View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0043_low_9 (Length: 366)
Name: NF0043_low_9
Description: NF0043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0043_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 144 - 366
Target Start/End: Original strand, 3569147 - 3569369
Alignment:
| Q |
144 |
gaaatgacttcagaacttcctaaaatcacatgacatggggtgataactatgctgagataggaaatttttgttcactttatccatttcttgagtaccatat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3569147 |
gaaatgacttcagaacttcctaaaatcacatgacatggggtgataactatgctgagataggaaatttttgttcactttatccatttcttgagtaccatat |
3569246 |
T |
|
| Q |
244 |
tttattctaaaaatgtccttgagcatttcatatgttataatccgaaaagagtttttcccctcttttcgaggnnnnnnnntgagttttccaccaattcggc |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||| |
|
|
| T |
3569247 |
tttattctaaaaatgtccttgagcatttcatatgttataatccgaaaagagtttttcccctattttcggggaaaaaaaatgagttttccaccaattcgga |
3569346 |
T |
|
| Q |
344 |
ttataaaatccaaacaaataagt |
366 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3569347 |
ttataaaatccaaacaaataagt |
3569369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 22027323 - 22027360
Alignment:
| Q |
144 |
gaaatgacttcagaacttcctaaaatcacatgacatgg |
181 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
22027323 |
gaaatgacttcagaatttcctaaaatcacatgatatgg |
22027360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 42104194 - 42104231
Alignment:
| Q |
144 |
gaaatgacttcagaacttcctaaaatcacatgacatgg |
181 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
42104194 |
gaaatgacttcagaatttcctaaaatcacatgatatgg |
42104231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 796 times since January 2019
Visitors: 1108