View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_3 (Length: 435)
Name: NF0033_low_3
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 252
Target Start/End: Original strand, 42398921 - 42399143
Alignment:
| Q |
33 |
tttaaataaatcgttcttcaaactaa-cctaactcacggttcagatttcaccacttcatcaaaagaaacatcaacggctcagattttaccaagccaacac |
131 |
Q |
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| T |
42398921 |
tttaaataaatcgtgcttcaaactaaacctaactcacggttcagatttcaccacttcatcaaaagaaacatcaacggctcagattttaccaagccaacac |
42399020 |
T |
|
| Q |
132 |
aatttttctgaataat-aaaaaagggaacgcaagcaaaagtagcttctgacaaacgtcgtcgtcgtcgcaagc-aaaattcctcttcctccatcttgaag |
229 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42399021 |
aatttttctgaataataaaaaaagggaacgcaagcaaaagtagcttctgacaaacgtcgtcgtcgtcgcaagcaaaaattcctcttcctccatcttgaag |
42399120 |
T |
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| Q |
230 |
ctgcaagtacgttcaaaatttcc |
252 |
Q |
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||||||||||||||||||||||| |
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| T |
42399121 |
ctgcaagtacgttcaaaatttcc |
42399143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 248 - 424
Target Start/End: Original strand, 42399164 - 42399341
Alignment:
| Q |
248 |
tttccattttctttctgcggtattgctacaaatta-ttgcgattttcannnnnnnatttcttattctcagattgtttagttattagaagatgcaaaacag |
346 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42399164 |
tttccattttctttctgcggtattgctacaaattgcttgcgattttaatatttttatttcttattctcagattgtttagttattagaagatgcaaaacag |
42399263 |
T |
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| Q |
347 |
tgaggaacaaaagtatagagccagaagattagagattacagacaagaaaaaaggtttcatagaattactgcaacagct |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42399264 |
tgaggaacaaaagtatagagccagaagattagagattacagacaagaaaaaaggtttcatagaattactgcagcagct |
42399341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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