View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0043_high_6 (Length: 341)

Name: NF0043_high_6
Description: NF0043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0043_high_6
NF0043_high_6
[»] chr8 (6 HSPs)
chr8 (38-170)||(15306420-15306552)
chr8 (38-170)||(15486789-15486921)
chr8 (116-170)||(27406364-27406418)
chr8 (38-78)||(27406328-27406368)
chr8 (118-170)||(37802108-37802160)
chr8 (118-170)||(44527261-44527313)
[»] chr2 (5 HSPs)
chr2 (38-170)||(24207440-24207572)
chr2 (38-170)||(6785370-6785502)
chr2 (231-341)||(26481530-26481640)
chr2 (38-109)||(37021099-37021170)
chr2 (118-161)||(4416375-4416418)
[»] chr1 (5 HSPs)
chr1 (38-170)||(33601974-33602106)
chr1 (38-109)||(9121144-9121215)
chr1 (38-109)||(47012544-47012615)
chr1 (38-109)||(1443111-1443182)
chr1 (118-170)||(51544778-51544830)
[»] chr6 (3 HSPs)
chr6 (38-170)||(13612911-13613043)
chr6 (38-109)||(32455353-32455424)
chr6 (118-156)||(25171514-25171552)
[»] chr7 (2 HSPs)
chr7 (38-170)||(56992-57124)
chr7 (38-109)||(20478632-20478703)
[»] chr5 (2 HSPs)
chr5 (38-109)||(29621242-29621313)
chr5 (38-109)||(40781141-40781212)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 15306552 - 15306420
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaatacaaatataatgttcttcatttttagt 137  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  15306552 aatcagacttcaatacgaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcgttcaatacaaatataatgtttttcatttttagt 15306453  T
Q  138 aaccaaacataaagacatgcaattattaagttt 170  Q
    ||| |||||||||||||||||||||||||||||    
T  15306452 aactaaacataaagacatgcaattattaagttt 15306420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 15486921 - 15486789
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaatacaaatataatgttcttcatttttagt 137  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  15486921 aatcagacttcaatacgaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcgttcaatacaaatataatgtttttcatttttagt 15486822  T
Q  138 aaccaaacataaagacatgcaattattaagttt 170  Q
    ||| |||||||||||||||||||||||||||||    
T  15486821 aactaaacataaagacatgcaattattaagttt 15486789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 27406364 - 27406418
Alignment:
Q  116 tataatgttcttcatttttagtaaccaaacataaagacatgcaattattaagttt 170  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  27406364 tataatgtttttcatttttagtaactaaacataaagacatgcaattattaagttt 27406418  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 27406328 - 27406368
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataa 78  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  27406328 aatcagacttcaatacgaacctcaacaaaccctttttataa 27406368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 37802160 - 37802108
Alignment:
Q  118 taatgttcttcatttttagtaaccaaacataaagacatgcaattattaagttt 170  Q
    |||||||| | |||||||||||||||||||||| |||||||||| ||| ||||    
T  37802160 taatgttcataatttttagtaaccaaacataaaaacatgcaatttttatgttt 37802108  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 44527313 - 44527261
Alignment:
Q  118 taatgttcttcatttttagtaaccaaacataaagacatgcaattattaagttt 170  Q
    |||||||| | |||||||||||||||||||||| |||||||||| ||| ||||    
T  44527313 taatgttcataatttttagtaaccaaacataaaaacatgcaatttttatgttt 44527261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 24207440 - 24207572
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaatacaaatataatgttcttcatttttagt 137  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  24207440 aatcagacttcaatacgaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcgttcaatacaaatataatgtttttcatttttagt 24207539  T
Q  138 aaccaaacataaagacatgcaattattaagttt 170  Q
    ||| |||||||||||||||||||||||||||||    
T  24207540 aactaaacataaagacatgcaattattaagttt 24207572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 6785370 - 6785502
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaatacaaatataatgttcttcatttttagt 137  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  6785370 aatcagacttcaatacgaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcgttcaatacaaatataatgtttttcatttttagt 6785469  T
Q  138 aaccaaacataaagacatgcaattattaagttt 170  Q
    ||  |||||||||||||||||||||||||||||    
T  6785470 aattaaacataaagacatgcaattattaagttt 6785502  T

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Target: chr2; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 26481530 - 26481640
Alignment:
Q  231 tcatcatcaagaagaagacgaagaaagctttcaaattctaacatctgttaaaactgattacaatcatatcatgattgttgatacccctaaatctacaatg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26481530 tcatcatcaagaagaagacgaagaaagctttcaaattctaacatctgttaaaactgattacaatcatatcatgattgttgatacccctaaatctacaatg 26481629  T
Q  331 cttctccttga 341  Q
    |||||||||||    
T  26481630 cttctccttga 26481640  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 37021170 - 37021099
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaa 109  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  37021170 aatcagacttcaatacgaacctcaacaaaccctttttataatttgtttaaatcaggacgtgatttcgttcaa 37021099  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 4416375 - 4416418
Alignment:
Q  118 taatgttcttcatttttagtaaccaaacataaagacatgcaatt 161  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||    
T  4416375 taatgttcatcatttttagtaaccaaacataaaaacatgaaatt 4416418  T

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Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 33601974 - 33602106
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaatacaaatataatgttcttcatttttagt 137  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33601974 aatcagacttcaataccaacctcaaaaaaccctttttataaattgtttaaatcaggacgtgatttcgttcaatacaaatataatgttcttcatttttagt 33602073  T
Q  138 aaccaaacataaagacatgcaattattaagttt 170  Q
    ||||||||||||||||||  |||||||||||||    
T  33602074 aaccaaacataaagacattaaattattaagttt 33602106  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 9121144 - 9121215
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaa 109  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  9121144 aatcagacttcaatacgaacctcaacaaaccctttttataatttgtttaaatcaggacgtgatttcgttcaa 9121215  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 47012544 - 47012615
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaa 109  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  47012544 aatcagacttcaatacgaacctcaacaaaccctttttataatttgtttaaatcaggacgtgatttcgttcaa 47012615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 1443182 - 1443111
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaa 109  Q
    |||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  1443182 aatcagactttaatacgaacctcaacaaaccctttttataatttgtttaaatcaggacgtgatttcgttcaa 1443111  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 51544830 - 51544778
Alignment:
Q  118 taatgttcttcatttttagtaaccaaacataaagacatgcaattattaagttt 170  Q
    |||||||| | |||||||||||||||||||||| |||||||||| ||| ||||    
T  51544830 taatgttcataatttttagtaaccaaacataaaaacatgcaatttttatgttt 51544778  T

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Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 13612911 - 13613043
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaatacaaatataatgttcttcatttttagt 137  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  13612911 aatcagacttcaatatcaacctcaaaaaaccctttttataaattgtttaaatcaggacgtgatttcgttcagtacaaatataaagttcttcatttttagt 13613010  T
Q  138 aaccaaacataaagacatgcaattattaagttt 170  Q
    ||||||||||||||||||| |||||||||||||    
T  13613011 aaccaaacataaagacatgaaattattaagttt 13613043  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 32455353 - 32455424
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaa 109  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  32455353 aatcagacttcaatacgaacctcaacaaaccctttttataatttgtttaaatcaggacgtgatttcgttcaa 32455424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 25171514 - 25171552
Alignment:
Q  118 taatgttcttcatttttagtaaccaaacataaagacatg 156  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  25171514 taatgttcatcatttttagtaaccaaacataaaaacatg 25171552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 57124 - 56992
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaatacaaatataatgttcttcatttttagt 137  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||    
T  57124 aatcaaacttcaacaccaacctcaaaaaaccctttttataaattgtttaaatcaggatgtgatttcgttcagtacaaatataatgttcttcatttttagt 57025  T
Q  138 aaccaaacataaagacatgcaattattaagttt 170  Q
    ||||||||||||||||||| |||||||||||||    
T  57024 aaccaaacataaagacatgaaattattaagttt 56992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 20478703 - 20478632
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaa 109  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  20478703 aatcagacttcaatacgaacctcaacaaaccctttttataatttgtttaaatcaggacgtgatttcgttcaa 20478632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 29621242 - 29621313
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaa 109  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  29621242 aatcagacttcaatacgaacctcaacaaaccctttttataatttgtttaaatcaggacgtgatttcgttcaa 29621313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 40781212 - 40781141
Alignment:
Q  38 aatcagacttcaataccaacctcaacaaaccctttttataaattgtttaaatcaggacgtgatttcattcaa 109  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  40781212 aatcagacttcaatacgaacctcaacaaaccctttttataatttgtttaaatcaggacgtgatttcgttcaa 40781141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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