View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_25 (Length: 210)
Name: NF0033_low_25
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 11328288 - 11328095
Alignment:
| Q |
2 |
attcacattgagaggaaggaggagctcaggagacctttgactcctattgaggcctatcgtatattatctcaaatgttccatggtgtagaacctggcaaaa |
101 |
Q |
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| T |
11328288 |
attcacattgagaggaaagatgagtttgggagaactttgactcctaaggaagcctatcgtatattatctcaaaagttccatggtgtagaacctggaaaaa |
11328189 |
T |
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| Q |
102 |
tgaagcaggaaaagcgtaagaagaaatttcatgaagaattgaaattgaagcaaatgcagagttcagatacaccattgctatttgtggaaagaat |
195 |
Q |
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| T |
11328188 |
tgaagcaggaaaagcgtaagaagaaatttcatgaagaactgaaattgaagcaaatgcagaattcagatacaccattgctatttacggaaagaat |
11328095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 11486309 - 11486116
Alignment:
| Q |
2 |
attcacattgagaggaaggaggagctcaggagacctttgactcctattgaggcctatcgtatattatctcaaatgttccatggtgtagaacctggcaaaa |
101 |
Q |
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||||||||||||||||| || ||| | ||||| |||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
11486309 |
attcacattgagaggaaagatgagtttgggagaactttgactcctaaggaagcctatcgtatattatctcaaaagttccatggtgtagaacctggaaaaa |
11486210 |
T |
|
| Q |
102 |
tgaagcaggaaaagcgtaagaagaaatttcatgaagaattgaaattgaagcaaatgcagagttcagatacaccattgctatttgtggaaagaat |
195 |
Q |
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| T |
11486209 |
tgaagcaggaaaagcgtaagaagaaatttcatgaagaactgaaattgaagcaaatgcagaattcagatacaccattgctatttacggaaagaat |
11486116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 37373143 - 37373005
Alignment:
| Q |
38 |
ttgactcctattgaggcctatcgtatattatctcaaatgttccatggtgtagaacctggcaaaatgaagcaggaaaagcgtaagaagaaatttcatgaag |
137 |
Q |
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|||||||||| || |||| ||| ||| | ||||| | |||||||||| || ||||||||||||||||||||||||||||| ||| ||||| | |||| |
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| T |
37373143 |
ttgactcctaaggaagcctttcggataatttctcataagttccatggtaaaggacctggcaaaatgaagcaggaaaagcgtatgaaacaattttacgaag |
37373044 |
T |
|
| Q |
138 |
aattgaaattgaagcaaatgcagagttcagatacaccat |
176 |
Q |
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|||||||||||||||||||| ||||||| |||||||||| |
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| T |
37373043 |
aattgaaattgaagcaaatgaagagttcggatacaccat |
37373005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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