View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_4 (Length: 429)
Name: NF0033_low_4
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 229 - 421
Target Start/End: Original strand, 36932912 - 36933104
Alignment:
| Q |
229 |
aaggttgaaaactcgtctaatattttgtttttattgtgcttaccagggcaccaccagcaacgtttcctcgacctgagggtaaactgcagaccatcacttt |
328 |
Q |
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| T |
36932912 |
aaggttgaaaactcgtctaatattttgtttttattgtgcttaccagggcaccaccagcaacgtttcctcgacctgagggtaaactgcagaccatcacttt |
36933011 |
T |
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| Q |
329 |
tcctgaggatgtttatgttaagagtttttataaaaaatacccagaatcaaaataccatgatcccatcaagtatggtcttttttcttgtctctg |
421 |
Q |
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| T |
36933012 |
tcctgaggatgtttatgttaagagtttttataaaaaatacccagaatcaaaataccatgatcccatcaagtatggtcttttttctcgtctctg |
36933104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 36932778 - 36932847
Alignment:
| Q |
95 |
tcttggactatgctatactttttagtttatttatttaggtattctttggatgtcatgtgtttgctgctga |
164 |
Q |
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| T |
36932778 |
tcttgaactatgctatactttttagtttatttatttaggaattctttggatgtcatgtgtttgctgctga |
36932847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 270 - 402
Target Start/End: Original strand, 990515 - 990647
Alignment:
| Q |
270 |
accagggcaccaccagcaacgtttcctcgacctgagggtaaactgcagaccatcacttttcctgaggatgtttatgttaagagtttttataaaaaatacc |
369 |
Q |
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| T |
990515 |
accagggcaccaccagcaacatttcctcgacctgagggtaaactgcataccatcacttttcctgaagatgtttatgtcaagaggttttataaaaaatacc |
990614 |
T |
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| Q |
370 |
cagaatcaaaataccatgatcccatcaagtatg |
402 |
Q |
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| T |
990615 |
cagaatcaaaataccatcatcccatcaagtatg |
990647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 45762193 - 45762282
Alignment:
| Q |
6 |
acaaaaaacaattgttcctatgtttatgatgctgagaatcatagagagtcatgctcatggcttgtacctgcttttgtgtttgttaatatt |
95 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45762193 |
acaaaaaacaattgttcctatgtttatgttgctgagactcatagagagtcatgctcatggcttgtacctgcttttgtgtttgttaatatt |
45762282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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