View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0043_low_3 (Length: 472)
Name: NF0043_low_3
Description: NF0043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0043_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 91 - 465
Target Start/End: Complemental strand, 11437833 - 11437459
Alignment:
| Q |
91 |
cccctctcactactcttgttgatgcagatcaactcttttccaatggttacttaatgccattatttgttgaatcattgaatatagaaccatatgaatatga |
190 |
Q |
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| T |
11437833 |
cccctctcaccactcttgttgatgcagatcaactcttttccaatggttacttaatgccattatttgttgaatcattgaatatagaaccatatgaatatga |
11437734 |
T |
|
| Q |
191 |
ttcatcaaattctaattcaaattcagattcaaattcaaccttagcttcttccatatcacatgtaacaaataaagtcgttcctctagaaaattcgcgaagc |
290 |
Q |
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| T |
11437733 |
ttcatcaaattctaattcaaattcagattcaaattcaaccttagcttcttccatatcacatgtaacaaataaagtggttcctctagaaaattcaagaacc |
11437634 |
T |
|
| Q |
291 |
ccttcattgaaaaggcgtagaacattatcaaggagcgtgtttcaaaagtatttgaaatttttaaggcctttatgtagaagattgaggggtcaaaaatcag |
390 |
Q |
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| T |
11437633 |
ccttcattgaaaaggtgtagaacattatcaaggagcatgtttcaaaagtatttgaaatttttaaggcctttgtgtagaagattgaggggtcaaaagtcag |
11437534 |
T |
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| Q |
391 |
gatcaaaacatgaaaatgttgtgaaaagaactcaatcagtgaagaatattagaggaaattatggtgattcatctc |
465 |
Q |
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| T |
11437533 |
gatcaaaacatgaaaatgttgtgaaaagaactcaatcagtgaagaatattagaggaaattatggtgattcatctc |
11437459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 91 - 465
Target Start/End: Complemental strand, 11430486 - 11430118
Alignment:
| Q |
91 |
cccctctcactactcttgttgatgcagatcaactcttttccaatggttacttaatgccattatttgttgaatcattgaatatagaaccatatgaatatga |
190 |
Q |
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| T |
11430486 |
cccccctcacaactcttgttgatgcagatcaactcttttcaaatggttacttaatacccctttttgttgaatcattgaatattgaaccatatgaatatga |
11430387 |
T |
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| Q |
191 |
ttcatcaaattctaattcaaattcagattcaaattcaaccttagcttcttccatatcacatgtaacaaataaagtcgttcctctagaaaattcgcgaagc |
290 |
Q |
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| T |
11430386 |
ttcatt------taattcaaattcaaattcaaattcaactttaccttgttcatcctcacatgttccaaaaaaattggttcctatagaaaaccctagaact |
11430293 |
T |
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| Q |
291 |
ccttcattgaaaaggcgtagaacattatcaaggagcgtgtttcaaaagtatttgaaatttttaaggcctttatgtagaagattgaggggtcaaaaatcag |
390 |
Q |
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||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
11430292 |
ccttcattgaaaaggtgtagaacattatcgaggaaaatgtttcaaaagtatttgaattttttaagccctttgtgtagaagattgaggggtcaaaattcag |
11430193 |
T |
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| Q |
391 |
gatcaaaacatgaaaatgttgtgaaaagaactcaatcagtgaagaatattagaggaaattatggtgattcatctc |
465 |
Q |
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| T |
11430192 |
gaacaaagcatgaaaatgttgtgaaaagaactcaatcagttaagaatataagaagaaattattgtgaatcatctc |
11430118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 104 - 465
Target Start/End: Complemental strand, 11423304 - 11422958
Alignment:
| Q |
104 |
tcttgttgatgcagatcaactcttttccaatggttacttaatgccattatttgttgaatcattgaatatagaaccatatgaatatgattcatcaaattct |
203 |
Q |
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| T |
11423304 |
tcttgttgatgcagaccaactcttttccaatggttactttatgccatattttgtttaatcattgaaaactgaaccatatgaatatgattcatca------ |
11423211 |
T |
|
| Q |
204 |
aattcaaattcagattcaaattcaaccttagcttcttc--cat-atcacatgtaacaaataaagtcgttcctctagaaaattcgcgaagcccttcattga |
300 |
Q |
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| T |
11423210 |
------------gattcaaattcaacatcagcttcttcatcatcatcacatataccacaaaaagtagttcctttagaaaattcaggaataacaataatga |
11423123 |
T |
|
| Q |
301 |
aaaggcgtagaacattatcaaggagcgtgtttcaaaagtatttgaaatttttaaggcctttatgtagaagattgaggggtcaaaaatcaggatcaaaaca |
400 |
Q |
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||| | ||||||||||||||||||| |||||||||||||||| || || || |||| ||| | || | |||||||||||| ||||||||| ||| ||| |
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| T |
11423122 |
aaatgtgtagaacattatcaaggagaatgtttcaaaagtattttaatttctttaggcatttgggaagtaaattgaggggtcacaaatcaggaccaagaca |
11423023 |
T |
|
| Q |
401 |
tgaaaatgttgtgaaaagaactcaatcagtgaagaatattagaggaaattatggtgattcatctc |
465 |
Q |
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| T |
11423022 |
tgaaaatgttgggaaaagaactcaatcagtgaagaataagaaaggaaattaccgtgaatcatctc |
11422958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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