View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0042_high_2 (Length: 573)

Name: NF0042_high_2
Description: NF0042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0042_high_2
NF0042_high_2
[»] chr4 (5 HSPs)
chr4 (12-250)||(19109904-19110142)
chr4 (73-249)||(45098941-45099118)
chr4 (470-536)||(19110361-19110427)
chr4 (470-536)||(45099348-45099417)
chr4 (25-70)||(45098870-45098915)
[»] chr2 (2 HSPs)
chr2 (14-250)||(29466531-29466767)
chr2 (470-536)||(29467003-29467069)
[»] scaffold0726 (2 HSPs)
scaffold0726 (12-250)||(3632-3870)
scaffold0726 (470-536)||(4105-4171)
[»] scaffold0557 (2 HSPs)
scaffold0557 (12-250)||(8467-8692)
scaffold0557 (470-536)||(8167-8233)
[»] chr6 (4 HSPs)
chr6 (85-250)||(18717299-18717464)
chr6 (470-536)||(14465166-14465232)
chr6 (470-536)||(18716999-18717065)
chr6 (211-250)||(14465466-14465505)
[»] chr8 (1 HSPs)
chr8 (470-536)||(7963169-7963236)
[»] chr1 (2 HSPs)
chr1 (141-226)||(42956217-42956302)
chr1 (470-536)||(12227820-12227889)
[»] chr5 (1 HSPs)
chr5 (141-226)||(11232829-11232914)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 19109904 - 19110142
Alignment:
Q  12 atgaacgaggagggaggatattacaacaggaaacaaaaatgtgcattttgaaagtaatatgtatacttcaatgttatgagagggactcatatgacaatgg 111  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19109904 atgaacgaggagggaggatattacaacatgaaacaaaaatgagcatattgaaagtaatatgtatacttcaatgttatgagagggactcatatgacaatgg 19110003  T
Q  112 ttctaaaggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaatgtgcatctcacttaaattaccatctatttcaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19110004 ttctaaaggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaatgtgcatctcacttaaattaccatctatttcaa 19110103  T
Q  212 gtgttcaattattttcaactctcaattactcattttttg 250  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  19110104 gtgttcaattattttcaactgtcaattgctcattttttg 19110142  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 73 - 249
Target Start/End: Original strand, 45098941 - 45099118
Alignment:
Q  73 tatacttcaatgttatgagagggactcatatgacaatggttctaaaggatctcatattatcttaactataaatttgtaaacattgat--agtgactattc 170  Q
    |||||||||||||||||||||||||||||||| ||||||||  || ||||||||| |||||||||| |||||||||||||||||||   | |||||||||    
T  45098941 tatacttcaatgttatgagagggactcatatgccaatggttggaa-ggatctcatgttatcttaacgataaatttgtaaacattgactaactgactattc 45099039  T
Q  171 ttcaacaatgtgcatctcacttaaattaccatctatttcaagtgttcaattattttcaactctcaattactcatttttt 249  Q
    |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  45099040 ttcaacaacgtgcatctcacttcaattaccatctatttcaagttttcaattattttcaactgtcaattactcatttttt 45099118  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 19110361 - 19110427
Alignment:
Q  470 gtttactactgtcattattaatgttggtgtattttttatacctttctaatatatggttaaatgtaac 536  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19110361 gtttactactgtcattattaatgttggtgcattttttatacctttctaatatatggttaaatgtaac 19110427  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 45099348 - 45099417
Alignment:
Q  470 gtttactactgtcattattaatgttggtgtattttttatacctttcta---atatatggttaaatgtaac 536  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||   |||| ||||||||||||||    
T  45099348 gtttattactgtcattattaatgttggtgcattttttatacctttctaaatatatttggttaaatgtaac 45099417  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 45098870 - 45098915
Alignment:
Q  25 gaggatattacaacaggaaacaaaaatgtgcattttgaaagtaata 70  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||    
T  45098870 gaggatattacaacaggaaacaaaaatatgcagattgaaagtaata 45098915  T

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Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 29466531 - 29466767
Alignment:
Q  14 gaacgaggagggaggatattacaacaggaaacaaaaatgtgcattttgaaagtaatatgtatacttcaatgttatgagagggactcatatgacaatggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  29466531 gaacgaggagggaggatattacaacaggaaacaaaaatgtgcagattgaaagtaatatgtatacttcaatgttatgagagggactcatataacaacggtt 29466630  T
Q  114 ctaaaggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaatgtgcatctcacttaaattaccatctatttcaagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |    
T  29466631 ctaaaggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtgcatctcacttcaattaccatctatttcaatt 29466730  T
Q  214 gttcaattattttcaactctcaattactcattttttg 250  Q
    |||||||||||||||||| ||||||||||||||||||    
T  29466731 gttcaattattttcaactgtcaattactcattttttg 29466767  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 29467003 - 29467069
Alignment:
Q  470 gtttactactgtcattattaatgttggtgtattttttatacctttctaatatatggttaaatgtaac 536  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  29467003 gtttactactgtcattgttaatgttggtgcattttttatacctttttaatatatggttaaatataac 29467069  T

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Target: scaffold0726 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 3632 - 3870
Alignment:
Q  12 atgaacgaggagggaggatattacaacaggaaacaaaaatgtgcattttgaaagtaatatgtatacttcaatgttatgagagggactcatatgacaatgg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  3632 atgaacgaggagggaggatattacaacaggaaacaaaaatgtgcagattgaaagtaatatgtgtacttcaatgttatgagaggtactcatatgacaatgg 3731  T
Q  112 ttctaaaggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaatgtgcatctcacttaaattaccatctatttcaa 211  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||    
T  3732 ttctaaaggatcttatattatcttaattataaatttgtaaacattgatagtgactatttttcaacaacgtgcatctcactttaattaccatctatttcaa 3831  T
Q  212 gtgttcaattattttcaactctcaattactcattttttg 250  Q
    || ||||||||||||||||| ||||||||| ||||||||    
T  3832 gtattcaattattttcaactgtcaattactaattttttg 3870  T

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Target: scaffold0726; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 4105 - 4171
Alignment:
Q  470 gtttactactgtcattattaatgttggtgtattttttatacctttctaatatatggttaaatgtaac 536  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||| ||||||||    
T  4105 gtttactactgtcattattaatgttggtgcattttttatacctttctaatattaggtttaatgtaac 4171  T

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Target: scaffold0557 (Bit Score: 175; Significance: 6e-94; HSPs: 2)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 8692 - 8467
Alignment:
Q  12 atgaacgaggagggaggatattacaacaggaaacaaaaatgtgcattttgaaagtaatatgtatacttcaatgttatgagagggactcatatgacaatgg 111  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||          
T  8692 atgaacgaggagggaggatattacaaccggaaacaaaaatgtgcatattgaaagtaatatgtatacttcaatgttatgagagggactcatatga------ 8599  T
Q  112 ttctaaaggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaatgtgcatctcacttaaattaccatctatttcaa 211  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  8598 -------ggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtgcatctcacttcaattaccatctatttcaa 8506  T
Q  212 gtgttcaattattttcaactctcaattactcattttttg 250  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  8505 gtgttcaattattttcaactatcaattactcattttttg 8467  T

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Target: scaffold0557; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 470 - 536
Target Start/End: Complemental strand, 8233 - 8167
Alignment:
Q  470 gtttactactgtcattattaatgttggtgtattttttatacctttctaatatatggttaaatgtaac 536  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  8233 gtttactactgtcattattaatgttggtgcattttttacacctttctaatatatggttaaatgtaac 8167  T

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Target: chr6 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 85 - 250
Target Start/End: Complemental strand, 18717464 - 18717299
Alignment:
Q  85 ttatgagagggactcatatgacaatggttctaaaggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaatgtgca 184  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18717464 ttatgagagggactcatatgacaatagttctaagggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtgca 18717365  T
Q  185 tctcacttaaattaccatctatttcaagtgttcaattattttcaactctcaattactcattttttg 250  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18717364 tctcacttcaattaccatctatttcaagtgttcaattattttcaactgtcaattactcattttttg 18717299  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 470 - 536
Target Start/End: Complemental strand, 14465232 - 14465166
Alignment:
Q  470 gtttactactgtcattattaatgttggtgtattttttatacctttctaatatatggttaaatgtaac 536  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  14465232 gtttactactgtcattattaatgttggtgcattttttatacctttctaatatatggtcaaatgtaac 14465166  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 470 - 536
Target Start/End: Complemental strand, 18717065 - 18716999
Alignment:
Q  470 gtttactactgtcattattaatgttggtgtattttttatacctttctaatatatggttaaatgtaac 536  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  18717065 gtttactactgtcattattaatgttggtgcattttttatacctttctaatatatggttaaatttaac 18716999  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 14465505 - 14465466
Alignment:
Q  211 agtgttcaattattttcaactctcaattactcattttttg 250  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  14465505 agtgttcaattattttcaactatcaattactcattttttg 14465466  T

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Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 7963169 - 7963236
Alignment:
Q  470 gtttactactgtcattattaatgttggtgtatttt-ttatacctttctaatatatggttaaatgtaac 536  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  7963169 gtttactactgtcattattaatgttggtgcatttttttatacctttctaatatatggttaaatgtaac 7963236  T

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Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 42956217 - 42956302
Alignment:
Q  141 taaatttgtaaacattgatagtgactattcttcaacaatgtgcatctcacttaaattaccatctatttcaagtgttcaattatttt 226  Q
    |||||||||||||||||| | ||| | |||||||| || ||| |||||||||  ||||||| ||||||||||||||||||||||||    
T  42956217 taaatttgtaaacattgacattgattgttcttcaataacgtgtatctcacttttattaccaactatttcaagtgttcaattatttt 42956302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 12227820 - 12227889
Alignment:
Q  470 gtttactactgtcattattaatgttggtgtattttttatacctttcta---atatatggttaaatgtaac 536  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||   |||| ||||||||||||||    
T  12227820 gtttactaatgtcattattaatgttggtgcattttttatacctttctaaatatatttggttaaatgtaac 12227889  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 11232914 - 11232829
Alignment:
Q  141 taaatttgtaaacattgatagtgactattcttcaacaatgtgcatctcacttaaattaccatctatttcaagtgttcaattatttt 226  Q
    |||||||||||||||||| | ||| | || ||||| ||  || |||||||||  ||||||| ||||||||||||||||||||||||    
T  11232914 taaatttgtaaacattgacattgattgtttttcaataacatgtatctcacttttattaccaactatttcaagtgttcaattatttt 11232829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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