View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_6 (Length: 393)
Name: NF0033_low_6
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_6 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 43435292 - 43435572
Alignment:
| Q |
1 |
gcattatttcaaggtctgattgggatgatatggttgagaatgaactggagaaggttaaaattcagctttcggataatttcatgattagggttatgaaaga |
100 |
Q |
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| T |
43435292 |
gcattatttcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggttatgaaaga |
43435391 |
T |
|
| Q |
101 |
gcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctaga |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435392 |
gcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctaga |
43435491 |
T |
|
| Q |
201 |
gttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatctt |
281 |
Q |
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| T |
43435492 |
gttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtgtcggtcatgaattggatctt |
43435572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 43426789 - 43427068
Alignment:
| Q |
3 |
attatttcaaggtctgattgggatgatatggttgagaatgaactggagaaggttaaaattcagctttcggataatttcatgattagggttatgaaagagc |
102 |
Q |
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| T |
43426789 |
attatttcagggtctgattgggacaatgagattgagaatgaactcgagaaggttaaaattcaactttcggacaatttcgtgattagggttatgaaagagc |
43426888 |
T |
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| Q |
103 |
ttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctagagt |
202 |
Q |
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| T |
43426889 |
ttcgaaatagtcctttaaaggcttataagttttttcattgggttggaaagcaatctggttatctacagaatacagtgacttataatgcagttgctagagt |
43426988 |
T |
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| Q |
203 |
tcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttg |
282 |
Q |
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| T |
43426989 |
tcttcctagaatggagtcaattgagaagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttg |
43427068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 73 - 281
Target Start/End: Original strand, 43443558 - 43443766
Alignment:
| Q |
73 |
ataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaa |
172 |
Q |
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| T |
43443558 |
ataatttcgtgattagggttatgaaagagcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaa |
43443657 |
T |
|
| Q |
173 |
tacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaa |
272 |
Q |
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| T |
43443658 |
tacagtgacttataatgcagttgctagagttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtgtcggtcatgaa |
43443757 |
T |
|
| Q |
273 |
ttggatctt |
281 |
Q |
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||||||||| |
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| T |
43443758 |
ttggatctt |
43443766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 67 - 262
Target Start/End: Original strand, 43422275 - 43422470
Alignment:
| Q |
67 |
tttcggataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatca |
166 |
Q |
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||||||||| ||| |||| ||||| |||||||||||||| |||| ||||||| ||| || |||||| |||||||||||||||||||||||||||| |
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| T |
43422275 |
tttcggatagttttgtgatacgggttttgaaagagcttcgaagttgtcctttaaagggttacaactttttttattgggttgggaagcaatctggttatca |
43422374 |
T |
|
| Q |
167 |
acagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgt |
262 |
Q |
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||| ||| | |||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43422375 |
acataatgctgtgacttacaatgcagttgctagagttcttgctaggatggattcaattgaggagttttggagtattcttgcggagatgaagagtgt |
43422470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 20787 - 21048
Alignment:
| Q |
13 |
ggtctgattgggatgatatggttgagaatgaactggagaaggttaaaattcagctttcggataatttcatgattagggttatgaaagagcttcgagaaag |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| || |
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| T |
20787 |
ggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattc---tttcggataatttcgtgattagggtcatgaaagagcttcgagatag |
20883 |
T |
|
| Q |
113 |
tcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctagagttcttccaagg |
212 |
Q |
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||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| || |
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| T |
20884 |
tcctttaaaggcttataagttttttcattgggttggaaagaaatctagttatcaacggaatacagttacttataatgcagttgctagagttcttcctaga |
20983 |
T |
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| Q |
213 |
atggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaattgga |
277 |
Q |
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| T |
20984 |
gtggagtcaattgaagagttttggagtattcttgaggagacgaagagtgtctgtcatgaattgga |
21048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 112 - 280
Target Start/End: Complemental strand, 40186396 - 40186231
Alignment:
| Q |
112 |
gtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctagagttcttccaag |
211 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| ||||||||| | | |
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| T |
40186396 |
gtcctttaaaggcttacaagttttttcattgggttgggaagcaatctggttatcaacataataccgtgacttacaattatgttgcaagagttcttgctaa |
40186297 |
T |
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| Q |
212 |
gatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatct |
280 |
Q |
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|||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
40186296 |
gatggactcaattgaggagttttggagta---tcgaggagatgaagagtgtcggtcatgaattggatct |
40186231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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