View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_8 (Length: 374)
Name: NF0033_low_8
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 11328318 - 11328660
Alignment:
| Q |
21 |
catcctctaataccccaaccaatttgcnnnnnnncttatctgtgtttctgccaccccattcaatgttttctttaagtgttccttggtctttacacagttt |
120 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11328318 |
catcctctaataccccaaccaatttgctttttttcttatccgtgtttctgccaccccattcaatgttttctttaagtgttccttggtctttacacagttt |
11328417 |
T |
|
| Q |
121 |
caatgcaccaaacattcctttccctagagcaacttcgcgtatagtttcatatgaaactatttcctccgtgtcttctgagttaagttgctcgttcttttga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11328418 |
caatgcaccaaacattcctttccctagagcaacttcgcgtatagtttcatatgaaactatttcctccgtgtcttctgagttaagttgctcgttcttttga |
11328517 |
T |
|
| Q |
221 |
gtttctttaacttcagtccactcaccagcctcatctttcgtttccttagccgaaacatctgcttcttcatcatcatgcatgataacatcttcatcttcac |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11328518 |
gtttctttaacttcagtccactcaccagcctcatctttcgtttccttagccgaaacatctg---cttcatcatcatgcatgataacatcttcatcttcac |
11328614 |
T |
|
| Q |
321 |
gtgcatcttcatcgatgtgaagacccttgacaaattccttcatctc |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11328615 |
gtgcatcttcatcgatgtgaagacccttgacaaattccttcatctc |
11328660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 11486339 - 11486681
Alignment:
| Q |
21 |
catcctctaataccccaaccaatttgcnnnnnnncttatctgtgtttctgccaccccattcaatgttttctttaagtgttccttggtctttacacagttt |
120 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11486339 |
catcctctaataccccaaccaatttgctttttttcttatccgtgtttctgccaccccattcaatgttttctttaagtgttccttggtctttacacagttt |
11486438 |
T |
|
| Q |
121 |
caatgcaccaaacattcctttccctagagcaacttcgcgtatagtttcatatgaaactatttcctccgtgtcttctgagttaagttgctcgttcttttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11486439 |
caatgcaccaaacattcctttccctagagcaacttcgcgtatagtttcatatgaaactatttcctccgtgtcttctgagttaagttgctcgttcttttga |
11486538 |
T |
|
| Q |
221 |
gtttctttaacttcagtccactcaccagcctcatctttcgtttccttagccgaaacatctgcttcttcatcatcatgcatgataacatcttcatcttcac |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11486539 |
gtttctttaacttcagtccactcaccagcctcatctttcgtttccttagccgaaacatctg---cttcatcatcatgcatgataacatcttcatcttcac |
11486635 |
T |
|
| Q |
321 |
gtgcatcttcatcgatgtgaagacccttgacaaattccttcatctc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11486636 |
gtgcatcttcatcgatgtgaagacccttgacaaattccttcatctc |
11486681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 37374278 - 37374570
Alignment:
| Q |
21 |
catcctctaataccccaaccaatttgcnnnnnnncttatctgtgtttctgccaccccattcaatgttttctttaagtgttccttggtctttacacagttt |
120 |
Q |
| |
|
||||||||| | |||||||||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||| | |||||| |||||| |
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| T |
37374278 |
catcctctacaatcccaaccaatttgctttttttcttatccatgtttctgccaccccattcaacgctttctttaagtgttcctcgatctttaagcagttt |
37374377 |
T |
|
| Q |
121 |
caatgcaccaaacattcctttccctagagcaacttcgcgtatagtttcatatgaaactatttcctccgtgtcttctgagttaagttgctcgttcttttga |
220 |
Q |
| |
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|||||| ||| ||| ||||||||||| ||||||||| |||||||||||| | |||||| |||||| ||||||||||||| ||||||||| ||||| |
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| T |
37374378 |
caatgctccagacagtcctttccctacagcaacttcatgtatagtttcatcaggaactatctcctccttgtcttctgagttgggttgctcgtctatttga |
37374477 |
T |
|
| Q |
221 |
gtttctttaacttcagtccactcaccagcctcatctttcgtttccttagccgaaacatctgcttcttcatcatcatgcatgataacatcttca |
313 |
Q |
| |
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||||| ||||||||||||||| |||||||||| || ||| |||||| | | | |||| ||| ||||| ||||| | ||||| |||||||||| |
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| T |
37374478 |
gtttcattaacttcagtccacccaccagcctcgtcattcttttcctcaacaggaacaggtgcctcttcgtcatcttccatgaaaacatcttca |
37374570 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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