View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_20 (Length: 258)
Name: NF0033_low_20
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 2272165 - 2272393
Alignment:
| Q |
30 |
gttattactatgtttctttgtactgatttggcgaaaaatgtagactatatatgcttcttaaattctcacagttataacactaacattgtatttatgtcaa |
129 |
Q |
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| T |
2272165 |
gttattactatgtttctttgtactgatttggctaaaaatgtagactatatatgcttcttaaattctcacagttataacactaacattgtatttatgtcaa |
2272264 |
T |
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| Q |
130 |
ctgttttcaaatacagtggtgtattttgcatcctgatttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatggttct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272265 |
ctgttttcaaatacagtggtgtattttgcatcctgatttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatggttct |
2272364 |
T |
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| Q |
230 |
tgtaatggtttgagtcttcttgtgcattt |
258 |
Q |
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| T |
2272365 |
tgtaatggtttgagtcttcttgtgcattt |
2272393 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 46353776 - 46353861
Alignment:
| Q |
165 |
atttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatgg---ttcttgtaatggtttgagtctt |
247 |
Q |
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||||||||||| | |||| ||||| ||||| |||||| |||||||| |||| |||||||| |||||||||||||||||||||| |
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| T |
46353776 |
atttggctggtagtattgattatgcatgtagcttatcagattgtactgcattaggatatggatcttcttgtaatggtttgagtctt |
46353861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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