View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0033_low_24 (Length: 219)
Name: NF0033_low_24
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_24 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 46267120 - 46267310
Alignment:
| Q |
30 |
catgtgacatgaagatagaatagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggaatctcaagagaatcacaatca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
46267120 |
catgtgacatgaagatagaatagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgtgaatcccaagagaatcacaatca |
46267219 |
T |
|
| Q |
130 |
tacatataactcctttacctttgtctaatgatgcattgaataattgtt-nnnnnnnnnnngtgaaataaaagatgtaagaggagtatgaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46267220 |
tacatataactcctttacctttgtctaatgatgcattgaataattgttaaaaaaaaaagagtgaaataaaagatgtaagaggagtatgaat |
46267310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 55859135 - 55859323
Alignment:
| Q |
30 |
catgtgacatgaagatagaatagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggaatctcaagagaatcacaatca |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55859135 |
catgtgacatgaagatagaatatatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggtatctcaagagaatcacaatca |
55859234 |
T |
|
| Q |
130 |
tacatataactcctttacctttgtctaatgatgcattgaataattgttnnnnnnnnnnngtgaaataaaagatgtaagaggagtatgaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55859235 |
tacatataactcctttacctttgtctaatgatgcattgagtaattgtt-aaaaaaaagagtgaaataaaagatgtaagaggagtatgaat |
55859323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 3822898 - 3822751
Alignment:
| Q |
30 |
catgtgacatgaagatagaatagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggaatctcaagagaatcacaatca |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3822898 |
catgtgacatgaagatagaagagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggaatctcaagagaatcacaatca |
3822799 |
T |
|
| Q |
130 |
tacatataactcctttacctttgtctaatgatgcattgaataattgtt |
177 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
3822798 |
tacatataactcctttacccctgtctaatgatgcattgaatatttgtt |
3822751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 3822734 - 3822704
Alignment:
| Q |
189 |
gtgaaataaaagatgtaagaggagtatgaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3822734 |
gtgaaataaaagatgtaagaggagtatgaat |
3822704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 29275463 - 29275316
Alignment:
| Q |
30 |
catgtgacatgaagatagaatagatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggaatctcaagagaatcacaatca |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29275463 |
catgtgacatgaagatagaatatatggaaggatatagtgaataacatgcattaaggcaagtatcttggttctaatgggtatctcaagagaatcacaatca |
29275364 |
T |
|
| Q |
130 |
tacatataactcctttacctttgtctaatgatgcattgaataattgtt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
29275363 |
tacatataactcctttacctttgtctaatgatacattgagtaattgtt |
29275316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 758 times since January 2019
Visitors: 1105