View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0042_low_4 (Length: 326)
Name: NF0042_low_4
Description: NF0042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0042_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 65 - 326
Target Start/End: Original strand, 24438698 - 24438962
Alignment:
| Q |
65 |
aaagaactaataattgtgtaatcaagnnnnnnn--gccggtggttagtgctcagggtgtgcgagtgttgtaaatcctggcaagtttgatttctaaggata |
162 |
Q |
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| T |
24438698 |
aaagaactaataattgtgtaatcaagaaaaaaaaagccggtggttagtgctcagggtgtgcgagtgatgtaaatcctggcaagttcgatttctaaggata |
24438797 |
T |
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| Q |
163 |
aaaagcaatgctttcaaatttctccaaaacaaaggtaagaaagaaa-gtatgcttatgatctttgtaatctataattgagaacaacacacagaaccctct |
261 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24438798 |
aaaagcaatgctttcaaatttctccaaaacaaagataagaaagaaaagtatgcttatgatctttgtaatctataattgagaacaacacacagaaccctct |
24438897 |
T |
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| Q |
262 |
atatatagatcaacagttcaattagagtaaacaattattttcgcaaaaaactttattatttatcc |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24438898 |
atatatagatcaacagttcaattagagtaaacaattattttcgcaaaaaactttattatttatcc |
24438962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 24464000 - 24464053
Alignment:
| Q |
157 |
aggataaaaagcaatgctttcaaatttctccaaaacaaaggtaagaaagaaagt |
210 |
Q |
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|||||||||||| | |||||||||| ||||||| |||||| ||| ||||||||| |
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| T |
24464000 |
aggataaaaagctaagctttcaaatatctccaagacaaagataacaaagaaagt |
24464053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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