View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0034_low_3 (Length: 377)
Name: NF0034_low_3
Description: NF0034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0034_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 41298001 - 41298333
Alignment:
| Q |
30 |
agactgtgatgacatctggggtagagaacataacaagcggtgttgttatggccacaaaaggttcaatatttggcgaattaccaacactggtggctgggaa |
129 |
Q |
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| T |
41298001 |
agactgtgatgacatctggggtagagaacataacaagcggtgctgttatggccacaaaaggttcaaagtttggccaattaccaacactggtggctggaaa |
41298100 |
T |
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| Q |
130 |
aaacaactttttctcaaagtcgaagggttcgtccgatggaggaaggtgcactcattgtggaaatgtcaaacacactcgtgatacatgtttcaagttacat |
229 |
Q |
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| T |
41298101 |
aaacaactttttctcaaagtcgaagggttcgtctgatggaggaaagtgaactcattgtggaaatgtcagacacactcgtgatacatgtttcaagttacat |
41298200 |
T |
|
| Q |
230 |
gggtatccagaatggtggcatgagctgcaagccaagaagaaaaaagacaacacaacacttgaggaaggcactggtaaagctgctgtagttactgccgagt |
329 |
Q |
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| T |
41298201 |
gggtatccagaatggtggcatgagctgcaagccaagaagaaaaaagacaacacaacacttgaggaaggcactggtaaagctgctgtagttactgccgagt |
41298300 |
T |
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| Q |
330 |
ctcaactctcacttgttcccatggccaatccct |
362 |
Q |
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| T |
41298301 |
ctcaactctcacttgttcccatggccaatccct |
41298333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 15668901 - 15668848
Alignment:
| Q |
200 |
cacactcgtgatacatgtttcaagttacatgggtatccagaatggtggcatgag |
253 |
Q |
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| T |
15668901 |
cacacccgtgacacatgcttcaagttgcatgggtatccagaatggtggaatgag |
15668848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 5864334 - 5864281
Alignment:
| Q |
200 |
cacactcgtgatacatgtttcaagttacatgggtatccagaatggtggcatgag |
253 |
Q |
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| T |
5864334 |
cacacccgtgacacatgcttcaagttgcatgggtatccagaatggtggaatgag |
5864281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 34171318 - 34171265
Alignment:
| Q |
200 |
cacactcgtgatacatgtttcaagttacatgggtatccagaatggtggcatgag |
253 |
Q |
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| T |
34171318 |
cacacccgtgacacatgcttcaagttgcatgggtatccagaatggtggaatgag |
34171265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 526097 - 526026
Alignment:
| Q |
176 |
tgcactcattgtggaaatgtcaaacacactcgtgatacatgtttcaagttacatgggtatccagaatggtgg |
247 |
Q |
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||||||||||||||||| | || || || | ||| || |||||||||||||||||||| |||||||||||| |
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| T |
526097 |
tgcactcattgtggaaagttgaagcatacacatgaaacttgtttcaagttacatgggtacccagaatggtgg |
526026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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