View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0034_low_5 (Length: 318)
Name: NF0034_low_5
Description: NF0034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0034_low_5 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 1595902 - 1596197
Alignment:
| Q |
3 |
atcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgcct |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
1595902 |
atcaaagcaacagaagactttgacatgagatattgcattggaacgggagcatatggaagtgtttacagggcacaattaccaagtggaaaggttgttgcct |
1596001 |
T |
|
| Q |
103 |
taaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
1596002 |
taaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgacatattgt |
1596101 |
T |
|
| Q |
203 |
gaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1596102 |
gaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
1596197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 1105845 - 1106140
Alignment:
| Q |
3 |
atcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgcct |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1105845 |
atcaaagcaacggaagactttgacatgagatattgcattggaactggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgcct |
1105944 |
T |
|
| Q |
103 |
taaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgt |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
1105945 |
taaagaaacttcacggctatgaagtcgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgacatattgt |
1106044 |
T |
|
| Q |
203 |
gaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1106045 |
gaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctatcttgtatgatgatgt |
1106140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 1541786 - 1541489
Alignment:
| Q |
1 |
tcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1541786 |
tcatcaaagcaacagaagacttcgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggaaaggttgttgc |
1541687 |
T |
|
| Q |
101 |
cttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
1541686 |
cttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatatt |
1541587 |
T |
|
| Q |
201 |
gtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
1541586 |
gtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgtatgatgatgt |
1541489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 298
Target Start/End: Original strand, 1088499 - 1088791
Alignment:
| Q |
6 |
aaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaa |
105 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1088499 |
aaagcaacagaggactttgacatgagatattgcattggaacaggagcatatagaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaa |
1088598 |
T |
|
| Q |
106 |
agaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||||| |||||||||||| |
|
|
| T |
1088599 |
agaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcacaaacatattgtgaa |
1088698 |
T |
|
| Q |
206 |
gctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1088699 |
gctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1088791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 1557730 - 1557433
Alignment:
| Q |
1 |
tcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
1557730 |
tcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggtaatgttgttgc |
1557631 |
T |
|
| Q |
101 |
cttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| |||||| |
|
|
| T |
1557630 |
tttaaagaaacttcacggctatgaagctgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcacaaacatatc |
1557531 |
T |
|
| Q |
201 |
gtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1557530 |
gtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatatatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1557433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 1604237 - 1604527
Alignment:
| Q |
8 |
agcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaag |
107 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1604237 |
agcaacggaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaag |
1604336 |
T |
|
| Q |
108 |
aaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagc |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1604337 |
aaacttcacggctatgaagaagaggttccatcttttgatgagagtttcaaaaatgaagtgaaaatattatcagaaataaagcaccgacatattgtgaagc |
1604436 |
T |
|
| Q |
208 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1604437 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1604527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 298
Target Start/End: Complemental strand, 1551015 - 1550723
Alignment:
| Q |
6 |
aaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1551015 |
aaagcaacagaagactttgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgtcgccttaa |
1550916 |
T |
|
| Q |
106 |
agaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaa |
205 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
1550915 |
agaaacttcatggctatgaagcagacgttccatcttttgatgagagtttcagaaatgaagtgagaatattgacagaaataaagcaccgacatattgtgaa |
1550816 |
T |
|
| Q |
206 |
gctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
1550815 |
gcttcatggattctgcttgcacaagagaatcatgtttttgatctatcagtacatggagagaggaagcttgttcactgtcttgtatgacgatgt |
1550723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 2329534 - 2329828
Alignment:
| Q |
1 |
tcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
2329534 |
tcattaaagcaacagaagactttgacattagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttgttgc |
2329633 |
T |
|
| Q |
101 |
cttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatatt |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
2329634 |
aataaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagatataaagcaccggcatatc |
2329733 |
T |
|
| Q |
201 |
gtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatga |
295 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
2329734 |
gtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctgtcttgtatgatga |
2329828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 2321043 - 2321332
Alignment:
| Q |
8 |
agcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaag |
107 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |
|
|
| T |
2321043 |
agcaacggaagattttgacattagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttgttgccttgaag |
2321142 |
T |
|
| Q |
108 |
aaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagc |
207 |
Q |
| |
|
|||||||||||||||||||| ||| | ||| |||||||||| ||||| ||||| |||||||| |||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
2321143 |
aaacttcacggctatgaagcagagctgccagcttttgatgaaagttttagaaatgaagtgagaatattatcagaaataaagcaccgaaatattgtgaagc |
2321242 |
T |
|
| Q |
208 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatg |
297 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
2321243 |
tttatggattttgcttgcacaaaagaatcatgtttttgatctaccattacatggagagaggaagtttgttctccgtcttgtatgatgatg |
2321332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 2337438 - 2337727
Alignment:
| Q |
6 |
aaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaa |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||| |
|
|
| T |
2337438 |
aaagcaacagaagactttgacattagatattgcattgggacaggagcatatggaagtgtttataaggcacaattaccatgtggaaaagttgttgcaataa |
2337537 |
T |
|
| Q |
106 |
agaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaa |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2337538 |
agaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgaaaatattatcagatataaagcaccgacatatcgtgaa |
2337637 |
T |
|
| Q |
206 |
gctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatga |
295 |
Q |
| |
|
||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
2337638 |
gctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctggcttgtatgatga |
2337727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 3955771 - 3955480
Alignment:
| Q |
8 |
agcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaag |
107 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||| |||| |
|
|
| T |
3955771 |
agcaacaaaagactttgacattaaatattgcattggaaaaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaatttgttgcactaaaa |
3955672 |
T |
|
| Q |
108 |
aaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagc |
207 |
Q |
| |
|
|||||||| |||| ||||| ||||| |||||| ||||||| ||||| ||||| ||||||| |||||||||||| |||||||| || |||||||||||| |
|
|
| T |
3955671 |
aaacttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagc |
3955572 |
T |
|
| Q |
208 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgtc |
299 |
Q |
| |
|
|||||||||| || ||||| |||||| | |||||||||||||||||||| ||||| ||||||||| ||||||| |||||| ||||||||||| |
|
|
| T |
3955571 |
tttatggattttgtttgcataaaagagttatgtttttgatctatcagtatatggaaaaaggaagcttgttctccgtcttgcatgatgatgtc |
3955480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 298
Target Start/End: Complemental strand, 9532366 - 9532075
Alignment:
| Q |
6 |
aaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaa |
105 |
Q |
| |
|
||||||| | || |||||||||| ||||||||||| | |||||||||||||||||||| |||||| | ||||||||||||| ||| ||||| ||||||| |
|
|
| T |
9532366 |
aaagcaatacaacactttgacattagatattgcatatggacaggagcatatggaagtgtatacaagactcaattaccatgtgacaaagttgtcgccttaa |
9532267 |
T |
|
| Q |
106 |
agaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaa |
205 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||||||||| |||||||| ||| |||| ||| ||||||| | || |||| ||| | ||||||| || |
|
|
| T |
9532266 |
agaaacttcacatctatgaagcagaggtgccatcttttgatgcgagtttcaaaaatgaagcgagaatattataaaaaataaatcacataaatattgttaa |
9532167 |
T |
|
| Q |
206 |
gctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
|||||||||||| || ||| |||||||||||||||||||||||||||| ||| | ||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
9532166 |
gctttatggattatgattgtacaaaagaatcatgtttttgatctatcaatacgt-gagaaaggaagtttgttctcgtttttgtatgatgatgt |
9532075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 298
Target Start/End: Original strand, 30792154 - 30792447
Alignment:
| Q |
6 |
aaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaa |
105 |
Q |
| |
|
||||||||| || |||||||||| ||||||| ||| | ||| ||| | ||| |||||| |||||| | || ||| |||||||||| |||||||||||| |
|
|
| T |
30792154 |
aaagcaacataacactttgacattagatattacatcgagacatgaggacatgaaagtgtatacaagactcatttatcatgtggcaaagttgttgccttat |
30792253 |
T |
|
| Q |
106 |
agaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaa |
205 |
Q |
| |
|
||||||||||| ||||||| | | || ||||||||| | ||||||| ||| |||||||| ||||||||| || |||||||| | ||||||| || |
|
|
| T |
30792254 |
agaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataaatattgttaa |
30792353 |
T |
|
| Q |
206 |
gctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||||||||||||| ||| | |||||| ||||| ||||| ||| |||||||||||||| |
|
|
| T |
30792354 |
gctttatagattctgcttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgttttgtatgatgatgt |
30792447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 1436 - 1139
Alignment:
| Q |
1 |
tcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1436 |
tcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgc |
1337 |
T |
|
| Q |
101 |
cttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatatt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
1336 |
cttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatatt |
1237 |
T |
|
| Q |
201 |
gtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1236 |
gtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 298
Target Start/End: Complemental strand, 6321 - 6026
Alignment:
| Q |
3 |
atcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgcct |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6321 |
atcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgcct |
6222 |
T |
|
| Q |
103 |
taaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgt |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| ||||| |||||||| |||||| || |
|
|
| T |
6221 |
taaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaacatatcgt |
6122 |
T |
|
| Q |
203 |
gaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| | ||||||||||||||||||||||| |
|
|
| T |
6121 |
gaagctttatggtttctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgt |
6026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 18739557 - 18739260
Alignment:
| Q |
1 |
tcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18739557 |
tcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgc |
18739458 |
T |
|
| Q |
101 |
cttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatatt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
18739457 |
cttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatatt |
18739358 |
T |
|
| Q |
201 |
gtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18739357 |
gtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
18739260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 18744521 - 18744224
Alignment:
| Q |
1 |
tcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18744521 |
tcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgc |
18744422 |
T |
|
| Q |
101 |
cttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatatt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
18744421 |
cttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatatt |
18744322 |
T |
|
| Q |
201 |
gtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18744321 |
gtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
18744224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 298
Target Start/End: Complemental strand, 18749480 - 18749185
Alignment:
| Q |
3 |
atcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgcct |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18749480 |
atcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgcct |
18749381 |
T |
|
| Q |
103 |
taaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgt |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| ||||| |||||||| ||||||||| |
|
|
| T |
18749380 |
taaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaacatattgt |
18749281 |
T |
|
| Q |
203 |
gaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| | ||||||||||||||||||||||| |
|
|
| T |
18749280 |
gaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgt |
18749185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 3 - 298
Target Start/End: Complemental strand, 18723828 - 18723533
Alignment:
| Q |
3 |
atcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgcct |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18723828 |
atcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgcct |
18723729 |
T |
|
| Q |
103 |
taaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgt |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| ||||| |||||||| |||||| || |
|
|
| T |
18723728 |
taaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaacatatagt |
18723629 |
T |
|
| Q |
203 |
gaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| | ||||||||||||||||||||||| |
|
|
| T |
18723628 |
gaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgt |
18723533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 18733045 - 18732996
Alignment:
| Q |
139 |
cttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaag |
188 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||| |||||||||||| ||||| |
|
|
| T |
18733045 |
cttttgattagagttttagaaatgaagtgagaatattatcagaaataaag |
18732996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 6 - 298
Target Start/End: Original strand, 19250256 - 19250547
Alignment:
| Q |
6 |
aaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaa |
105 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||| |||||| |||||| |||||| |||||| | | |||||||||||| || ||||| || |||| |
|
|
| T |
19250256 |
aaagcaacacaacactttgacattagatattgcatcatgacaggatcatatgaaagtgtatacaagactcgattaccatgtggtaaagttgtcgctttaa |
19250355 |
T |
|
| Q |
106 |
agaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaa |
205 |
Q |
| |
|
||||| ||||| |||||||| || || || |||||||||| ||||||||||| |||||||| ||||||||| | |||| ||| | ||||||| || |
|
|
| T |
19250356 |
agaaatttcacaactatgaagtagatgtgccgtcttttgatgcgagtttcagaattgaagtgagaatattatcatatataaaacacataaatattgttaa |
19250455 |
T |
|
| Q |
206 |
gctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||| ||||||| || |||||||||||||| |
|
|
| T |
19250456 |
gctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacat-gaaaaatgaagcttgttctcggttttgtatgatgatgt |
19250547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 41669093 - 41668820
Alignment:
| Q |
19 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
118 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
41669093 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
41668994 |
T |
|
| Q |
119 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagctttatggattc |
218 |
Q |
| |
|
||||||||| || || |||||||||||| ||||||||||| ||||||| ||||||| | || ||||||| | ||||||| |||||||||||||| |
|
|
| T |
41668993 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcagaattgaagtgaaaatattataaaaaataaagcagataaatattgttaagctttatggattt |
41668894 |
T |
|
| Q |
219 |
tgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatga |
292 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||| | |||| ||| ||||||| || |||||||| |
|
|
| T |
41668893 |
tgcttgcacaaaagaataatgtttttaatctatcgatacatgaaaaaagaaagtttgttctcagttttgtatga |
41668820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 42978019 - 42977746
Alignment:
| Q |
19 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
118 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
42978019 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
42977920 |
T |
|
| Q |
119 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagctttatggattc |
218 |
Q |
| |
|
||||||||| || || |||||||||||| || |||||||| |||||||| ||||||||| || ||||||| | ||||||| |||||||||||||| |
|
|
| T |
42977919 |
ctatgaagcagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
42977820 |
T |
|
| Q |
219 |
tgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatga |
292 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| | |||| ||| ||||||| || |||||||| |
|
|
| T |
42977819 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttgtatga |
42977746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 54122784 - 54123056
Alignment:
| Q |
19 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
118 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
54122784 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
54122883 |
T |
|
| Q |
119 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagctttatggattc |
218 |
Q |
| |
|
||||||||| || || |||||||||||| |||||||| || |||||||| ||||||| | || ||||||| | |||| | ||||||||| ||| |
|
|
| T |
54122884 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcacaattgaagtgagaatattataaaaaataaagcagataaatatctttaagctttatatattt |
54122983 |
T |
|
| Q |
219 |
tgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| | |||| ||| ||||||| || ||||||| |
|
|
| T |
54122984 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcagttttgtatg |
54123056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 48712677 - 48712437
Alignment:
| Q |
19 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
118 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
48712677 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
48712578 |
T |
|
| Q |
119 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagctttatggattc |
218 |
Q |
| |
|
|||| |||| || || | |||||||||| || |||||||| |||||||| ||||||||| || |||| || | ||||||| |||||||||||||| |
|
|
| T |
48712577 |
ctattaagcagatgtgtcttcttttgatgcgattttcagaattgaagtgagaatattatcaaaaataaa-cagataaatattgttaagctttatggattt |
48712479 |
T |
|
| Q |
219 |
tgcttgcacaaaagaatcatgtttttgatctatcagtacatg |
260 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| |||||| |
|
|
| T |
48712478 |
tgcttgcacaaaagaatcatattttcaatctatcaatacatg |
48712437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 16880145 - 16880331
Alignment:
| Q |
6 |
aaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaa |
105 |
Q |
| |
|
|||| |||| || |||||||||| ||||||||||| || ||| |||||||||||||||| |||||| | | |||||||| | |||| |||| ||||||| |
|
|
| T |
16880145 |
aaagaaacacaacactttgacattagatattgcatcggcacaagagcatatggaagtgtatacaagactcgattaccatcttgcaaagttgccgccttaa |
16880244 |
T |
|
| Q |
106 |
agaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaa-gtgaggatattatcagaattaaagcac |
191 |
Q |
| |
|
||||| ||||| |||||||| | || |||||||||||| |||||||||||| ||| ||||| |||||||||||| |||||||| |
|
|
| T |
16880245 |
agaaatttcacaactatgaagtaaaagtgtcatcttttgatgcgagtttcagaaatgaatgtgagaatattatcagaaataaagcac |
16880331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 31657883 - 31658124
Alignment:
| Q |
19 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
118 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||| |||||||||| |||||| | |||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
31657883 |
actttgacattagatattgcatcgtgacataagcacatggaagtgtatacaagactcaattatcatgtggcaaatttgtcaccttaaagaaacttcacaa |
31657982 |
T |
|
| Q |
119 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagctttatggattc |
218 |
Q |
| |
|
||| ||| || || |||||||||||| || |||||||| |||||||| ||||||||| || ||||||| | ||||||| |||||||||||||| |
|
|
| T |
31657983 |
ctacgaaatagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
31658082 |
T |
|
| Q |
219 |
tgcttgcacaaaagaatcatgtttttgatctatcagtacatg |
260 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
31658083 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatg |
31658124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 50 - 260
Target Start/End: Original strand, 36620505 - 36620712
Alignment:
| Q |
50 |
agcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgag |
149 |
Q |
| |
|
||||||||||||| | |||||| | |||||| |||||||||| ||| ||||||||||||||||| |||| |||| || || ||||||||||| | |
|
|
| T |
36620505 |
agcatatggaagtttatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaactattaagcagatgt---atcttttgatgcg |
36620601 |
T |
|
| Q |
150 |
agtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatct |
249 |
Q |
| |
|
|||||||||| |||||||| ||||||||| || ||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
36620602 |
agtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatct |
36620701 |
T |
|
| Q |
250 |
atcagtacatg |
260 |
Q |
| |
|
|||| |||||| |
|
|
| T |
36620702 |
atcaatacatg |
36620712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 8873340 - 8873098
Alignment:
| Q |
19 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
118 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| |||||| | |||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
8873340 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgcgaccttaaagaaacttcacaa |
8873241 |
T |
|
| Q |
119 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagctttatggattc |
218 |
Q |
| |
|
||||||||| || || |||| ||||||| |||||||||| |||||||| ||||||| | || ||||||| | ||||| | |||||||||||||| |
|
|
| T |
8873240 |
ctatgaagcagatgtgtcatcgtttgatgccagtttcagaattgaagtgagaatattataaaaaataaagcagataaatattattaagctttatggattt |
8873141 |
T |
|
| Q |
219 |
t-gcttgcacaaaagaatcatgtttttgatctatcagtacatg |
260 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
8873140 |
ttgcttgcacaaaagaatcatgtttttaatctatcaatacatg |
8873098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 50 - 260
Target Start/End: Complemental strand, 39102501 - 39102292
Alignment:
| Q |
50 |
agcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgag |
149 |
Q |
| |
|
||||||||||||| | |||||| | |||||| |||||||||| ||| |||||||||| |||||| |||| |||| || || |||||||||||| | |
|
|
| T |
39102501 |
agcatatggaagtttatacaagactcaattatcatgtggcaaatttgcctccttaaagaa-cttcacaactattaagcagatgtgtcatcttttgatgcg |
39102403 |
T |
|
| Q |
150 |
agtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatct |
249 |
Q |
| |
|
||||| |||| |||||||| ||||||||| || ||||||| | ||||||| |||||||||||||| |||||||||||||||| ||||||||| || | |
|
|
| T |
39102402 |
agttttagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaagcatgtttttaatat |
39102303 |
T |
|
| Q |
250 |
atcagtacatg |
260 |
Q |
| |
|
|||| |||||| |
|
|
| T |
39102302 |
atcaatacatg |
39102292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 1257677 - 1257950
Alignment:
| Q |
19 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgttgccttaaagaaacttcacgg |
118 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||||||| |||||| |||||| | |||||| |||||||| | ||| ||||||||||||||||| |
|
|
| T |
1257677 |
actttgacattagatattgcatcgtgacataagcatatgaaagtgtatacaagactcaattatcatgtggccaatttgccaccttaaagaaacttcacaa |
1257776 |
T |
|
| Q |
119 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgaggatattatcagaattaaagcaccgacatattgtgaagctttatggattc |
218 |
Q |
| |
|
|||||||| || || ||| |||||||| ||||||||||| |||||||| ||||||||| || ||||||| | ||||||| || ||||||| ||| |
|
|
| T |
1257777 |
atatgaagcagatgtgtcattttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaaactttatgaattt |
1257876 |
T |
|
| Q |
219 |
tgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatga |
292 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| |||||| | |||| ||| ||||||| || |||||||| |
|
|
| T |
1257877 |
tgtttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttgtatga |
1257950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 696 times since January 2019
Visitors: 1103