View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0044_high_4 (Length: 302)
Name: NF0044_high_4
Description: NF0044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0044_high_4 |
 |  |
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[»] scaffold0648 (2 HSPs) |
 |  |  |
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[»] scaffold0274 (2 HSPs) |
 |  |  |
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[»] scaffold0640 (2 HSPs) |
 |  |  |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 30)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 19333981 - 19334260
Alignment:
Q |
11 |
ttgatatctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaagg |
110 |
Q |
|
|
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| |
|
|
T |
19333981 |
ttgatctctcttataaccaactacaaggatcagttccagaagaaataggccaactttcccatattcaacaacttgatctctctgaaaaccaactacaagg |
19334080 |
T |
 |
Q |
111 |
atctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaa |
210 |
Q |
|
|
|||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
T |
19334081 |
atctattccttcaactctaggaaacctctcttccttaaattacttatttattggctctaataatttctctggtgaaatttcaaaattaactttttccaaa |
19334180 |
T |
 |
Q |
211 |
ctctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||| || ||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
T |
19334181 |
ctctatactttaggtttgctagacatgagttattcaaatattgtattccaatttgatttggattggattcctccttttca |
19334260 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 18115949 - 18116216
Alignment:
Q |
23 |
ataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctattccttc |
122 |
Q |
|
|
||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
T |
18115949 |
ataaccaactacaagaatcaattccagaagaaataggccaacttgcccatattcaacaacttgatctctctgaaaaccaactacaaggatctattccttc |
18116048 |
T |
 |
Q |
123 |
aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta |
222 |
Q |
|
|
|||| ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
18116049 |
aactctaggaaatctctcttccctaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta |
18116148 |
T |
 |
Q |
223 |
gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
||| ||||||||| || ||||| |||||||| |||| |||||||||||||||||||||| ||||| |
|
|
T |
18116149 |
gatcatctagacttgcgtaattcagattttgtaatccagattgatttggattgggttcctccctttca |
18116216 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 19461510 - 19461712
Alignment:
Q |
17 |
tctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctat |
116 |
Q |
|
|
||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
T |
19461510 |
tctcttataaccaactacaagaatcagttccaaaagaaataggccaacttgcccatattcaacaacttgatctctctgaaaaccaactacaaggatctat |
19461609 |
T |
 |
Q |
117 |
tccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctct |
216 |
Q |
|
|
|||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
19461610 |
tccttcaactctaggaaacctctcttccctaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctct |
19461709 |
T |
 |
Q |
217 |
agt |
219 |
Q |
|
|
||| |
|
|
T |
19461710 |
agt |
19461712 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 55 - 290
Target Start/End: Complemental strand, 17727521 - 17727286
Alignment:
Q |
55 |
ataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctattccttcaactataggaaacctctcttccttatattact |
154 |
Q |
|
|
|||||||||||||| ||||||||| |||| ||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||| || ||| || || |
|
|
T |
17727521 |
ataggccaacttgcacatattcaagacctcgatctctctaaaaaccaactacaaggatcaattccttcaactctaggaaacctctcatctttaattttct |
17727422 |
T |
 |
Q |
155 |
tatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgt |
254 |
Q |
|
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | |||||| |||||||||||| |
|
|
T |
17727421 |
tatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagattcactacaattgagtaattcaaattttgc |
17727322 |
T |
 |
Q |
255 |
attccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| |
|
|
T |
17727321 |
attccaatttgatttggattgggttcctccttttca |
17727286 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 55 - 290
Target Start/End: Complemental strand, 19028750 - 19028515
Alignment:
Q |
55 |
ataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctattccttcaactataggaaacctctcttccttatattact |
154 |
Q |
|
|
|||||||||||||| ||||||||| |||| ||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||| || ||| || || |
|
|
T |
19028750 |
ataggccaacttgcacatattcaagacctcgatctctctaaaaaccaactacaaggatcaattccttcaactctaggaaacctctcatctttaattttct |
19028651 |
T |
 |
Q |
155 |
tatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgt |
254 |
Q |
|
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | |||||| |||||||||||| |
|
|
T |
19028650 |
tatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagattcactacaattgagtaattcaaattttgc |
19028551 |
T |
 |
Q |
255 |
attccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| |
|
|
T |
19028550 |
attccaatttgatttggattgggttcctccttttca |
19028515 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 19399784 - 19399959
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
T |
19399784 |
attccttcaactctaggaaacctctcttccttaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct |
19399883 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||||||||||| |||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
T |
19399884 |
ctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
19399959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 19414168 - 19414435
Alignment:
Q |
23 |
ataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctattccttc |
122 |
Q |
|
|
||||| |||||||||| ||||||||||| | ||||||| || | || |||||||||||||| ||| |||||||||||||||||||||||| |||| ||| |
|
|
T |
19414168 |
ataaccaactacaagggtcagttccagatggaataggcaaattagcacatattcaacacctcgatctctctgaaaaccaactacaaggattcattctttc |
19414267 |
T |
 |
Q |
123 |
aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta |
222 |
Q |
|
|
|||| ||||||| ||| | |||||| |||||||||||||||| || ||||||||||||||| | |||| ||||||| ||||||||||||||||||||||| |
|
|
T |
19414268 |
aactctaggaaatctcccatccttaaattacttatctattggttcgaataatttctctggtaatattttaaatttatatttttccaaactctctagttta |
19414367 |
T |
 |
Q |
223 |
gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|| |||||||||||| |||||| |||||| |||||||||||||||||||||||||| |||||||| |
|
|
T |
19414368 |
aatcatctagacttgagtaattcaagttttgttttccaatttgatttggattgggttcccccttttca |
19414435 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 78 - 290
Target Start/End: Original strand, 18103385 - 18103597
Alignment:
Q |
78 |
acaccttgatatctctgaaaaccaactacaaggatctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttc |
177 |
Q |
|
|
|||||||||| ||||| | ||||||||||||||||| ||||| |||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||| |
|
|
T |
18103385 |
acaccttgatctctcttataaccaactacaaggatcaattccctcaactctaggaaacctctcatccttaaattacttatttattggctctaataatttc |
18103484 |
T |
 |
Q |
178 |
tctggtgaaatttcaaatttacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattggg |
277 |
Q |
|
|
|||||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||| |
|
|
T |
18103485 |
tctggtaaaatttcaaatttgcatttttccaaactctgtagtttagatgaactagacttgagtaactcaaattttgtattccaatttgatatggattggg |
18103584 |
T |
 |
Q |
278 |
ttcctccttttca |
290 |
Q |
|
|
| ||||||||||| |
|
|
T |
18103585 |
tacctccttttca |
18103597 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 17941932 - 17942212
Alignment:
Q |
17 |
tctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctat |
116 |
Q |
|
|
||||| ||||| ||||||||||| | ||||| | | |||||||||||| | |||||||| |||| ||| ||||||||||| ||||||||||||| || |
|
|
T |
17941932 |
tctcttataaccaactacaaggactaattccaaatggaataggccaactaccaaatattcaatacctcgatctctctgaaaacgaactacaaggatcaat |
17942031 |
T |
 |
Q |
117 |
tccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctct |
216 |
Q |
|
|
||| | ||| ||||||||||||| || ||| ||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
T |
17942032 |
tcccacgactctaggaaacctctcatcattaaattggttatttattggttctaataatttctctggtgaaatttcaaatttaacttttttcaaactctct |
17942131 |
T |
 |
Q |
217 |
agtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttcatctcact |
297 |
Q |
|
|
|||||||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
T |
17942132 |
agtttagactcactagacttgagtaattcaagttttgtattccaatttgatttggattgggttcctccttttcaactcact |
17942212 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 17949908 - 17950083
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |
|
|
T |
17949908 |
attccttcaactctaggaaacctctcatccttatattacttatctattggctctaataatttctctggtaaaatttcaaatttacatttttccaaattat |
17950007 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
T |
17950008 |
ttagtttagatgaactagacttgagtaattcaaattttgtaatccaatttgatttggattgggttcctccttttca |
17950083 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 19464346 - 19464607
Alignment:
Q |
29 |
aactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctattccttcaactat |
128 |
Q |
|
|
|||||||||||||| || |||| |||||||||||| || ||||||||| | |||||| |||| |||||||| ||||||||||| ||||| || || | |
|
|
T |
19464346 |
aactacaaggatcaatttcagatagaataggccaactagcacatattcaagagcttgatctctcggaaaaccagctacaaggatcaattccgtcgacact |
19464445 |
T |
 |
Q |
129 |
aggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagtttagattgg |
228 |
Q |
|
|
|||||||||||| || ||| || |||||||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
T |
19464446 |
aggaaacctctcatctttaaatgacttatctatcggctctaacaatttctcaggtgaaatttcaaatttaactttttccaaactctctagtttacattat |
19464545 |
T |
 |
Q |
229 |
ctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
||||||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||| |
|
|
T |
19464546 |
ttagacttgagtaattcaaattttgtctcccaaattgatttggattgggttcctccttttca |
19464607 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 118 - 290
Target Start/End: Original strand, 18165235 - 18165407
Alignment:
Q |
118 |
ccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctcta |
217 |
Q |
|
|
||||| ||| ||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
T |
18165235 |
ccttcgactctaggaaacctctcatccttaaatgacttatctattggctctaataatttctctggtgaaatttcaaatttacattttgccaaactctcca |
18165334 |
T |
 |
Q |
218 |
gtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
T |
18165335 |
atttagattcactagacttgagtaattcaaattttgtattccaatttgctttggattgggttcctccttttca |
18165407 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 19375698 - 19375873
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
||||||| |||| ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |
|
|
T |
19375698 |
attcctttaactctaggaaacctctcatccttaaatttgttatctattggctctaataatttctctggtgaaatttctaaattaactttttccaaactct |
19375797 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
19375798 |
ctagtttagattcactagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttca |
19375873 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 123 - 290
Target Start/End: Original strand, 19380977 - 19381144
Alignment:
Q |
123 |
aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta |
222 |
Q |
|
|
|||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| |
|
|
T |
19380977 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaattaactttttccaaactctctagttta |
19381076 |
T |
 |
Q |
223 |
gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
T |
19381077 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttca |
19381144 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 18108515 - 18108690
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
|||||||||||| |||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
T |
18108515 |
attccttcaactgtaggaaacctctcttccttaaagcacttatttattggctctaataatttctctggcgaaatttcaaatttacatttttccaatctct |
18108614 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
||| |||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
T |
18108615 |
ctactttattttcactagacttgagtaattcaaattttgtattccagtttgatttggattgggttcctccttttca |
18108690 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 97 - 290
Target Start/End: Original strand, 18016080 - 18016273
Alignment:
Q |
97 |
aaccaactacaaggatctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatt |
196 |
Q |
|
|
|||||||||||||||||||||||||||||| |||||||||| || |||||| || |||||| ||||||||||||||||||||||||||||||||| | | |
|
|
T |
18016080 |
aaccaactacaaggatctattccttcaactctaggaaacctgtcatccttaatttccttatcgattggctctaataatttctctggtgaaatttcacaat |
18016179 |
T |
 |
Q |
197 |
tacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
| |||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
T |
18016180 |
tttttttttccaaactctctagtttaaatcatttagacttgagtaattcaaattttgaattccaatttgatttggattgggttcctccttttca |
18016273 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 78 - 290
Target Start/End: Original strand, 19436997 - 19437209
Alignment:
Q |
78 |
acaccttgatatctctgaaaaccaactacaaggatctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttc |
177 |
Q |
|
|
|||||||||| ||||| | ||||||||||||||||| ||||| |||||||||||||| |||||| |||| |||||||||| |||||||||||| |
|
|
T |
19436997 |
acaccttgatctctcttataaccaactacaaggatcaattccagatggaataggaaacctctcatccttaagttacctatctattggttctaataatttc |
19437096 |
T |
 |
Q |
178 |
tctggtgaaatttcaaatttacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattggg |
277 |
Q |
|
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
T |
19437097 |
tctggtgaaatttcaaaattaactttttccaaactctctagtttagattggctcgacttgagcaattcaaattttgtattcaaatttgatatggattggg |
19437196 |
T |
 |
Q |
278 |
ttcctccttttca |
290 |
Q |
|
|
||||||||||||| |
|
|
T |
19437197 |
ttcctccttttca |
19437209 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 19351470 - 19351644
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttca-aatttacatttttccaaactc |
213 |
Q |
|
|
|||||||||||| ||||||||||||| |||||| || |||||| |||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| |
|
|
T |
19351470 |
attccttcaactctaggaaacctctcatccttaatttccttatcgattggctctaatcatttcactggtgaaatttcacaatttt--tttttccaaactc |
19351567 |
T |
 |
Q |
214 |
tctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
19351568 |
tctagtttagaatggctagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttca |
19351644 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 115 - 295
Target Start/End: Original strand, 18146906 - 18147086
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
|||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||| |
|
|
T |
18146906 |
attccttcaactctaggaaacctctcatccttaaattacttatggattggctctaataatttctctggtgcaatttcaaaattaactttttccaacctct |
18147005 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttcatctca |
295 |
Q |
|
|
|||||||||||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
T |
18147006 |
ctagtttagattcactagacatgagtaattcaagttttgtattccaatttgatttggattgggttccaccttttcaactca |
18147086 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 114 - 290
Target Start/End: Original strand, 19393224 - 19393400
Alignment:
Q |
114 |
tattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactc |
213 |
Q |
|
|
||||||||||||| ||||||||||||| |||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
19393224 |
tattccttcaactttaggaaacctctcatccttaaattacttatctattagcgataacaatttctctggtgaaatttcaaatttacatttttccaaactc |
19393323 |
T |
 |
Q |
214 |
tctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||||||| || ||| |||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||| |
|
|
T |
19393324 |
catagtttagtttcactaaacttgagtaattcaatttttgaattccaatttgatttgaattgggttcctccttttca |
19393400 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 115 - 290
Target Start/End: Complemental strand, 14896314 - 14896139
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
|||||||||||| ||||||||||||| |||||| || |||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| || |
|
|
T |
14896314 |
attccttcaactctaggaaacctctcatccttaatttccttatccattggctctaataatttctctgctgaaatttcaaatttaactttttccaaacact |
14896215 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
||||||||| || |||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
T |
14896214 |
ctagtttagtttcactagacatgagtaattcaaatgttgcattccaatttgatttggattgggttcctccttttca |
14896139 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 106 - 289
Target Start/End: Original strand, 18144258 - 18144440
Alignment:
Q |
106 |
caaggatctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacattttt |
205 |
Q |
|
|
||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
T |
18144258 |
caaggatctattccttcaactccaggaa-cctctcttccttaatttacttatctattggctctaacaatttctctggtgaaatttcaaatttacattttt |
18144356 |
T |
 |
Q |
206 |
ccaaactctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttc |
289 |
Q |
|
|
|||||||||||||||||| | ||| | |||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
T |
18144357 |
ccaaactctctagtttagttgtactatagatgaggaattcacgttttgtattccaatttgatttggattaggttcctccttttc |
18144440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 19424763 - 19424938
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
|||||||||||| ||||||||||||| || ||| || |||||| |||||||||||||| ||||| |||||||||||||| ||| |||||||||||||| |
|
|
T |
19424763 |
attccttcaactttaggaaacctctcatcattaaatcacttatggattggctctaataaattctcaggtgaaatttcaaaattaactttttccaaactct |
19424862 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
19424863 |
ctagtttagaagaactagacttgagtaattcaacttttgtattccaatttgatttggattgggttcctccttttca |
19424938 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 118 - 290
Target Start/End: Original strand, 25463129 - 25463301
Alignment:
Q |
118 |
ccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctcta |
217 |
Q |
|
|
|||| |||||||||||||||||| |||||| || ||||||||| ||||||||||| |||||||| | ||||||||| ||| ||| |||||||||| || |
|
|
T |
25463129 |
cctttaactataggaaacctctcatccttaacttccttatctatcggctctaataacttctctggggcaatttcaaaattaactttctccaaactcttta |
25463228 |
T |
 |
Q |
218 |
gtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
T |
25463229 |
gtttagattcactagacttgagtaattcaacttttgtattacaatttgatttggattgggttcctccttttca |
25463301 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 16677295 - 16677470
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
|||||||||||| ||||||||||||| || ||| ||| ||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||| |
|
|
T |
16677295 |
attccttcaactctaggaaacctctcatctttaaattccttatctattggcaataatgatttctctggtgaagtttcaaatttaactttttccaaactct |
16677394 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
||||||||||| |||||| |||| | || | |||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
16677395 |
ctagtttagatatactagacctgagaagattaagtgttgtattccaatttgatttggattgggttcctccatttca |
16677470 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 17727703 - 17727601
Alignment:
Q |
17 |
tctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctat |
116 |
Q |
|
|
||||||| ||| |||||||||| ||||||||| | || |||||| ||| | |||||||||||||| ||| |||||||||||||||||| |||||| || |
|
|
T |
17727703 |
tctctgaaaaccaactacaagggtcagttccatatgatataggcagactagtacatattcaacacctcgatctctctgaaaaccaactacgaggatcaat |
17727604 |
T |
 |
Q |
117 |
tcc |
119 |
Q |
|
|
||| |
|
|
T |
17727603 |
tcc |
17727601 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 19028932 - 19028830
Alignment:
Q |
17 |
tctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctat |
116 |
Q |
|
|
||||||| ||| |||||||||| ||||||||| | || |||||| ||| | |||||||||||||| ||| |||||||||||||||||| |||||| || |
|
|
T |
19028932 |
tctctgaaaaccaactacaagggtcagttccatatgatataggcagactagtacatattcaacacctcgatctctctgaaaaccaactacgaggatcaat |
19028833 |
T |
 |
Q |
117 |
tcc |
119 |
Q |
|
|
||| |
|
|
T |
19028832 |
tcc |
19028830 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 18144222 - 18144258
Alignment:
Q |
32 |
tacaaggatcagttccagaagaaataggccaacttgc |
68 |
Q |
|
|
||||||||||||||||||||||||||||||||||||| |
|
|
T |
18144222 |
tacaaggatcagttccagaagaaataggccaacttgc |
18144258 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 18146814 - 18146878
Alignment:
Q |
23 |
ataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgat |
87 |
Q |
|
|
||||||||||||| |||||| ||||| | | ||||||||||||||| ||||||||| |||||||| |
|
|
T |
18146814 |
ataacaaactacacggatcaattccaaatggaataggccaacttgcacatattcaataccttgat |
18146878 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 24493375 - 24493427
Alignment:
Q |
142 |
tccttatattacttatctattggctctaataatttctctggtgaaatttcaaa |
194 |
Q |
|
|
||||||| |||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
T |
24493375 |
tccttatcttacttatctattgcctctaataatttctcaggtgaaatatcaaa |
24493427 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 83 - 288
Target Start/End: Complemental strand, 13666906 - 13666701
Alignment:
Q |
83 |
ttgatatctctgaaaaccaactacaaggatctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctgg |
182 |
Q |
|
|
||||| ||| ||||||| | ||||||||||| |||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| |
|
|
T |
13666906 |
ttgatctctttgaaaacaacctacaaggatcaattccttcaactctaggaaacctctcatccttaaattacttatctattagctctaataatttctctgg |
13666807 |
T |
 |
Q |
183 |
tgaaatttcaaatttacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcct |
282 |
Q |
|
|
|||||||||||||||| |||||| ||||||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
T |
13666806 |
tgaaatttcaaatttaactttttctaaactctctagtttagacacactatgcttgagtaattcaaagcttgtattccaatttgatttggattgggttcct |
13666707 |
T |
 |
Q |
283 |
cctttt |
288 |
Q |
|
|
|||||| |
|
|
T |
13666706 |
cctttt |
13666701 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 123 - 289
Target Start/End: Complemental strand, 4019 - 3853
Alignment:
Q |
123 |
aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta |
222 |
Q |
|
|
|||| ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
T |
4019 |
aactctaggaaacctctcatccttacattccttatctattggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagttta |
3920 |
T |
 |
Q |
223 |
gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttc |
289 |
Q |
|
|
||| ||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
T |
3919 |
gatgaactatacttgagtaattcaaatattgtattccgatttgatttggattgggttcctccttttc |
3853 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4141 - 4055
Alignment:
Q |
1 |
ttgagatattttgatatctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgat |
87 |
Q |
|
|
|||||| || ||||| ||||||| ||| ||||||||||||||||| || | | |||||| ||||| || ||||||||||||||||| |
|
|
T |
4141 |
ttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaataggtcaactagcaaatattcaacaccttgat |
4055 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 123 - 289
Target Start/End: Complemental strand, 3489 - 3323
Alignment:
Q |
123 |
aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta |
222 |
Q |
|
|
|||| ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
T |
3489 |
aactctaggaaacctctcatccttacattccttatctattggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagttta |
3390 |
T |
 |
Q |
223 |
gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttc |
289 |
Q |
|
|
||| ||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
T |
3389 |
gatgaactatacttgagtaattcaaatattgtattccgatttgatttggattgggttcctccttttc |
3323 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3611 - 3525
Alignment:
Q |
1 |
ttgagatattttgatatctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgat |
87 |
Q |
|
|
|||||| || ||||| ||||||| ||| ||||||||||||||||| || | | |||||| ||||| || ||||||||||||||||| |
|
|
T |
3611 |
ttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaataggtcaactagcaaatattcaacaccttgat |
3525 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 15535609 - 15535784
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
|||||||||||| ||||||||||||| |||||| ||| |||||||||||| ||||||||||| ||||||| || |||||| ||| |||||||||||||| |
|
|
T |
15535609 |
attccttcaactctaggaaacctctcatccttaaattccttatctattggatctaataatttatctggtgcaaattcaaaattaactttttccaaactct |
15535708 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|| ||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
T |
15535709 |
ctggtttagattcactagacttgagtaattcaaattttgtattccaattttatttggattgggttcctccttttca |
15535784 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 115 - 290
Target Start/End: Complemental strand, 2710500 - 2710325
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
|||||||||||| ||||||||||||| |||||| | | |||| ||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
T |
2710500 |
attccttcaactctaggaaacctctcatccttaaagtccttacttattggcactaatcatttttctggtgaaatttcaaatttaactttttccaaactct |
2710401 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||||||||||| |||||| ||||| ||||| || ||||||||||||||||||| ||||||||||||||||||| |
|
|
T |
2710400 |
ctagtttagattcactagacgtgagtagttcaacttgtgtattccaatttgatttgaattgggttcctccttttca |
2710325 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 2710592 - 2710528
Alignment:
Q |
23 |
ataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgat |
87 |
Q |
|
|
||||| ||||||||||| || ||| ||| |||||||||||||| || |||||||| |||||||| |
|
|
T |
2710592 |
ataaccaactacaaggaccaattcaagatgaaataggccaactagcatatattcaataccttgat |
2710528 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 123 - 289
Target Start/End: Original strand, 5487 - 5653
Alignment:
Q |
123 |
aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta |
222 |
Q |
|
|
|||| ||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
T |
5487 |
aactctaggaaacctctcatccttacattccttatctactggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagttta |
5586 |
T |
 |
Q |
223 |
gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttc |
289 |
Q |
|
|
||| ||| |||||||| |||||||| ||||||| | ||||||||||||||||||||||||||||| |
|
|
T |
5587 |
gatgaactatacttgagtaattcaaatattgtatttcgatttgatttggattgggttcctccttttc |
5653 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 5365 - 5451
Alignment:
Q |
1 |
ttgagatattttgatatctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgat |
87 |
Q |
|
|
|||||| || ||||| ||||||| ||| ||||||||||||||||| || | | |||||| ||||| || ||||||||||||||||| |
|
|
T |
5365 |
ttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaataggtcaactagcaaatattcaacaccttgat |
5451 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 8459624 - 8459799
Alignment:
Q |
115 |
attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
214 |
Q |
|
|
|||||||| ||| | ||||||||||| |||||||||| ||||||||||||||| ||||| |||||| ||||||||||||| | ||||||||||||| |
|
|
T |
8459624 |
attccttctactcttggaaacctctcatccttatattccttatctattggctcaaataacttctctagtgaaatttcaaacagaaccttttccaaactct |
8459723 |
T |
 |
Q |
215 |
ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca |
290 |
Q |
|
|
|||| ||| || |||||||| ||| || |||| ||||||| ||||| |||||||||||||||||||| ||||| |
|
|
T |
8459724 |
atagtctaggttttctagacttaagtagtttaaatattgtatttcaattcgatttggattgggttcctccatttca |
8459799 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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