View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0033_low_9 (Length: 353)
Name: NF0033_low_9
Description: NF0033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0033_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 97 - 340
Target Start/End: Original strand, 39579431 - 39579674
Alignment:
| Q |
97 |
agacctctagcagcaccaatacaaatctcaagcctttgcttccaagtcaaaaaactaggcaaacttttattgtacaaattctctttaagtgtcccttttt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39579431 |
agacctctagcagcaccaatacaaatctcaagcctttgcttccaagtcaaaaaactaggcaaacttttattgtacaaattctctttaagtgtcccttttt |
39579530 |
T |
|
| Q |
197 |
ccatatattcataaacaagtatcatctcatacccttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39579531 |
ccatatattcataaacaagtatcatctcatacccttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctc |
39579630 |
T |
|
| Q |
297 |
agcttcaaattcaggaagtccttgacctgaccctggcacccttc |
340 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39579631 |
agcttcaaattcaggaagtccttgacctgaccccggcacccttc |
39579674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 97 - 333
Target Start/End: Original strand, 39509998 - 39510234
Alignment:
| Q |
97 |
agacctctagcagcaccaatacaaatctcaagcctttgcttccaagtcaaaaaactaggcaaacttttattgtacaaattctctttaagtgtcccttttt |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |||||| | |||||||||||||| |||| |
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| T |
39509998 |
agacctctagcagcaccaatacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgcaccttacaaactttctttaagtgtcccctttt |
39510097 |
T |
|
| Q |
197 |
ccatatattcataaacaagtatcatctcatacccttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctc |
296 |
Q |
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|||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
39510098 |
ccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgtcgatgacgaatctttgacaaaaccattatctc |
39510197 |
T |
|
| Q |
297 |
agcttcaaattcaggaagtccttgacctgaccctggc |
333 |
Q |
| |
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|| | ||||||||| ||||||||||||||||||||| |
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| T |
39510198 |
agtctgaaattcaggtagtccttgacctgaccctggc |
39510234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 97 - 340
Target Start/End: Original strand, 39574898 - 39575138
Alignment:
| Q |
97 |
agacctctagcagcaccaatacaaatctcaagcctttgcttccaagtcaaaaaactaggcaaacttttattgtacaaattctctttaagtgtcccttttt |
196 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| || ||| ||||||||| ||| |||||||||| |||| |
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| T |
39574898 |
agacctctagcagcaccaatgcaaatctcaagcctttgcttccaagtcaaacaa---ggcaaatttgtatcgtacaaattatctctaagtgtcccatttt |
39574994 |
T |
|
| Q |
197 |
ccatatattcataaacaagtatcatctcatacccttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctc |
296 |
Q |
| |
|
|||| || || |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39574995 |
ccatgtactcgtaaacaagtatcatctcacacctttcatcacaatatgcaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctc |
39575094 |
T |
|
| Q |
297 |
agcttcaaattcaggaagtccttgacctgaccctggcacccttc |
340 |
Q |
| |
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|| || ||||||| || ||||||||||||| |||||||| |||| |
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| T |
39575095 |
agtttgaaattcatgacgtccttgacctgaacctggcacgcttc |
39575138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 97 - 340
Target Start/End: Original strand, 39543063 - 39543303
Alignment:
| Q |
97 |
agacctctagcagcaccaatacaaatctcaagcctttgcttccaagtcaaaaaactaggcaaacttttattgtacaaattctctttaagtgtcccttttt |
196 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| || ||||||| |||||||| ||||||| || |||| |
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| T |
39543063 |
agacctctagcagcaccaatgcaaatctcaagcctttgcttccaagtcaaacaa---ggcaaatttgtattgtataaattctccctaagtgtaccatttt |
39543159 |
T |
|
| Q |
197 |
ccatatattcataaacaagtatcatctcatacccttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctc |
296 |
Q |
| |
|
|||| || ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
39543160 |
ccatgtactcataaacaagtatcatctcacacctttcatcacaataccctattaaggaaacaaggtgtttgtgacgaatcttggacagaaccattatctc |
39543259 |
T |
|
| Q |
297 |
agcttcaaattcaggaagtccttgacctgaccctggcacccttc |
340 |
Q |
| |
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|| || ||||||| | ||||||||||||| || ||||| |||| |
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| T |
39543260 |
agtttgaaattcatgttgtccttgacctgaacccggcacacttc |
39543303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 182 - 333
Target Start/End: Original strand, 39520341 - 39520492
Alignment:
| Q |
182 |
taagtgtccctttttccatatattcataaacaagtatcatctcatacccttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttgga |
281 |
Q |
| |
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|||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
39520341 |
taagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatcttgga |
39520440 |
T |
|
| Q |
282 |
caaaaccattatctcagcttcaaattcaggaagtccttgacctgaccctggc |
333 |
Q |
| |
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||||||||||||||||| | ||||||||| || ||||||||||| |||||| |
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| T |
39520441 |
caaaaccattatctcagtctgaaattcaggcagaccttgacctgatcctggc |
39520492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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