542089 gtgtcggtgtcggacacgacacgtgtccgacaccgggacac 21542129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 7677764 - 7677835
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||| || ||| ||||||||||||||||||  |||||| ||| || ||  |||||||||||    
T  7677764 gtgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatccgaggagagtcggtgcttcatag 7677835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 32766943 - 32766872
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||  |  |||||||||||||||||| ||| ||  |||||||||| ||||| ||||||||||||    
T  32766943 gtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcatag 32766872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 39268612 - 39268541
Alignment:
Q  199 tatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttca 270  Q
    |||||||||||||  ||| ||||| ||||||||||| |||||||  |||||| ||| ||||| |||||||||    
T  39268612 tatgtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 39698600 - 39698671
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| ||| ||||| || |||||||||| |||||  |||||| ||| ||||| ||||||||||||    
T  39698600 gtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 27932261 - 27932355
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    ||||||||||||||||||  |  | | |||||| ||| ||||||||||| |||||| ||||||  |||||  ||| |||||| ||||||||||||    
T  27932261 acataattcagtgtaattacaaatcttggtgtcggacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcatagg 27932355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 38464361 - 38464311
Alignment:
Q  225 tgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||||||||||| |||||| ||| |||||  |||||||||||||    
T  38464361 tgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcataggt 38464311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 30098391 - 30098456
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||| ||| ||||||||||| |||||| ||||||| |||||| ||| | ||| ||||||||||||    
T  30098391 gtgtcggacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgcttcatag 30098456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 32630766 - 32630673
Alignment:
Q  182 ataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||| ||||||| |||||||| ||||| ||  ||||||||||||||||  | |||||| |||||  ||| |||||   ||||||||||||    
T  32630766 ataattcaatgtaattatatgtgtcagtgtcggatacgacacgtgtccgacattgagacacacctaattcgaggagtgtctatgcttcataggt 32630673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 19820376 - 19820328
Alignment:
Q  225 tgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||  |||||| ||| ||||| ||||||||||||    
T  19820376 tgtccgacaccgggacacgcctaatcagaggagtgtccgtgcttcatag 19820328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 21522809 - 21522849
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    ||||||||||| ||| ||||||||||||| |||||||||||    
T  21522809 gtgtcggtgtcggacacgacacgtgtccggcaccgggacac 21522849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 21533375 - 21533415
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    ||||||||||| ||| ||||||||||||| |||||||||||    
T  21533375 gtgtcggtgtcggacacgacacgtgtccggcaccgggacac 21533415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 598232 - 598327
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||| ||||| | ||||||| || ||||||||||| ||| |||||||||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  598232 tcacgtaattaaatgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 32287498 - 32287404
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||||||||||||| || | |||||||||||||| |||  |||| |||||||||||||||||||| |||||| ||| ||||| |||||||||||    
T  32287498 tcacataattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 21880178 - 21880271
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||  | ||||||||||| ||| |||||| ||||||||||| ||||||  |||||| ||||||||| ||||||||||||    
T  21880178 acataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 15680833 - 15680929
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    |||||||||| ||||||||| || ||||||||||| ||| ||||||||||||||||||| |||||  |||||  ||| ||||| |||||||||||||    
T  15680833 tcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatagg 15680929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 1401049 - 1401143
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    |||||||||||||||||||| || || |||||||| ||| |||||  ||||||||| ||||||||| |||||||||| ||||| | |||||||||||    
T  1401049 tcacataattcagtgtaattataagtatcggtgtccgacacgaca--tgtccgacatcgggacacacctaatctgaggagtgtccatgcttcatagg 1401143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 5409836 - 5409769
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||| ||| |||||||||||||||||||||||||  |||||| ||| ||||| ||||||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggt 5409769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 5835273 - 5835372
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggtaaac 279  Q
    |||||||||||||||||| |||||||||||||| |||  |||| ||||| || ||||||||||   ||||| ||||||||||  ||||| |||| |||||    
T  5835273 acataattcagtgtaattatatgtgtcggtgtcagacatgacatgtgtctgataccgggacacgcttaatccgagaagtgtttttgctttatagttaaac 5835372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 32308179 - 32308249
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||||||||  ||| |||||| |||||||||||| ||||||||||||| ||| ||||||| |||||||||    
T  32308179 gtgtcggtgttggacacgacacatgtccgacaccgagacacagctaatccgaggagtgttcatgcttcata 32308249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 33994236 - 33994333
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||||||| ||||  | ||||||||||| ||| |||||| ||||| |||||| |||||  ||||||  || |||||||||| |||||||||    
T  33994236 tcacataattcagtgcaattacaagtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttcataggt 33994333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 21864836 - 21864927
Alignment:
Q  182 ataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||| |||||||||  | |||||| |||| ||| |||||||||||||||||||||||||  |||||  ||| |||||  |||||||||||    
T  21864836 ataatttagtgtaattacaagtgtcgctgtcggacacgacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcatag 21864927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 22484052 - 22484143
Alignment:
Q  181 cataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||||||||| ||||| |||||||||||||| |||  ||||| ||||||||| || ||||   || ||| ||||||||| |||||||||||    
T  22484052 cataattcagtataattatatgtgtcggtgtcagacatgacacatgtccgacatcgagacatgtctgatccgagaagtgtccgtgcttcata 22484143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 24339701 - 24339772
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| ||| |||||||| ||||||||||||||||  |||||| ||| ||||  ||||||||||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatag 24339772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 20549815 - 20549909
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    |||| ||||||||||||||| |||||||||||||| ||| | |||| |||||||||  | |||||  |||||| ||| ||||  |||||||||||    
T  20549815 tcacgtaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 32094020 - 32093954
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacacc-gggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||| ||| |||||||||||||||||| |||||||  |||||| ||| ||||||||||||||||||    
T  32094020 gtgtcggacacgacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcatag 32093954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 7133285 - 7133212
Alignment:
Q  201 tgtgtcggtgtctgacgc-gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||| ||| | ||| |||||||||||| |||||||| |||||||||| || || ||||||||||||    
T  7133285 tgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacctaatctgaggagcgtccgtgcttcatag 7133212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 9482958 - 9483003
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacac 223  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||||    
T  9482958 tcacacaattcagtgtaattatatgtgtcggtgtcggacgcgacac 9483003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 43027469 - 43027404
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||| ||| |||||||||||||||||||||||||  |||||| ||  ||||| ||||||||||||    
T  43027469 gtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 27093448 - 27093376
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatc 250  Q
    |||||||||| ||||||||| |||| ||||||||  ||| ||||| |||||||||||  ||||||| ||||||    
T  27093448 tcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatc 27093376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 27184853 - 27184925
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatc 250  Q
    |||||||||| ||||||||| |||| ||||||||  ||| ||||| |||||||||||  ||||||| ||||||    
T  27184853 tcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatc 27184925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 9778571 - 9778626
Alignment:
Q  220 acacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||||||||||||||||||  ||||||  || ||||| ||||||||||||||    
T  9778571 acacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcataggt 9778626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 18213068 - 18212973
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||| ||||||||| |||||||||||||| ||| |||| | | || ||||| |||||||  || ||| ||| |||||  |||||||||||    
T  18213068 tcacataatttagtgtaattatatgtgtcggtgtcggacacgacccctttctgacacggggacacgccttatccgaggagtgtctgtgcttcatag 18212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 42720925 - 42720830
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||| | ||||||| |||||||| ||||||||| | ||| |||| | ||||||| ||||  |||||  || ||||||| |||||||||||    
T  42720925 tcacataattaaatgtaattatatgtgtcagtgtctgacacaacatgtgtacaacaccggaacacgtctaattcgataagtgtttgtgcttcatag 42720830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 640137 - 640171
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  640137 tcacataattcagtgtaattatatgtgtcggtgtc 640171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 17852065 - 17852119
Alignment:
Q  219 gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||||| |||||| |||||  ||| ||||| ||||||||||||    
T  17852065 gacacgtgtccgacaccgagacacacctaattcgaggagtgtccgtgcttcatag 17852119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 22602745 - 22602711
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  22602745 tcacataattcagtgtaattatatgtgtcggtgtc 22602711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 26033461 - 26033392
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    ||||||||||| |||  ||||||||||||| |||| |||||| |||||| ||| ||||| |||| |||||    
T  26033461 gtgtcggtgtcagacatgacacgtgtccgataccgcgacacacctaatccgaggagtgtccgtgtttcat 26033392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 20545326 - 20545278
Alignment:
Q  122 tatgaagcacggatatggacacggacacgccgagaccgctaaaaatttg 170  Q
    ||||||||||||||| ||| ||||||||||| | |||||||| ||||||    
T  20545326 tatgaagcacggatacggatacggacacgccaacaccgctaataatttg 20545278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 24105709 - 24105797
Alignment:
Q  185 attcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||  | ||||||| ||| | | | ||| |||||||||||||||||||  |||| | ||| |||||| |||||||||||    
T  24105709 attcagtgtaattacaagtgtcggagtcgggcacaacatgtgtccgacaccgggacacgcctaacccgaggagtgtttgtgcttcatag 24105797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 39138468 - 39138532
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    |||||||||||||||||||| ||| |||||||||| ||| ||| || ||||  |||| |||||||    
T  39138468 tcacataattcagtgtaattatatatgtcggtgtcggacacgatacatgtctaacacggggacac 39138532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 497 - 403
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||| ||||||||||||||  | ||||||||||| ||| |||| ||||||||||||||||||||| |||||| ||| ||||| |||||||||||    
T  497 tcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 2438754 - 2438661
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    ||||||||||||||||||||  | ||||||||||| ||| |||||| ||||||||||||||||||  |||||| ||| ||||| ||||||||||    
T  2438754 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 18841046 - 18840953
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||| |||||||||  | ||||||||||| ||| |||||| ||||||||||||||||||| |||||| ||| ||||| ||||||||||||    
T  18841046 acataattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 28596493 - 28596587
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    |||||||| ||||||||||| || ||||||||||| ||| |||||||||||||||||  ||||||  |||||| ||| ||||| |||||||||||    
T  28596493 tcacataagtcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 30404885 - 30404790
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||||  | ||||||| ||| ||| |||||| ||||||||||| |||||   ||||||||||||| ||| |||||||||||    
T  30404885 tcacataattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccgacaccaggacatgcctaatctgagaagcgtttgtgcttcatag 30404790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 15972903 - 15972993
Alignment:
Q  184 aattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    ||||||||||||||  | ||||||||||| ||| ||||||||||||||| |||||||||| |||||| ||  | ||| |||||||||||||    
T  15972903 aattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcatagg 15972993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 5367216 - 5367280
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||| | |||||| |||||||||    
T  5367216 tcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatatccgactccgggacac 5367280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 37559001 - 37559096
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||| |||||||  | ||||||||||| |||  ||||||||||||||||||| ||||   ||||| ||| ||||| ||||||||||||    
T  37559001 tcacataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttcatag 37559096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 34994015 - 34993921
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    |||||||||| ||||||| |||||||| |||||  || ||||| ||||||||||| |||||||  |||||   || |||||||||||||||||||    
T  34994015 acataattcaatgtaattatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttcatagg 34993921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 37419802 - 37419875
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||| ||| |||  ||||||||||||||||||||  |||||| ||| ||||| ||||||||||||||    
T  37419802 gtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggt 37419875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 20242762 - 20242706
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacac 234  Q
    |||||||||||||||||||| |||||||||||||| ||| | ||||||||| |||||    
T  20242762 tcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacac 20242706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 35056927 - 35056998
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| ||| ||||||||||||||||| |  ||||  |||||||||| ||||| ||||||||||||    
T  35056927 gtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 38117194 - 38117099
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||| ||| ||||||||  | |||| |||||| ||| | |||||||||||||||||||||||  |||||| |||  |||| ||||||||||||    
T  38117194 tcacatacttcggtgtaattacaagtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 26769571 - 26769641
Alignment:
Q  203 tgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||| || ||| ||||||||||||||||| |||||||  |||||| ||| ||||| ||||||||||||    
T  26769571 tgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 29176528 - 29176442
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgt 264  Q
    |||||||||||||||||||| || |||| |||||  ||| || ||| |||||||||| | |||||| ||||||  ||||||||||||    
T  29176528 tcacataattcagtgtaattataagtgttggtgttggacacggcacatgtccgacactgagacacacctaatccaagaagtgttcgt 29176442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 42511375 - 42511322
Alignment:
Q  220 acacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||| ||||||| ||||||| ||| ||||| ||||||||||||    
T  42511375 acacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 5040758 - 5040822
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    |||||||||||| |||||||  | ||||||||||| ||| ||||| ||||||||| |||||||||    
T  5040758 tcacataattcaatgtaattacaagtgtcggtgtcggacacgacatgtgtccgacgccgggacac 5040822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 21782816 - 21782744
Alignment:
Q  201 tgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||| |||||| | | |||||||||||| ||||||||||||  |||||||| | ||||| ||||||||||||    
T  21782816 tgtgttggtgtcaggcacgacacgtgtccaacaccgggacacgtctaatctgtggagtgtccgtgcttcatag 21782744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 31808101 - 31808173
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatc 250  Q
    |||||||||||||||||||| |||||||| ||||   || |||||| ||| ||||||| ||||||| ||||||    
T  31808101 tcacataattcagtgtaattatatgtgtcagtgttgaacacgacacatgttcgacacctggacacacctaatc 31808173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 37411279 - 37411215
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    |||||||||||||||| ||| ||||||||| ||||  || |||| |||||||||||| |||||||    
T  37411279 tcacataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacactgggacac 37411215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 24009320 - 24009414
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||| ||| |||||||| | |||||||||||||| ||| ||||||||||| ||||| |||||||  || |||  || ||||| ||||||||||||    
T  24009320 tcacaaaatgcagtgtaaat-tatgtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 24009414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 5891785 - 5891715
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    |||||||||| |||| ||||||||||| |||| || |||||  ||||| | ||||||||||||| ||||||    
T  5891785 gtgtcggtgtttgacacgacacgtgtcagacatcgagacacgtctaatttaagaagtgttcgtgtttcata 5891715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 11223858 - 11223793
Alignment:
Q  207 ggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||| ||| |||||| |||| |||||||||||||  |||||||||| ||||| ||||||||||||    
T  11223858 ggtgtcggacacgacac-tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcatag 11223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 19980740 - 19980794
Alignment:
Q  219 gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||| ||||||||| || |||||| |||||| ||||||||||| ||||||||||    
T  19980740 gacacatgtccgacatcgagacacacctaatccgagaagtgttcatgcttcatag 19980794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 27084229 - 27084279
Alignment:
Q  120 cctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttg 170  Q
    ||||||||||||||||| |||||||||||| |||| || ||||| ||||||    
T  27084229 cctatgaagcacggatacggacacggacactccgacactgctaataatttg 27084279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 24975304 - 24975255
Alignment:
Q  224 gtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| |||||| | |||||||||| ||||| ||||||||||||    
T  24975304 gtgtccgacactgggacaaatctaatctgaggagtgtccgtgcttcatag 24975255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 27447121 - 27447088
Alignment:
Q  116 aagacctatgaagcacggatatggacacggacac 149  Q
    ||||||||||||||||||||| ||||||||||||    
T  27447121 aagacctatgaagcacggatacggacacggacac 27447088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 41843465 - 41843534
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgt-----ctgacgcgacacgtgtccgacaccgggacac 242  Q
    ||||||||||| || ||||| |||||||||||||     | ||||||||||||||||||||| |||||||    
T  41843465 tcacataattcggtataattatatgtgtcggtgttgtgtcggacgcgacacgtgtccgacacggggacac 41843534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 23718050 - 23718082
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtg 210  Q
    |||||||||||||||||||| ||||||||||||    
T  23718050 tcacataattcagtgtaattatatgtgtcggtg 23718082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 24105722 - 24105754
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtg 210  Q
    |||||||||||||||||||| ||||||||||||    
T  24105722 tcacataattcagtgtaattatatgtgtcggtg 24105754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 37497150 - 37497242
Alignment:
Q  184 aattcagtgtaattctatgtgtcggtgtctgacgc-gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||| ||||||  ||| |||||||||| ||| | ||||| ||| || ||||||||||  |||||||  |||||||| ||||||||||||||    
T  37497150 aattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcggcaccgggacatggctaatcccagaagtgtccgtgcttcataggt 37497242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 70304 - 70394
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttca 270  Q
    |||||||||||||||||| || ||||||||||| ||| |||||||||||||||||| |||||   |||||| ||  |||||||||||||||    
T  70304 acataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 3025575 - 3025668
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcat 271  Q
    |||||||||||||||||||| || ||||| ||||| ||| ||||||||||| ||||| | ||||| ||||||| ||| ||||| ||||||||||    
T  3025575 tcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttcat 3025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 275
Target Start/End: Original strand, 5813567 - 5813713
Alignment:
Q  128 gcacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgt 227  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||       ||||||| || ||||||| |  | ||||||||||| ||| ||||||||||    
T  5813567 gcacggatacggacacggacacgccgacacagctaataatttgaaaaag-tcacatattttagtgtaaatacaagtgtcggtgtcggacacgacacgtgt 5813665  T
Q  228 ccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||||||||||  |||||  ||| ||||| |||||||| |||||    
T  5813666 ccgacaccgggacacgcctaattggaggagtgtccgtgcttcgtaggt 5813713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 29510304 - 29510231
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||| ||| |||| ||||||||||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  29510304 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggt 29510231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 20679430 - 20679366
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    ||||||| |||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    
T  20679430 tcacatagttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccgacaccgggacac 20679366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 926815 - 926760
Alignment:
Q  186 ttcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggaca 241  Q
    |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  926815 ttcagtgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggaca 926760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 14134723 - 14134818
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||||||| ||| ||||||||||  || ||||||||||||| |||| ||||||  |||||  ||| ||||| |||| |||||||    
T  14134723 tcacataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtgtttcatag 14134818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 22652035 - 22652106
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| ||| ||||| |||||||||||||||||||  |||||| ||| ||||| ||||||||||||    
T  22652035 gtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 33405418 - 33405347
Alignment:
Q  179 cacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatc 250  Q
    ||||||||| ||||||||| |||||||||||||| ||| |||||| |||| |||||| |||||| |||||||    
T  33405418 cacataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatc 33405347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 24413592 - 24413499
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| |||||| || ||||| ||||| ||| |||  ||||||| ||| ||||||||  |||||| ||||||||| ||||||||||||    
T  24413592 acataattcagggtaattataagtgtcagtgtcggacacgatgcgtgtccaacagcgggacacgtctaatccgagaagtgtccgtgcttcatag 24413499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 40332215 - 40332312
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||||||||||||  | ||||||||||  ||| |||||||||||| |||||||||| |  |||||| ||| ||||| |||| |||| ||||    
T  40332215 tcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtcccacaccgggacgcgcctaatccgaggagtgtccgtgtttcacaggt 40332312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 15816129 - 15816058
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||| |||||| ||| |||||||  ||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  15816129 gtgttggtgtcggacacgacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 27213595 - 27213646
Alignment:
Q  224 gtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  27213595 gtgtcggacaccgggacacggctaatccgagaagtgtccgtgcttcataggt 27213646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 29447503 - 29447574
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||| ||| ||||| ||||||||||||||||||   |||||| ||| ||||| ||||||||||||    
T  29447503 gtgtcggtgtcagacacgacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttcatag 29447574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 36450789 - 36450694
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||| ||||||||||||||  | |||| |||||| ||| |||| ||||||||||||| ||||||  |||||| ||| |||||  |||||||||||    
T  36450789 tcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 126369 - 126295
Alignment:
Q  191 tgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtg 265  Q
    ||||||| |||||||| ||||| ||| |||||||||||| | |||||||||| ||||||| ||| ||||| ||||    
T  126369 tgtaattatatgtgtcagtgtcggacacgacacgtgtccaataccgggacacggctaatccgaggagtgtccgtg 126295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 18407743 - 18407840
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||||||||||||  | |||||| || | ||| |||||| ||||||||||  ||||||  |||||  ||| ||||| ||||||||||||||    
T  18407743 tcacataattcagtgtaattacaagtgtcgctgccggacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcataggt 18407840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 38079023 - 38079112
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgct 267  Q
    |||||| ||||||||||||| |||| |||| |||| ||| |||| | |||||||||||||| |||   |||||||| |||||| ||||||    
T  38079023 tcacatgattcagtgtaattatatgcgtcgatgtcggacacgacgcatgtccgacaccgggccacgtataatctgaaaagtgtccgtgct 38079112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 31557020 - 31557084
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    ||||||||||||||||||||  | || |||||||| ||| |||||| ||||||||||| ||||||    
T  31557020 tcacataattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacac 31557084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 949278 - 949203
Alignment:
Q  200 atgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||| | ||  |||||| | |||||||||| |||||  |||||||||| | ||||||||||||||||||    
T  949278 atgtgtcggtgccggatacgacacatatccgacaccgagacactcctaatctgaggaatgttcgtgcttcataggt 949203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 3951571 - 3951476
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||| ||| ||||||| || |||||||||||||| ||| ||||||||||| ||||| || ||||  ||||||  || ||| | ||||||||||||    
T  3951571 tcacaaaatgcagtgtacttatatgtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttcatag 3951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 150
Target Start/End: Complemental strand, 4298996 - 4298965
Alignment:
Q  119 acctatgaagcacggatatggacacggacacg 150  Q
    ||||||||||||||||||||||||||||||||    
T  4298996 acctatgaagcacggatatggacacggacacg 4298965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 4786373 - 4786339
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  4786373 tcacataattcagtgtaattatatgtgtcggtgtc 4786339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 8293849 - 8293931
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgt 260  Q
    |||| ||||||||||||||| ||||||||||||||  ||  ||||| | || |||||| ||||||| |||||| ||| |||||    
T  8293849 tcacgtaattcagtgtaattatatgtgtcggtgtcaaacatgacacatatctgacacctggacacacctaatccgaggagtgt 8293931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 8343381 - 8343447
Alignment:
Q  208 gtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatagg 274  Q
    ||||| ||| |||||||||||||||||||||||||  |||||| ||  |||||  ||||||||||||    
T  8343381 gtgtccgacacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatagg 8343447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 8847280 - 8847314
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  8847280 tcacataattcagtgtaattatatgtgtcggtgtc 8847314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 11927121 - 11927087
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  11927121 tcacataattcagtgtaattatatgtgtcggtgtc 11927087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 22596020 - 22596070
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccg 230  Q
    ||||||||||||||||||  | |||| |||||| |||||||||||||||||    
T  22596020 acataattcagtgtaattacaagtgttggtgtcggacgcgacacgtgtccg 22596070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 26902210 - 26902176
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtc 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  26902210 tcacataattcagtgtaattatatgtgtcggtgtc 26902176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 37283845 - 37283755
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||||||  |||||||||||||  ||| |||||||||||    ||||||||||  |||||| ||| ||||  ||||||||||||    
T  37283845 tcacataattcagtgtaat--tatgtgtcggtgtgggacacgacacgtgtc---taccgggacacgtctaatccgaggagtgcccgtgcttcatag 37283755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 43737846 - 43737752
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcata 272  Q
    ||||| ||| |||||||||| |||||||||||||| ||| ||||| ||||| ||||| |||| ||  || |||  || ||||| |||||||||||    
T  43737846 tcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacaggtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 43737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 9414910 - 9414857
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccga 231  Q
    ||||||||||||||| |||| || |||| |||||| ||| ||||||||||||||    
T  9414910 tcacataattcagtgcaattataagtgttggtgtcagacacgacacgtgtccga 9414857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 40064032 - 40064081
Alignment:
Q  224 gtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||| |||||    
T  40064032 gtgtccgacaccgggacacatctaatccgaggagtgtccgtgctacatag 40064081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 20873093 - 20873157
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    |||||||||| |||||||||  | ||||||||||| ||| ||| |||||||||| |||| |||||    
T  20873093 tcacataatttagtgtaattacaagtgtcggtgtcggacacgatacgtgtccgataccgagacac 20873157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 22197725 - 22197669
Alignment:
Q  219 gacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||||||||||||||||  |||  |||||||||| ||||| ||||||| ||||||    
T  22197725 gacacgtgtccgacaccggatcacgcctaatctgaggagtgtccgtgctttataggt 22197669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 241653 - 241724
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||| |||||| ||| |||||||||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  241653 gtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 236964 - 236912
Alignment:
Q  223 cgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    |||||| |||||||||||||| |||||||||| |||||  |||||||||||||    
T  236964 cgtgtctgacaccgggacacacctaatctgaggagtgtctgtgcttcataggt 236912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 8833 - 8917
Alignment:
Q  189 agtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||  | ||||||||||| ||| ||||||||||||||||||| |||||  |||||||||| ||| | ||||||||||||    
T  8833 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatag 8917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 71784 - 71857
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcataggt 275  Q
    ||||||||||| ||| | |||||||||||||||||||||||  |||||| ||| |||||  |||||||||||||    
T  71784 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcataggt 71857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 14498 - 14646
Alignment:
Q  122 tatgaagcacggatatggacac-ggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgtctgacgcga 220  Q
    ||||||||||||||| |||||| ||||||||||| ||  |||| ||||||       ||||||||||||||||||||  | |||   ||||| ||| |||    
T  14498 tatgaagcacggatacggacaccggacacgccgacacaactaataatttgaaaaaa-tcacataattcagtgtaattacaagtg---gtgtcggacacga 14593  T
Q  221 cacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    |||||||||||||||| |||||  ||||||  || ||||| ||||||||||||    
T  14594 cacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcatag 14646  T

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Target: scaffold0793 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 4918 - 4821
Alignment:
Q  178 tcacataattcagtgtaattctatgtgtcggtgtctg--acgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||||||||||  | |||| |||||||   || |||||| |||||||||| |||||||  |||||| ||| ||||| ||||||||||||    
T  4918 tcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

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Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 45563 - 45502
Alignment:
Q  180 acataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacaccgggaca 241  Q
    ||||||||||||||||||  | ||||||||||| ||| ||||||||||| ||||||| ||||    
T  45563 acataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgcgaca 45502  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 92775 - 92824
Alignment:
Q  121 ctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttg 170  Q
    |||||||||||||||| |||||| |||||||||| |||||||| ||||||    
T  92775 ctatgaagcacggatacggacactgacacgccgacaccgctaataatttg 92824  T

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Target: scaffold0123 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 44525 - 44454
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||  ||| | ||||||||||||||| ||||||  | |||||||||||||||  |||||||||||    
T  44525 gtgtcggtgttggacacaacacgtgtccgacactgggacatggttaatctgagaagtgtctgtgcttcatag 44454  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 135313 - 135263
Alignment:
Q  223 cgtgtccgacaccgggacacagctaatctgagaagtgttcgtgcttcatag 273  Q
    ||||||||||||| ||||||  ||||||||||  |||||||||||||||||    
T  135313 cgtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcatag 135263  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 90871 - 90924
Alignment:
Q  182 ataattcagtgtaattctatgtgtcggtgtctgacgcgacacgtgtccgacacc 235  Q
    |||||||||||||||| ||| ||||| |||| ||| | ||||||||||||||||    
T  90871 ataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacacc 90924  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 3969 - 3941
Alignment:
Q  121 ctatgaagcacggatatggacacggacac 149  Q
    |||||||||||||||||||||||||||||    
T  3969 ctatgaagcacggatatggacacggacac 3941  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 53239 - 53279
Alignment:
Q  202 gtgtcggtgtctgacgcgacacgtgtccgacaccgggacac 242  Q
    ||||||||||| |||  ||||||||||||||||||||||||    
T  53239 gtgtcggtgtcggacatgacacgtgtccgacaccgggacac 53279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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