View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0044_low_5 (Length: 361)
Name: NF0044_low_5
Description: NF0044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0044_low_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 30 - 361
Target Start/End: Original strand, 42677820 - 42678161
Alignment:
| Q |
30 |
tgataatgattttcagaaagtatattt----------cccttctttactctggaagtgtttttatgttgctagaatggatatacttgttaaataaattct |
119 |
Q |
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| T |
42677820 |
tgataatgattttcagaaagtatattttattactcctcccttctttactctggaagtgtttttatgttgctagaatggatatacttgttaaataaattct |
42677919 |
T |
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| Q |
120 |
gaatttcttgtgatagtgtcgctttgcttctgggtatttttacttcttaaatttatgactatttctttctttaaatttggtaatgattttctgaaagcat |
219 |
Q |
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| T |
42677920 |
gaatttcttgtgatagtgtctctttacttctgggtatttttacttcttaaatttatgactatttctttctttaaatttggtaatgattttctgaaagcat |
42678019 |
T |
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| Q |
220 |
attttatttatcctcccttctttactgtttctggtgttgatgttagagttagagaatgaatagttgttagttaattaagttatgcttgtgcgttttaaat |
319 |
Q |
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| T |
42678020 |
attttatttatcctcccttctttactgtttctggtgttgatgttagagttagagaatgaatagttgttagttaattaagttatgcttgtgcgttgtaaat |
42678119 |
T |
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| Q |
320 |
tcaccacattaacccactcttttacacatgctgctactagtt |
361 |
Q |
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| T |
42678120 |
tcaccacattaaccccctcttttacacatgctgctgctagtt |
42678161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 246
Target Start/End: Original strand, 42677241 - 42677362
Alignment:
| Q |
113 |
aaattctgaatttcttgtgatagtgtcgctttgcttctgggtatttttacttcttaaatttatgactatttctttctttaaatttggtaatgattttctg |
212 |
Q |
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||||||||| |||| ||| ||||| || |||||||||| |||||||||||||||||||||||| | |||| ||||||| ||||||||||| |
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| T |
42677241 |
aaattctgagtttcatgtcatagtatctctttgcttctaggtatttttacttcttaaatttatca-gattt-tttcttt----------atgattttctg |
42677328 |
T |
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| Q |
213 |
aaagcatattttatttatcctcccttctttactg |
246 |
Q |
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|||| |||||||||||||| |||||||||||||| |
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| T |
42677329 |
aaagtatattttatttatcttcccttctttactg |
42677362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 42677736 - 42677868
Alignment:
| Q |
113 |
aaattctgaatttcttgtgatagtgtcgctttgcttctgggtatttttacttcttaaatttatgactattt-ctttctttaaatttggtaatgattttct |
211 |
Q |
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||||| ||| |||| ||||||| | || |||| |||| ||||||||||||| ||||||| | |||| ||| ||||||||| |||| ||||||||||| |
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| T |
42677736 |
aaattttgagtttcatgtgatattatctttttgtttctaggtatttttacttattaaattca-gacttttttctttctttacgtttgataatgattttca |
42677834 |
T |
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| Q |
212 |
gaaagcatattttatttatcctcccttctttact |
245 |
Q |
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||||| |||||||||| |||||||||||||||| |
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| T |
42677835 |
gaaagtatattttattactcctcccttctttact |
42677868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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