View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_5 (Length: 419)
Name: NF0033_low_5
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_5 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 48 - 417
Target Start/End: Complemental strand, 29054684 - 29054336
Alignment:
| Q |
48 |
tttttaaaaatttgagaatatgtggtgattgtcacaatgccattttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggtt |
147 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
29054684 |
tttttaaaaatttgagaatatgtggtgattgtcacaatgccatttagtatatgtctaaagttgtttgtgtgattattactgttagagactccttgaggtt |
29054585 |
T |
|
| Q |
148 |
ttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29054584 |
ttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgt |
29054485 |
T |
|
| Q |
248 |
gtctaactcaaatttcatcagattgttcgtgactctctcgtgggtatgaacccactcgctcgactcgtggcgattctgtctaacttgcttgagcatctca |
347 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29054484 |
gtctaactcaaatttcatcagattgttcatgactctctcgtgcgtatgaacccactcgctcgactcgtggcgattctgt--------------------- |
29054406 |
T |
|
| Q |
348 |
ctacgaactgtctcttagatcatgtattttattctctcaatttgttccagagatcgttcatctcactcga |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
29054405 |
ctacgaactgtctcttagatcatgtattttattctctcaatttgttccagagatcgttcatgtctctcga |
29054336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 48 - 262
Target Start/End: Complemental strand, 34635522 - 34635308
Alignment:
| Q |
48 |
tttttaaaaatttgagaatatgtggtgattgtcacaatgccattttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggtt |
147 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||| |||| ||| ||||||||||| ||||| |
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| T |
34635522 |
tttttaagaatttgagaatatgtggtgattgtcacaatgccattaagtatatggctaaggttgttgatgtgatgattgttgtcagagactccttcaggtt |
34635423 |
T |
|
| Q |
148 |
ttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgt |
247 |
Q |
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| |||||||||||||||||| |||||| ||||| || ||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | |
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| T |
34635422 |
tcatcacttcaaaaatggaaattgttcatgtaatgatttatggtgactatttgactaagattattgggaataaggggtcacaatgatcctatctgagcct |
34635323 |
T |
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| Q |
248 |
gtctaactcaaattt |
262 |
Q |
| |
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|| ||||||||||| |
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| T |
34635322 |
ttccaactcaaattt |
34635308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 29312352 - 29312495
Alignment:
| Q |
56 |
aatttgagaatatgtggtgattgtcacaatgccattttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggttttatcact |
155 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |||||| ||| |||||||||||||||||| |
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| T |
29312352 |
aatttgagaatatgtggtgattgtcacaatgccattaagtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcact |
29312451 |
T |
|
| Q |
156 |
tcaaaaatggaagttgttcttgtaaagacttatggtgattattt |
199 |
Q |
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||||||||| || |||||||||||| || ||||||||| ||||| |
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| T |
29312452 |
tcaaaaatgaaaattgttcttgtaatgatttatggtgaatattt |
29312495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 29054732 - 29054702
Alignment:
| Q |
13 |
gctgttgcatttgggatacttaatttgaatg |
43 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29054732 |
gctgttgcatttgggatacttaatttgaatg |
29054702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 48 - 262
Target Start/End: Original strand, 4392 - 4606
Alignment:
| Q |
48 |
tttttaaaaatttgagaatatgtggtgattgtcacaatgccattttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggtt |
147 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||| |||| ||| ||||||||||| ||||| |
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| T |
4392 |
tttttaagaatttgagaatatgtggtgattgtcacaatgccattaagtatatggctaaggttgttgatgtgatgattgttgtcagagactccttcaggtt |
4491 |
T |
|
| Q |
148 |
ttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgt |
247 |
Q |
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| |||||||||||||||||| |||||| ||||| || ||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | |
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| T |
4492 |
tcatcacttcaaaaatggaaattgttcatgtaatgatttatggtgactatttgactaagattattgggaataaggggtcacaatgatcctatctgagcct |
4591 |
T |
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| Q |
248 |
gtctaactcaaattt |
262 |
Q |
| |
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|| ||||||||||| |
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| T |
4592 |
ttccaactcaaattt |
4606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 48 - 262
Target Start/End: Original strand, 28743829 - 28744043
Alignment:
| Q |
48 |
tttttaaaaatttgagaatatgtggtgattgtcacaatgccattttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggtt |
147 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||| || |||| ||| ||||||||||||||||| |
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| T |
28743829 |
tttttaagaatttgagaatatgcggtgattgtcacaatgccattaagtatatgtctaaggttgtcggtgttataattgttgtcagagactccttgaggtt |
28743928 |
T |
|
| Q |
148 |
ttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgt |
247 |
Q |
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| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| || || | ||||| |||| | |
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| T |
28743929 |
tcatcacttcaaaaatggaaattgttcttgtaaagacttatggtgattatttgaatcagattattgggattaagtggtgacgataatcctatctgagttt |
28744028 |
T |
|
| Q |
248 |
gtctaactcaaattt |
262 |
Q |
| |
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||||||||||||||| |
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| T |
28744029 |
gtctaactcaaattt |
28744043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 13792413 - 13792255
Alignment:
| Q |
48 |
tttttaaaaatttgagaatatgtggtgattgtcacaatgccattttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggtt |
147 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| || |||||| ||||| |||| || ||||||||||||||||| |
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|
| T |
13792413 |
tttttaagaatttgagaatatgtggtgattgtcataatgccattaagtatatgtccaatgttgttggtgtgacgattgtcgtcagagactccttgaggtt |
13792314 |
T |
|
| Q |
148 |
ttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcag |
206 |
Q |
| |
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| |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| |
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| T |
13792313 |
tcatcacttcaaaaatggaaattgttcttgtaaagatttttggtgattatttgactcag |
13792255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 13792149 - 13792094
Alignment:
| Q |
194 |
ttatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgtgt |
249 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| ||||| |||| |||| |
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|
| T |
13792149 |
ttatttgactcggattattgggaataagtcgtcacaatgatcctatctgagtgtgt |
13792094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 13792462 - 13792432
Alignment:
| Q |
13 |
gctgttgcatttgggatacttaatttgaatg |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
13792462 |
gctgttgcatttgggatacttaatttgaatg |
13792432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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