View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0042_low_3 (Length: 371)

Name: NF0042_low_3
Description: NF0042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0042_low_3
NF0042_low_3
[»] chr7 (13 HSPs)
chr7 (1-177)||(44727045-44727221)
chr7 (179-350)||(44726584-44726758)
chr7 (299-352)||(9680508-9680561)
chr7 (307-352)||(24815612-24815657)
chr7 (299-350)||(21679725-21679776)
chr7 (313-350)||(7092763-7092800)
chr7 (313-350)||(7349862-7349899)
chr7 (313-350)||(20299123-20299160)
chr7 (313-350)||(28487217-28487254)
chr7 (313-350)||(31156495-31156532)
chr7 (313-350)||(38395954-38395991)
chr7 (313-350)||(7470616-7470653)
chr7 (320-352)||(44011290-44011322)
[»] chr3 (13 HSPs)
chr3 (299-352)||(28100579-28100632)
chr3 (299-350)||(23636695-23636746)
chr3 (299-350)||(25635090-25635141)
chr3 (299-352)||(890289-890342)
chr3 (299-352)||(43421952-43422005)
chr3 (299-350)||(28137812-28137863)
chr3 (299-350)||(3306486-3306537)
chr3 (314-352)||(14634699-14634737)
chr3 (313-346)||(1619199-1619232)
chr3 (313-352)||(42991919-42991958)
chr3 (313-350)||(457918-457955)
chr3 (320-352)||(4386466-4386498)
chr3 (320-352)||(15824151-15824183)
[»] chr6 (6 HSPs)
chr6 (299-352)||(3396061-3396114)
chr6 (299-350)||(3630403-3630454)
chr6 (306-349)||(28038244-28038287)
chr6 (299-346)||(26944898-26944945)
chr6 (318-350)||(19696243-19696275)
chr6 (299-352)||(11138125-11138178)
[»] chr1 (12 HSPs)
chr1 (299-350)||(50077174-50077225)
chr1 (299-350)||(8347812-8347863)
chr1 (299-350)||(31423416-31423467)
chr1 (299-348)||(8954347-8954396)
chr1 (299-348)||(25249035-25249084)
chr1 (299-350)||(16430792-16430842)
chr1 (314-352)||(25127561-25127599)
chr1 (313-350)||(27337527-27337564)
chr1 (313-350)||(31736110-31736147)
chr1 (314-350)||(155396-155432)
chr1 (314-350)||(13125992-13126028)
chr1 (315-350)||(6997182-6997217)
[»] chr4 (10 HSPs)
chr4 (299-352)||(36380127-36380180)
chr4 (300-347)||(18535319-18535366)
chr4 (299-350)||(47564466-47564517)
chr4 (299-341)||(27498942-27498984)
chr4 (307-352)||(12396394-12396439)
chr4 (307-352)||(12401336-12401381)
chr4 (300-350)||(16455017-16455067)
chr4 (313-352)||(14788016-14788055)
chr4 (313-350)||(5100711-5100748)
chr4 (320-352)||(3792451-3792483)
[»] chr5 (4 HSPs)
chr5 (299-347)||(20044728-20044776)
chr5 (313-352)||(27912185-27912224)
chr5 (313-350)||(18468666-18468703)
chr5 (313-350)||(26098836-26098873)
[»] chr8 (5 HSPs)
chr8 (299-350)||(21482091-21482142)
chr8 (299-351)||(31574230-31574282)
chr8 (313-352)||(41384459-41384498)
chr8 (320-352)||(17849511-17849543)
chr8 (320-350)||(26268787-26268817)
[»] chr2 (3 HSPs)
chr2 (299-349)||(31733265-31733315)
chr2 (313-350)||(35216179-35216216)
chr2 (320-352)||(13828840-13828872)
[»] scaffold1674 (1 HSPs)
scaffold1674 (313-350)||(90-127)
[»] scaffold0005 (1 HSPs)
scaffold0005 (313-352)||(51675-51714)
[»] scaffold0011 (1 HSPs)
scaffold0011 (318-352)||(35547-35581)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 44727221 - 44727045
Alignment:
Q  1 cccctctcctccctaagttgcaccttgtccgtaggcgtgataaaagcaattgtcatgaaaaaatcaccacctttgaaggagtaaattgcataaaagcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44727221 cccctctcctccctaagttgcaccttgtccgtaggcgtgataaaagcaattgtcatgaaaaaatcaccacctttgaaggagtaaattgcataaaagcaat 44727122  T
Q  101 tatcccacaacaaagcagaaagatctacaaattccaccgccaccaaggaaggtgataacaaaatattgctaaggtag 177  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44727121 tatcccacagcaaagcaaaaagatctacaaattccaccgccaccaaggaaggtgataacaaaatattgctaaggtag 44727045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 179 - 350
Target Start/End: Complemental strand, 44726758 - 44726584
Alignment:
Q  179 aataaactgcgcattagcagaaaatatacctttgaatatatat---tttttaatttatcacttaaacaatgttatttacgatcaagaatttgaattacat 275  Q
    |||||||||| ||||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  44726758 aataaactgcacattaacagaaaatatacctttcaatatatatatatttttaatttatcacttaaacaatgttatttacaataaagaatttgaattacat 44726659  T
Q  276 tctaaaattacattattcgcacatttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44726658 tctaaaattacattattcgcacatttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 44726584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 9680561 - 9680508
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9680561 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 9680508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 24815612 - 24815657
Alignment:
Q  307 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24815612 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 24815657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 21679776 - 21679725
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  21679776 tttgaggcactttcacaataatctccaccttgactttaaattagtgatgatg 21679725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 7092763 - 7092800
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7092763 acaacattctccaccttgactctaaattagtgatgatg 7092800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 7349862 - 7349899
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7349862 acaacattctccaccttgactctaaattagtgatgatg 7349899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 20299160 - 20299123
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  20299160 acaacattctccaccttgactctaaattagtgatgatg 20299123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 28487254 - 28487217
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  28487254 acaacattctccaccttgactctaaattagtgatgatg 28487217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 31156495 - 31156532
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31156495 acaacattctccaccttgactctaaattagtgatgatg 31156532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 38395991 - 38395954
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38395991 acaacattctccaccttgactctaaattagtgatgatg 38395954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 7470616 - 7470653
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  7470616 acaacattctccaccttgactctaaatttgtgatgatg 7470653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 44011290 - 44011322
Alignment:
Q  320 tctccaccttgactctaaattagtgatgatgtc 352  Q
    ||||||||||||||||||| |||||||||||||    
T  44011290 tctccaccttgactctaaaatagtgatgatgtc 44011322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 28100579 - 28100632
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28100579 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 28100632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 23636746 - 23636695
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23636746 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatg 23636695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 25635141 - 25635090
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25635141 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatg 25635090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 890289 - 890342
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  890289 tttgagtcactttcataacaatctccaccttgactctaaattagtgatgatgtc 890342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 43421952 - 43422005
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  43421952 tttgaggcactttcacaacaatttccaccttgactccaaattagtgatgatgtc 43422005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 28137812 - 28137863
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  28137812 tttgaggcactttcacaacaatctccaccttgactttaaattaatgatgatg 28137863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 3306537 - 3306486
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||||||    
T  3306537 tttgagtcactttcacaacattctccaccttaactctaaattagtgatgatg 3306486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 352
Target Start/End: Original strand, 14634699 - 14634737
Alignment:
Q  314 caacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14634699 caacaatctccaccttgactctaaattagtgatgatgtc 14634737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 1619199 - 1619232
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgat 346  Q
    ||||||||||||||||||||||||||||||||||    
T  1619199 acaacaatctccaccttgactctaaattagtgat 1619232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 42991958 - 42991919
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  42991958 acaacattcttcaccttgactctaaattagtgatgatgtc 42991919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 457955 - 457918
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  457955 acaacattctccaccttgactctaaattagtaatgatg 457918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 4386498 - 4386466
Alignment:
Q  320 tctccaccttgactctaaattagtgatgatgtc 352  Q
    ||||||||||||||||||||| |||||||||||    
T  4386498 tctccaccttgactctaaattggtgatgatgtc 4386466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 15824151 - 15824183
Alignment:
Q  320 tctccaccttgactctaaattagtgatgatgtc 352  Q
    ||||||| |||||||||||||||||||||||||    
T  15824151 tctccacattgactctaaattagtgatgatgtc 15824183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 3396114 - 3396061
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3396114 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 3396061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 3630403 - 3630454
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3630403 tttgaggcactttcacaacaatctccaccttgactcaaaattagtgatgatg 3630454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 28038244 - 28038287
Alignment:
Q  306 cactttcacaacaatctccaccttgactctaaattagtgatgat 349  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  28038244 cactttcacaacaatctccaccttgactttaaattagtgatgat 28038287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 26944945 - 26944898
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgat 346  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||    
T  26944945 tttgagtcactttcacaacaatttccaccttgtctctaaattagtgat 26944898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 19696275 - 19696243
Alignment:
Q  318 aatctccaccttgactctaaattagtgatgatg 350  Q
    |||||||||||||||||||||||||||||||||    
T  19696275 aatctccaccttgactctaaattagtgatgatg 19696243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 11138178 - 11138125
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||| |||||  |||||| |||||||||| |||||||||| |||||||||||    
T  11138178 tttgagtcacttctacaacattctccaccttaactctaaatttgtgatgatgtc 11138125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 50077174 - 50077225
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50077174 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatg 50077225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 8347812 - 8347863
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  8347812 tttgagtcactttcacaataatctccaccttgactctaaattagtgatgatg 8347863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 31423416 - 31423467
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  31423416 tttgagtcactttcacaacaatcttcaccttgactctaaattagtgatgatg 31423467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 8954396 - 8954347
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatga 348  Q
    |||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  8954396 tttgagtcactttcacaacaatttccaccttgactcttaattagtgatga 8954347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 25249035 - 25249084
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatga 348  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  25249035 tttgaggcactatcacaacaatctcctccttgaccctaaattagtgatga 25249084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 16430842 - 16430792
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||||||||||    
T  16430842 tttgagtcactttcacaacaatctccactttgactct-aattagtgatgatg 16430792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 352
Target Start/End: Complemental strand, 25127599 - 25127561
Alignment:
Q  314 caacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  25127599 caacaatctccaccttgactctaaattagttatgatgtc 25127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 27337527 - 27337564
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  27337527 acaacattctccaccttgactctaaattagtgatgatg 27337564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 31736110 - 31736147
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31736110 acaacattctccaccttgactctaaattagtgatgatg 31736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 155432 - 155396
Alignment:
Q  314 caacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||||||||||||||||||||||| ||||||||||    
T  155432 caacaatctccaccttgactctaaataagtgatgatg 155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 13125992 - 13126028
Alignment:
Q  314 caacaatctccaccttgactctaaattagtgatgatg 350  Q
    ||||||||||||||||||| |||||||||||||||||    
T  13125992 caacaatctccaccttgacactaaattagtgatgatg 13126028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 350
Target Start/End: Complemental strand, 6997217 - 6997182
Alignment:
Q  315 aacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||| |||||||||||||||||||||||||||||||    
T  6997217 aacattctccaccttgactctaaattagtgatgatg 6997182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 36380180 - 36380127
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  36380180 tttgagtcactttcataacaatctccaccttgactctaaattagtgatgatgtc 36380127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 18535319 - 18535366
Alignment:
Q  300 ttgaggcactttcacaacaatctccaccttgactctaaattagtgatg 347  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18535319 ttgagtcactttcacaacaatctccaccttgactctaaattagtgatg 18535366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 47564517 - 47564466
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  47564517 tttgaggcactttcacaacaatctccaccttgactctaagttattgatgatg 47564466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 27498984 - 27498942
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaatta 341  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27498984 tttgaggcactttcacaacaatctccaccttgactctaaatta 27498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 12396394 - 12396439
Alignment:
Q  307 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  12396394 actttcacaacaatctccaccttgaatctaaattagtgatgatgtc 12396439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 12401336 - 12401381
Alignment:
Q  307 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  12401336 actttcacaacaatctccaccttgaatctaaattagtgatgatgtc 12401381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 16455067 - 16455017
Alignment:
Q  300 ttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    ||||| |||||  |||||||||||||||||||||| |||||||||||||||    
T  16455067 ttgagtcacttctacaacaatctccaccttgactccaaattagtgatgatg 16455017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 14788016 - 14788055
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  14788016 acaacattctccaccttgactctaaattagcgatgatgtc 14788055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 5100748 - 5100711
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  5100748 acaacattctccaccttgactctaaattagcgatgatg 5100711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 3792483 - 3792451
Alignment:
Q  320 tctccaccttgactctaaattagtgatgatgtc 352  Q
    ||||||||||||||||||||||||| |||||||    
T  3792483 tctccaccttgactctaaattagtggtgatgtc 3792451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 20044776 - 20044728
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatg 347  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20044776 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatg 20044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 27912224 - 27912185
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  27912224 acaacattctccaccttgactctaaattagtgatgatgtc 27912185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 18468703 - 18468666
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18468703 acaacattctccaccttgactctaaattagtgatgatg 18468666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 26098836 - 26098873
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  26098836 acaacattctccaccttgactctaaattagtgatgatg 26098873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 21482142 - 21482091
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  21482142 tttgagtcactttcacaataatctccaccttgactctaaattagtgatgatg 21482091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 31574230 - 31574282
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgt 351  Q
    |||||| ||||||||||||| ||| |||||||||||||||||||| |||||||    
T  31574230 tttgagtcactttcacaacattcttcaccttgactctaaattagtaatgatgt 31574282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 41384498 - 41384459
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  41384498 acaacattctccaccttgactctaaattagtgatgatgtc 41384459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 17849543 - 17849511
Alignment:
Q  320 tctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||||||||||||||||||||||||||||||    
T  17849543 tctccaccttgactctaaattagtgatgatgtc 17849511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 350
Target Start/End: Original strand, 26268787 - 26268817
Alignment:
Q  320 tctccaccttgactctaaattagtgatgatg 350  Q
    |||||||||||||||||||||||||||||||    
T  26268787 tctccaccttgactctaaattagtgatgatg 26268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 31733265 - 31733315
Alignment:
Q  299 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgat 349  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  31733265 tttgagtcactttcacaacaatctccaccttgactctaaactagtgatgat 31733315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 35216179 - 35216216
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  35216179 acaacattctccaccttgactctaaattagtgatgatg 35216216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 13828840 - 13828872
Alignment:
Q  320 tctccaccttgactctaaattagtgatgatgtc 352  Q
    ||||||||||||||||||||| |||||||||||    
T  13828840 tctccaccttgactctaaatttgtgatgatgtc 13828872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 90 - 127
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatg 350  Q
    |||||| |||||||||||||||||||||||||||||||    
T  90 acaacattctccaccttgactctaaattagtgatgatg 127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 51714 - 51675
Alignment:
Q  313 acaacaatctccaccttgactctaaattagtgatgatgtc 352  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  51714 acaacattctccaccttgactctaaattagcgatgatgtc 51675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 352
Target Start/End: Complemental strand, 35581 - 35547
Alignment:
Q  318 aatctccaccttgactctaaattagtgatgatgtc 352  Q
    ||||||||||||||||| |||||||||||||||||    
T  35581 aatctccaccttgactccaaattagtgatgatgtc 35547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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