View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0044_high_4 (Length: 302)

Name: NF0044_high_4
Description: NF0044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0044_high_4
NF0044_high_4
[»] chr3 (30 HSPs)
chr3 (11-290)||(19333981-19334260)
chr3 (23-290)||(18115949-18116216)
chr3 (17-219)||(19461510-19461712)
chr3 (55-290)||(17727286-17727521)
chr3 (55-290)||(19028515-19028750)
chr3 (115-290)||(19399784-19399959)
chr3 (23-290)||(19414168-19414435)
chr3 (78-290)||(18103385-18103597)
chr3 (17-297)||(17941932-17942212)
chr3 (115-290)||(17949908-17950083)
chr3 (29-290)||(19464346-19464607)
chr3 (118-290)||(18165235-18165407)
chr3 (115-290)||(19375698-19375873)
chr3 (123-290)||(19380977-19381144)
chr3 (115-290)||(18108515-18108690)
chr3 (97-290)||(18016080-18016273)
chr3 (78-290)||(19436997-19437209)
chr3 (115-290)||(19351470-19351644)
chr3 (115-295)||(18146906-18147086)
chr3 (114-290)||(19393224-19393400)
chr3 (115-290)||(14896139-14896314)
chr3 (106-289)||(18144258-18144440)
chr3 (115-290)||(19424763-19424938)
chr3 (118-290)||(25463129-25463301)
chr3 (115-290)||(16677295-16677470)
chr3 (17-119)||(17727601-17727703)
chr3 (17-119)||(19028830-19028932)
chr3 (32-68)||(18144222-18144258)
chr3 (23-87)||(18146814-18146878)
chr3 (142-194)||(24493375-24493427)
[»] chr6 (1 HSPs)
chr6 (83-288)||(13666701-13666906)
[»] scaffold0648 (2 HSPs)
scaffold0648 (123-289)||(3853-4019)
scaffold0648 (1-87)||(4055-4141)
[»] scaffold0274 (2 HSPs)
scaffold0274 (123-289)||(3323-3489)
scaffold0274 (1-87)||(3525-3611)
[»] chr4 (3 HSPs)
chr4 (115-290)||(15535609-15535784)
chr4 (115-290)||(2710325-2710500)
chr4 (23-87)||(2710528-2710592)
[»] scaffold0640 (2 HSPs)
scaffold0640 (123-289)||(5487-5653)
scaffold0640 (1-87)||(5365-5451)
[»] chr8 (1 HSPs)
chr8 (115-290)||(8459624-8459799)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 19333981 - 19334260
Alignment:
11 ttgatatctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaagg 110  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||    
19333981 ttgatctctcttataaccaactacaaggatcagttccagaagaaataggccaactttcccatattcaacaacttgatctctctgaaaaccaactacaagg 19334080  T
111 atctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaa 210  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||||||||    
19334081 atctattccttcaactctaggaaacctctcttccttaaattacttatttattggctctaataatttctctggtgaaatttcaaaattaactttttccaaa 19334180  T
211 ctctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    |||| || ||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
19334181 ctctatactttaggtttgctagacatgagttattcaaatattgtattccaatttgatttggattggattcctccttttca 19334260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 18115949 - 18116216
Alignment:
23 ataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctattccttc 122  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
18115949 ataaccaactacaagaatcaattccagaagaaataggccaacttgcccatattcaacaacttgatctctctgaaaaccaactacaaggatctattccttc 18116048  T
123 aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta 222  Q
    |||| ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18116049 aactctaggaaatctctcttccctaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta 18116148  T
223 gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    |||   ||||||||| || ||||| |||||||| ||||  |||||||||||||||||||||| |||||    
18116149 gatcatctagacttgcgtaattcagattttgtaatccagattgatttggattgggttcctccctttca 18116216  T

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Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 19461510 - 19461712
Alignment:
17 tctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctat 116  Q
    ||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
19461510 tctcttataaccaactacaagaatcagttccaaaagaaataggccaacttgcccatattcaacaacttgatctctctgaaaaccaactacaaggatctat 19461609  T
117 tccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctct 216  Q
    |||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19461610 tccttcaactctaggaaacctctcttccctaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctct 19461709  T
217 agt 219  Q
    |||    
19461710 agt 19461712  T

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Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 55 - 290
Target Start/End: Complemental strand, 17727521 - 17727286
Alignment:
55 ataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctattccttcaactataggaaacctctcttccttatattact 154  Q
    |||||||||||||| ||||||||| |||| ||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||| || |||  || ||    
17727521 ataggccaacttgcacatattcaagacctcgatctctctaaaaaccaactacaaggatcaattccttcaactctaggaaacctctcatctttaattttct 17727422  T
155 tatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgt 254  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  ||| | |||||| ||||||||||||     
17727421 tatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagattcactacaattgagtaattcaaattttgc 17727322  T
255 attccaatttgatttggattgggttcctccttttca 290  Q
    ||||||||||||||||||||||||||||||||||||    
17727321 attccaatttgatttggattgggttcctccttttca 17727286  T

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Target: chr3; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 55 - 290
Target Start/End: Complemental strand, 19028750 - 19028515
Alignment:
55 ataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctattccttcaactataggaaacctctcttccttatattact 154  Q
    |||||||||||||| ||||||||| |||| ||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||| || |||  || ||    
19028750 ataggccaacttgcacatattcaagacctcgatctctctaaaaaccaactacaaggatcaattccttcaactctaggaaacctctcatctttaattttct 19028651  T
155 tatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgt 254  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  ||| | |||||| ||||||||||||     
19028650 tatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagattcactacaattgagtaattcaaattttgc 19028551  T
255 attccaatttgatttggattgggttcctccttttca 290  Q
    ||||||||||||||||||||||||||||||||||||    
19028550 attccaatttgatttggattgggttcctccttttca 19028515  T

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Target: chr3; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 19399784 - 19399959
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
19399784 attccttcaactctaggaaacctctcttccttaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct 19399883  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    ||||||||||||  |||||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||    
19399884 ctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca 19399959  T

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Target: chr3; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 19414168 - 19414435
Alignment:
23 ataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctattccttc 122  Q
    ||||| |||||||||| ||||||||||| | ||||||| || | || |||||||||||||| ||| ||||||||||||||||||||||||  |||| |||    
19414168 ataaccaactacaagggtcagttccagatggaataggcaaattagcacatattcaacacctcgatctctctgaaaaccaactacaaggattcattctttc 19414267  T
123 aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta 222  Q
    |||| ||||||| ||| | |||||| |||||||||||||||| || ||||||||||||||| | |||| ||||||| |||||||||||||||||||||||    
19414268 aactctaggaaatctcccatccttaaattacttatctattggttcgaataatttctctggtaatattttaaatttatatttttccaaactctctagttta 19414367  T
223 gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
     ||   |||||||||||| |||||| |||||| |||||||||||||||||||||||||| ||||||||    
19414368 aatcatctagacttgagtaattcaagttttgttttccaatttgatttggattgggttcccccttttca 19414435  T

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Target: chr3; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 78 - 290
Target Start/End: Original strand, 18103385 - 18103597
Alignment:
78 acaccttgatatctctgaaaaccaactacaaggatctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttc 177  Q
    |||||||||| ||||| | ||||||||||||||||| ||||| |||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||    
18103385 acaccttgatctctcttataaccaactacaaggatcaattccctcaactctaggaaacctctcatccttaaattacttatttattggctctaataatttc 18103484  T
178 tctggtgaaatttcaaatttacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattggg 277  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||   |||||||||||| | |||||||||||||||||||||||| |||||||||    
18103485 tctggtaaaatttcaaatttgcatttttccaaactctgtagtttagatgaactagacttgagtaactcaaattttgtattccaatttgatatggattggg 18103584  T
278 ttcctccttttca 290  Q
    | |||||||||||    
18103585 tacctccttttca 18103597  T

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Target: chr3; HSP #9
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 17941932 - 17942212
Alignment:
17 tctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctat 116  Q
    ||||| ||||| |||||||||||  | ||||| | | ||||||||||||  |  |||||||| |||| ||| ||||||||||| ||||||||||||| ||    
17941932 tctcttataaccaactacaaggactaattccaaatggaataggccaactaccaaatattcaatacctcgatctctctgaaaacgaactacaaggatcaat 17942031  T
117 tccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctct 216  Q
    |||  | ||| ||||||||||||| || ||| |||  |||| |||||| |||||||||||||||||||||||||||||||||  ||||| ||||||||||    
17942032 tcccacgactctaggaaacctctcatcattaaattggttatttattggttctaataatttctctggtgaaatttcaaatttaacttttttcaaactctct 17942131  T
217 agtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttcatctcact 297  Q
    |||||||| |  |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
17942132 agtttagactcactagacttgagtaattcaagttttgtattccaatttgatttggattgggttcctccttttcaactcact 17942212  T

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Target: chr3; HSP #10
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 17949908 - 17950083
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |    
17949908 attccttcaactctaggaaacctctcatccttatattacttatctattggctctaataatttctctggtaaaatttcaaatttacatttttccaaattat 17950007  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
     ||||||||||   |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
17950008 ttagtttagatgaactagacttgagtaattcaaattttgtaatccaatttgatttggattgggttcctccttttca 17950083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 19464346 - 19464607
Alignment:
29 aactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctattccttcaactat 128  Q
    |||||||||||||| || ||||   |||||||||||| || ||||||||| | |||||| |||| |||||||| ||||||||||| ||||| || ||  |    
19464346 aactacaaggatcaatttcagatagaataggccaactagcacatattcaagagcttgatctctcggaaaaccagctacaaggatcaattccgtcgacact 19464445  T
129 aggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagtttagattgg 228  Q
    |||||||||||| || ||| || |||||||||| |||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||| |||      
19464446 aggaaacctctcatctttaaatgacttatctatcggctctaacaatttctcaggtgaaatttcaaatttaactttttccaaactctctagtttacattat 19464545  T
229 ctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
     ||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||||||||    
19464546 ttagacttgagtaattcaaattttgtctcccaaattgatttggattgggttcctccttttca 19464607  T

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Target: chr3; HSP #12
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 118 - 290
Target Start/End: Original strand, 18165235 - 18165407
Alignment:
118 ccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctcta 217  Q
    ||||| ||| ||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
18165235 ccttcgactctaggaaacctctcatccttaaatgacttatctattggctctaataatttctctggtgaaatttcaaatttacattttgccaaactctcca 18165334  T
218 gtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
     ||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
18165335 atttagattcactagacttgagtaattcaaattttgtattccaatttgctttggattgggttcctccttttca 18165407  T

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Target: chr3; HSP #13
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 19375698 - 19375873
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    ||||||| |||| ||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||||||||| || |||  ||||||||||||||    
19375698 attcctttaactctaggaaacctctcatccttaaatttgttatctattggctctaataatttctctggtgaaatttctaaattaactttttccaaactct 19375797  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
19375798 ctagtttagattcactagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttca 19375873  T

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Target: chr3; HSP #14
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 123 - 290
Target Start/End: Original strand, 19380977 - 19381144
Alignment:
123 aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta 222  Q
    |||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||    
19380977 aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaattaactttttccaaactctctagttta 19381076  T
223 gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
19381077 gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttca 19381144  T

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Target: chr3; HSP #15
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 18108515 - 18108690
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    |||||||||||| |||||||||||||||||||| |  |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
18108515 attccttcaactgtaggaaacctctcttccttaaagcacttatttattggctctaataatttctctggcgaaatttcaaatttacatttttccaatctct 18108614  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    ||| ||||  ||  |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
18108615 ctactttattttcactagacttgagtaattcaaattttgtattccagtttgatttggattgggttcctccttttca 18108690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 97 - 290
Target Start/End: Original strand, 18016080 - 18016273
Alignment:
97 aaccaactacaaggatctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatt 196  Q
    |||||||||||||||||||||||||||||| |||||||||| || ||||||  || |||||| ||||||||||||||||||||||||||||||||| | |    
18016080 aaccaactacaaggatctattccttcaactctaggaaacctgtcatccttaatttccttatcgattggctctaataatttctctggtgaaatttcacaat 18016179  T
197 tacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    |   |||||||||||||||||||||| ||    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
18016180 tttttttttccaaactctctagtttaaatcatttagacttgagtaattcaaattttgaattccaatttgatttggattgggttcctccttttca 18016273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 78 - 290
Target Start/End: Original strand, 19436997 - 19437209
Alignment:
78 acaccttgatatctctgaaaaccaactacaaggatctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttc 177  Q
    |||||||||| ||||| | ||||||||||||||||| |||||       |||||||||||||| ||||||  |||| |||||||||| ||||||||||||    
19436997 acaccttgatctctcttataaccaactacaaggatcaattccagatggaataggaaacctctcatccttaagttacctatctattggttctaataatttc 19437096  T
178 tctggtgaaatttcaaatttacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattggg 277  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||| |||||||| |||||||||    
19437097 tctggtgaaatttcaaaattaactttttccaaactctctagtttagattggctcgacttgagcaattcaaattttgtattcaaatttgatatggattggg 19437196  T
278 ttcctccttttca 290  Q
    |||||||||||||    
19437197 ttcctccttttca 19437209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 19351470 - 19351644
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttca-aatttacatttttccaaactc 213  Q
    |||||||||||| ||||||||||||| ||||||  || |||||| |||||||||||| ||||| |||||||||||||| |||||   |||||||||||||    
19351470 attccttcaactctaggaaacctctcatccttaatttccttatcgattggctctaatcatttcactggtgaaatttcacaatttt--tttttccaaactc 19351567  T
214 tctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
19351568 tctagtttagaatggctagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttca 19351644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 115 - 295
Target Start/End: Original strand, 18146906 - 18147086
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    |||||||||||| ||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||| ||||||||| |||  ||||||||| ||||    
18146906 attccttcaactctaggaaacctctcatccttaaattacttatggattggctctaataatttctctggtgcaatttcaaaattaactttttccaacctct 18147005  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttcatctca 295  Q
    ||||||||||||  |||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| ||||    
18147006 ctagtttagattcactagacatgagtaattcaagttttgtattccaatttgatttggattgggttccaccttttcaactca 18147086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 114 - 290
Target Start/End: Original strand, 19393224 - 19393400
Alignment:
114 tattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactc 213  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||||    
19393224 tattccttcaactttaggaaacctctcatccttaaattacttatctattagcgataacaatttctctggtgaaatttcaaatttacatttttccaaactc 19393323  T
214 tctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
      |||||||| ||  ||| |||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||    
19393324 catagtttagtttcactaaacttgagtaattcaatttttgaattccaatttgatttgaattgggttcctccttttca 19393400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 115 - 290
Target Start/End: Complemental strand, 14896314 - 14896139
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    |||||||||||| ||||||||||||| ||||||  || |||||| |||||||||||||||||||||| ||||||||||||||||  ||||||||||| ||    
14896314 attccttcaactctaggaaacctctcatccttaatttccttatccattggctctaataatttctctgctgaaatttcaaatttaactttttccaaacact 14896215  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    ||||||||| ||  |||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
14896214 ctagtttagtttcactagacatgagtaattcaaatgttgcattccaatttgatttggattgggttcctccttttca 14896139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 106 - 289
Target Start/End: Original strand, 18144258 - 18144440
Alignment:
106 caaggatctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacattttt 205  Q
    |||||||||||||||||||||  ||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
18144258 caaggatctattccttcaactccaggaa-cctctcttccttaatttacttatctattggctctaacaatttctctggtgaaatttcaaatttacattttt 18144356  T
206 ccaaactctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttc 289  Q
    |||||||||||||||||| |   ||| |  ||||  |||||  |||||||||||||||||||||||||| ||||||||||||||    
18144357 ccaaactctctagtttagttgtactatagatgaggaattcacgttttgtattccaatttgatttggattaggttcctccttttc 18144440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 19424763 - 19424938
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    |||||||||||| ||||||||||||| || ||| || ||||||  |||||||||||||| ||||| |||||||||||||| |||  ||||||||||||||    
19424763 attccttcaactttaggaaacctctcatcattaaatcacttatggattggctctaataaattctcaggtgaaatttcaaaattaactttttccaaactct 19424862  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    ||||||||||    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
19424863 ctagtttagaagaactagacttgagtaattcaacttttgtattccaatttgatttggattgggttcctccttttca 19424938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 118 - 290
Target Start/End: Original strand, 25463129 - 25463301
Alignment:
118 ccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctcta 217  Q
    |||| |||||||||||||||||| ||||||  || ||||||||| ||||||||||| |||||||| | ||||||||| |||  ||| |||||||||| ||    
25463129 cctttaactataggaaacctctcatccttaacttccttatctatcggctctaataacttctctggggcaatttcaaaattaactttctccaaactcttta 25463228  T
218 gtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    |||||||||  |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||    
25463229 gtttagattcactagacttgagtaattcaacttttgtattacaatttgatttggattgggttcctccttttca 25463301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 16677295 - 16677470
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    |||||||||||| ||||||||||||| || ||| ||| |||||||||||||  |||| |||||||||||||| |||||||||||  ||||||||||||||    
16677295 attccttcaactctaggaaacctctcatctttaaattccttatctattggcaataatgatttctctggtgaagtttcaaatttaactttttccaaactct 16677394  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    |||||||||||   |||||| ||||    | || | |||||||||||||||||||||||||||||||||| |||||    
16677395 ctagtttagatatactagacctgagaagattaagtgttgtattccaatttgatttggattgggttcctccatttca 16677470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 17727703 - 17727601
Alignment:
17 tctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctat 116  Q
    ||||||| ||| |||||||||| ||||||||| | || ||||||  ||| |  |||||||||||||| ||| |||||||||||||||||| |||||| ||    
17727703 tctctgaaaaccaactacaagggtcagttccatatgatataggcagactagtacatattcaacacctcgatctctctgaaaaccaactacgaggatcaat 17727604  T
117 tcc 119  Q
    |||    
17727603 tcc 17727601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 19028932 - 19028830
Alignment:
17 tctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgatatctctgaaaaccaactacaaggatctat 116  Q
    ||||||| ||| |||||||||| ||||||||| | || ||||||  ||| |  |||||||||||||| ||| |||||||||||||||||| |||||| ||    
19028932 tctctgaaaaccaactacaagggtcagttccatatgatataggcagactagtacatattcaacacctcgatctctctgaaaaccaactacgaggatcaat 19028833  T
117 tcc 119  Q
    |||    
19028832 tcc 19028830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 18144222 - 18144258
Alignment:
32 tacaaggatcagttccagaagaaataggccaacttgc 68  Q
    |||||||||||||||||||||||||||||||||||||    
18144222 tacaaggatcagttccagaagaaataggccaacttgc 18144258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 18146814 - 18146878
Alignment:
23 ataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgat 87  Q
    ||||||||||||| |||||| ||||| | | ||||||||||||||| ||||||||| ||||||||    
18146814 ataacaaactacacggatcaattccaaatggaataggccaacttgcacatattcaataccttgat 18146878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 24493375 - 24493427
Alignment:
142 tccttatattacttatctattggctctaataatttctctggtgaaatttcaaa 194  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||| |||||    
24493375 tccttatcttacttatctattgcctctaataatttctcaggtgaaatatcaaa 24493427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 83 - 288
Target Start/End: Complemental strand, 13666906 - 13666701
Alignment:
83 ttgatatctctgaaaaccaactacaaggatctattccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctgg 182  Q
    ||||| ||| ||||||| | ||||||||||| |||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
13666906 ttgatctctttgaaaacaacctacaaggatcaattccttcaactctaggaaacctctcatccttaaattacttatctattagctctaataatttctctgg 13666807  T
183 tgaaatttcaaatttacatttttccaaactctctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcct 282  Q
    ||||||||||||||||  |||||| |||||||||||||||||    |||  ||||||| |||||||  ||||||||||||||||||||||||||||||||    
13666806 tgaaatttcaaatttaactttttctaaactctctagtttagacacactatgcttgagtaattcaaagcttgtattccaatttgatttggattgggttcct 13666707  T
283 cctttt 288  Q
    ||||||    
13666706 cctttt 13666701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 123 - 289
Target Start/End: Complemental strand, 4019 - 3853
Alignment:
123 aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta 222  Q
    |||| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
4019 aactctaggaaacctctcatccttacattccttatctattggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagttta 3920  T
223 gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttc 289  Q
    |||   ||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||    
3919 gatgaactatacttgagtaattcaaatattgtattccgatttgatttggattgggttcctccttttc 3853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4141 - 4055
Alignment:
1 ttgagatattttgatatctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgat 87  Q
    |||||| || ||||| ||||||| ||| ||||||||||||||||| || | | |||||| ||||| ||  |||||||||||||||||    
4141 ttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaataggtcaactagcaaatattcaacaccttgat 4055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 123 - 289
Target Start/End: Complemental strand, 3489 - 3323
Alignment:
123 aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta 222  Q
    |||| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
3489 aactctaggaaacctctcatccttacattccttatctattggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagttta 3390  T
223 gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttc 289  Q
    |||   ||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||    
3389 gatgaactatacttgagtaattcaaatattgtattccgatttgatttggattgggttcctccttttc 3323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3611 - 3525
Alignment:
1 ttgagatattttgatatctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgat 87  Q
    |||||| || ||||| ||||||| ||| ||||||||||||||||| || | | |||||| ||||| ||  |||||||||||||||||    
3611 ttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaataggtcaactagcaaatattcaacaccttgat 3525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 15535609 - 15535784
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    |||||||||||| ||||||||||||| |||||| ||| |||||||||||| ||||||||||| ||||||| || |||||| |||  ||||||||||||||    
15535609 attccttcaactctaggaaacctctcatccttaaattccttatctattggatctaataatttatctggtgcaaattcaaaattaactttttccaaactct 15535708  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    || |||||||||  |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
15535709 ctggtttagattcactagacttgagtaattcaaattttgtattccaattttatttggattgggttcctccttttca 15535784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 115 - 290
Target Start/End: Complemental strand, 2710500 - 2710325
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    |||||||||||| ||||||||||||| |||||| | | ||||  ||||||| ||||| |||| |||||||||||||||||||||  ||||||||||||||    
2710500 attccttcaactctaggaaacctctcatccttaaagtccttacttattggcactaatcatttttctggtgaaatttcaaatttaactttttccaaactct 2710401  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
    ||||||||||||  |||||| |||||  ||||| || ||||||||||||||||||| |||||||||||||||||||    
2710400 ctagtttagattcactagacgtgagtagttcaacttgtgtattccaatttgatttgaattgggttcctccttttca 2710325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 2710592 - 2710528
Alignment:
23 ataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgat 87  Q
    ||||| ||||||||||| || ||| ||| |||||||||||||| ||  |||||||| ||||||||    
2710592 ataaccaactacaaggaccaattcaagatgaaataggccaactagcatatattcaataccttgat 2710528  T

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Target: scaffold0640 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 123 - 289
Target Start/End: Original strand, 5487 - 5653
Alignment:
123 aactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagttta 222  Q
    |||| ||||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
5487 aactctaggaaacctctcatccttacattccttatctactggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagttta 5586  T
223 gattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttc 289  Q
    |||   ||| |||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||    
5587 gatgaactatacttgagtaattcaaatattgtatttcgatttgatttggattgggttcctccttttc 5653  T

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Target: scaffold0640; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 5365 - 5451
Alignment:
1 ttgagatattttgatatctctgataacaaactacaaggatcagttccagaagaaataggccaacttgcccatattcaacaccttgat 87  Q
    |||||| || ||||| ||||||| ||| ||||||||||||||||| || | | |||||| ||||| ||  |||||||||||||||||    
5365 ttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaataggtcaactagcaaatattcaacaccttgat 5451  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 8459624 - 8459799
Alignment:
115 attccttcaactataggaaacctctcttccttatattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct 214  Q
    |||||||| ||| | ||||||||||| |||||||||| ||||||||||||||| ||||| |||||| |||||||||||||   |   |||||||||||||    
8459624 attccttctactcttggaaacctctcatccttatattccttatctattggctcaaataacttctctagtgaaatttcaaacagaaccttttccaaactct 8459723  T
215 ctagtttagattggctagacttgagttattcaaattttgtattccaatttgatttggattgggttcctccttttca 290  Q
     |||| ||| ||  |||||||| |||  || |||| ||||||| ||||| |||||||||||||||||||| |||||    
8459724 atagtctaggttttctagacttaagtagtttaaatattgtatttcaattcgatttggattgggttcctccatttca 8459799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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