View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0042_low_5 (Length: 320)
Name: NF0042_low_5
Description: NF0042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0042_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 30 - 310
Target Start/End: Complemental strand, 24439109 - 24438827
Alignment:
| Q |
30 |
gaagtggcagtgcta-ggctataatctaatacacaaacattatttttctaattgatggtagttgaatttgacaaaagatcagtgtacttggttgagagaa |
128 |
Q |
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| T |
24439109 |
gaagtggcagtgctaaggctataatctaatacacaaacattatttttctaattgatggtagttgaatttgacaaatgatcactgtacttggttgagagaa |
24439010 |
T |
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| Q |
129 |
atccaaaagattttcctgaaatcacattcgtaagcacgattaacttgggataaataataaagttttttgcgaaaataattgtttactctaattgaactgt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24439009 |
atccaaaagattttcctgaaatcacattcgtaagcacgattaacttgggataaataataaagttttttgcgaaaataattgtttactctaattgaactgt |
24438910 |
T |
|
| Q |
229 |
tgatctatatatagagggttctgtgtgttgttctcaattatagattacaaagatcataagcatac-tttctttcttacctttg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
24438909 |
tgatctatatatagagggttctgtgtgttgttctcaattatagattacaaagatcataagcatacttttctttcttatctttg |
24438827 |
T |
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