View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0044_low_1 (Length: 666)
Name: NF0044_low_1
Description: NF0044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0044_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 104 - 666
Target Start/End: Original strand, 19754963 - 19755525
Alignment:
| Q |
104 |
gaagactctgtgtcagtatttgaagggaggatattaccaaccaacataagatcaagggcctcaaaagggtcacgttctttcagcacatcaaactcctctt |
203 |
Q |
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| T |
19754963 |
gaagactctgtgtcagtatttgaagggaggatattaccaaccaacataagatcaagggcctcaaaagggtcacgttctttcagcacatcaaactcctctt |
19755062 |
T |
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| Q |
204 |
gacttatagtcacagtggtagaatttgtcactggagtaggagattttgtctttggagaatcttgtttagattcatctttagattctttgacatattcttt |
303 |
Q |
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| T |
19755063 |
gacttattgtcacactggtagaatttgtcactcgagtaggagattttgtctttggagaatcttgtttagattcatctttagattctttgacatattcttt |
19755162 |
T |
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| Q |
304 |
acgaccttccccatcagtgtcagtgtgctttgtatcatcttcagagttcaacccacgaggttctttactttttccaccttcgaccggagatggaccccct |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
19755163 |
acgaccttccccatcagtgtcagtgtgctttgtatcatcttcagagttcaacccacgaggttctttactttttccactttcgaccagagatggaccccct |
19755262 |
T |
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| Q |
404 |
tcattttcttcataaatgtgttgttgatcatcttcaacacttttagcattcaaatcttgaggaggttcagaaagcattttctctcggtcttcatcatctt |
503 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19755263 |
tcattttcttcatcaatgtgttgttgatcatcttcaacacttttatcattcaaatcttgaggaggttcagaaagcattttctctgggtcttcatcatctt |
19755362 |
T |
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| Q |
504 |
tgggaggactagagtcaactatcatattgtcctcaaagatggggtcaattgactggttaaaagtggaaggaggtgtttgttgcttgcccgtttcggcatt |
603 |
Q |
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| T |
19755363 |
tgggaggactagagtcaattatcatattgtcctcaaagatggggttaattgactggttaaaagtggaaggaggtgtttgttgcttgcccgtttcggcatt |
19755462 |
T |
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| Q |
604 |
gctaactttagcacccttaaacacataaaaaagtcgaagtaaataaagaaggcttgttaaaga |
666 |
Q |
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|||||||| |||||||| |||||||| ||||||||||||| ||||||||||| |||||||||| |
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| T |
19755463 |
gctaacttcagcaccctgaaacacattaaaaagtcgaagttaataaagaaggtttgttaaaga |
19755525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 477
Target Start/End: Complemental strand, 8135228 - 8135128
Alignment:
| Q |
377 |
ccaccttcgaccggagatggacccccttcattttcttcataaatgtgttgttgatcatcttcaacacttttagcattcaaatcttgaggaggttcagaaa |
476 |
Q |
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|||| |||||| |||||||||||||||| | ||| |||| | |||| || ||||||||||||| |||| | ||||| ||||||||| | | ||||||| |
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| T |
8135228 |
ccactttcgactagagatggacccccttcgtcttcctcatcagtgtgatgctgatcatcttcaatacttctggcatttgaatcttgagaatgatcagaaa |
8135129 |
T |
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| Q |
477 |
g |
477 |
Q |
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| T |
8135128 |
g |
8135128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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