View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0044_high_2 (Length: 398)
Name: NF0044_high_2
Description: NF0044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0044_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 68 - 386
Target Start/End: Original strand, 24052966 - 24053283
Alignment:
| Q |
68 |
gattgtgagttttaaatttaattaagtagcaattnnnnnnnggtgaattttgttctatgggtataaaagatttctgattcttgaaatcgaatgttgggtg |
167 |
Q |
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| T |
24052966 |
gattgagagttttaaatttaattaagtagcaatgaaaaaaatgtgaattttgttctatgg-tataaaagatttctgattcttgaaatcgaatgttgggtg |
24053064 |
T |
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| Q |
168 |
caggacttgcatttctaatgggtggaaggaagggtattggattttccgatcaatgacaatatgggtattcatttgtatgaaaggatggcttcaatctttt |
267 |
Q |
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| T |
24053065 |
caggacttgcatttctaatgggtggaaggaagggtattggattttccgatcaatgacaatatgggtattcatttgtatgaaaggatggcttcaatctttt |
24053164 |
T |
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| Q |
268 |
caattttgggggtttatgtatgaaaaattatatttatgtacaaaattgtggaacttgatataaagtataataatgtcatccattaattgaatgataatca |
367 |
Q |
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| T |
24053165 |
caattttgggggtttatgtatgaaaaattatatttatgtacaaaattgtggaacttgatataaagtataataatgtcatccattaattgaatgataatca |
24053264 |
T |
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| Q |
368 |
atattagtatctaccttca |
386 |
Q |
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| T |
24053265 |
atattagtatctaccttca |
24053283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 386
Target Start/End: Original strand, 36492767 - 36492916
Alignment:
| Q |
236 |
tcatttgtatgaaaggatggcttcaatc-ttttcaattttgggggtttatgtatgaaaaattatatttatgtacaaaattgtggaacttgatataaagta |
334 |
Q |
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| T |
36492767 |
tcatttgtataaaagtatagcttcacccgttttaaattttgggggttgttgtatgaaaaattatatttatgtacaaaaatgtgcaac-tcatatatagta |
36492865 |
T |
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| Q |
335 |
taataatgtcatccattaattgaatgataatcaatattagtatctaccttca |
386 |
Q |
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| T |
36492866 |
taataataccgt-caataattgaatgataatcaatactaatatctatcttca |
36492916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 36485106 - 36485165
Alignment:
| Q |
326 |
tataaagtataataatgtcatccattaattgaatgataatcaatattagtatctaccttca |
386 |
Q |
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| T |
36485106 |
tataaagtataataatgccatcaat-agttgaatgataatcaatactaatatctaccttca |
36485165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 380
Target Start/End: Original strand, 36485269 - 36485308
Alignment:
| Q |
341 |
tgtcatccattaattgaatgataatcaatattagtatcta |
380 |
Q |
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| T |
36485269 |
tgtcatccaataattgaatgataatcaatagtagtatcta |
36485308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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