View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0042_low_6 (Length: 268)
Name: NF0042_low_6
Description: NF0042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0042_low_6 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 226026 - 226247
Alignment:
| Q |
1 |
ttaacccaaaagccccactagaatcagatgctaattgttaaatatgttctaatgtaaaggaaacgggtggtccaatctgaccatattcttaaaaggaaca |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||||| |
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| T |
226026 |
ttaacccaaaagccccattagaatcagatgctaattgctaaatatgttctgatgtaaaggataagggtggtccaatctgagcatattcttaaaaggaaca |
226125 |
T |
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| Q |
101 |
acataaaatagttaatcatctaggagatatggattaagcatgtgacaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226126 |
acataaaatagttaatcatctaggagatatggattaagcatgtgacaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaag |
226225 |
T |
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| Q |
201 |
ctggtgcatcattggtcccatc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
226226 |
ctggtgcatcattggtcccatc |
226247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14591352 - 14591131
Alignment:
| Q |
1 |
ttaacccaaaagccccactagaatcagatgctaattgttaaatatgttctaatgtaaaggaaacgggtggtccaatctgaccatattcttaaaaggaaca |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||||| |
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| T |
14591352 |
ttaacccaaaagccccattagaatcagatgctaattgctaaatatgttctgatgtaaaggataagggtggtccaatctgagcatattcttaaaaggaaca |
14591253 |
T |
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| Q |
101 |
acataaaatagttaatcatctaggagatatggattaagcatgtgacaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaag |
200 |
Q |
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| T |
14591252 |
acataaaatagttaatcatctaggagatatggattaagcatgtgacaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaag |
14591153 |
T |
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| Q |
201 |
ctggtgcatcattggtcccatc |
222 |
Q |
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| T |
14591152 |
ctggtgcatcattggtcccatc |
14591131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 39950483 - 39950556
Alignment:
| Q |
149 |
acctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatc |
222 |
Q |
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| T |
39950483 |
acctcagttccagcaattcccattgcaagtccgatatcagcttcatgaagggctggagcatcatttgttccatc |
39950556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 5420264 - 5420191
Alignment:
| Q |
149 |
acctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatc |
222 |
Q |
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| T |
5420264 |
acctcagttccagcaatacccatggcaagtccaatgtctgcttcatgaagggctggtgcatcatttgtcccatc |
5420191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 47489237 - 47489159
Alignment:
| Q |
144 |
gacaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatc |
222 |
Q |
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|||| ||||| ||||||||||| ||||| |||| ||||||||| |||||||| | ||||| |||||||| || ||||| |
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| T |
47489237 |
gacatacctcggttccagcaatgcccattgcaagtccaatatccgcttcatgaagtgctggcgcatcatttgtaccatc |
47489159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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