View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0034_high_1 (Length: 673)
Name: NF0034_high_1
Description: NF0034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0034_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 78 - 662
Target Start/End: Complemental strand, 5612044 - 5611455
Alignment:
| Q |
78 |
acatttgatatgtttcgaaaattcagataatccaataacatattctaacacccactacacatacttcttattaaactcatgtaatgttttatacttgtat |
177 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
5612044 |
acatttgatatgattcgaaaattcagataatccaataacatattctaacacccactacacatactttttattaaactcgtgtaatgttttatacttgtat |
5611945 |
T |
|
| Q |
178 |
nnnnnnn-ttggaattctactcattatatatt----ggaggtatcnnnnnnnnnnnnnnnnnnnnnnnagcataagactaatttatctaccaactctcca |
272 |
Q |
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| T |
5611944 |
aaaagaaattggaattctactcattatatattggagggaggtatcattttattttattttcattttttagcataagactaatttatctaccaactctcca |
5611845 |
T |
|
| Q |
273 |
acatagagattcagtagaatctaaaagaggtcatatgttttttgagagtaaccaaccagggggatcaagtcaacct-agcatgtgaatatgcactcattc |
371 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5611844 |
acccagagattcagtagaatctaaaagaggacatatgttttttgagagtaaccaacgagggggatcaagtcaaccttagcatgtgaatatgcactcattc |
5611745 |
T |
|
| Q |
372 |
aaacacaaacttcgatggatttgatgaaattattttgcaacaatcattttatgttcttatagtgacctcacacataataatatttgttactataaagcat |
471 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5611744 |
aaacacaaacttcgatggatttgatgaatttattttgcaacaatcattttatgttcttatagtgacctcacacataataatatttgttactataaagcat |
5611645 |
T |
|
| Q |
472 |
gtgattaggtaggttaggaagtatcttacacatgcttgcaatcttaatataaacacaagatacaatcttattcaaacttcttataatgtactatagannn |
571 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5611644 |
gtgattaggtaggttaggaagtatcttacacatgcttgcaatcttaaaataaacacaagatacaatcttattcaaacttcttataatgtactataga-tt |
5611546 |
T |
|
| Q |
572 |
nnnngtagtatactagacatgattaataacataatattcctttttccctttaataatgattcttttccattgtgaaattagtggggttcat |
662 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |
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| T |
5611545 |
ttttgtagtatactagacatgattaataacataatattcctttttccctttaattatgattcttttccattgtgcaattaatggggttcat |
5611455 |
T |
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